mRNA_Ecto-sp13_S_contig7448.18632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: D7FT65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT65_ECTSI) HSP 1 Score: 407 bits (1047), Expect = 2.580e-141 Identity = 228/270 (84.44%), Postives = 236/270 (87.41%), Query Frame = 1
Query: 1 MHLEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAEHCKE---GSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSENKGITVMEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 801
M L+ALKGV EP FFPA+G PASTGESLAQSGQIK KA M G VVGS GATGASSEGGV GQ AAE+CKE GSEA+GLSEE+PEVE G G D EA+LSRAVTERDVEGDGDSTVGLK EKGADS SVA RQAGKLLKTEQGKS RS+NKGITVMEAAL IVIQQL V TRDLQC+SLTLNEACRRAPTLVVMVGG YMPLERLAGSKKNHEAGVPPA AGD MT PGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR
Sbjct: 1 MPLKALKGVLEPVFFPASGAPASTGESLAQSGQIKTGVKANGMHGRVVGSVGATGASSEGGVCGQAAAENCKERKEGSEAKGLSEENPEVEVGDGFDAGAEAELSRAVTERDVEGDGDSTVGLKGEKGADSDSVAPRQAGKLLKTEQGKSFRSDNKGITVMEAALMIVIQQLYVWTRDLQCSSLTLNEACRRAPTLVVMVGGGYMPLERLAGSKKNHEAGVPPAMAGDMMTRPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 270
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5KTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ8_9PHAE) HSP 1 Score: 307 bits (787), Expect = 4.810e-102 Identity = 186/269 (69.14%), Postives = 204/269 (75.84%), Query Frame = 1
Query: 1 MHLEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAEHCKE---GSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSENK----GITVMEAALT--------------IVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLV 744
M LEALK RE FFPAAG PAST ESLAQSGQIK DA AT M G VVG G ATGASSE GV GQ AEHCKE GSEA+GLSEED G G D P +LSRAVTE+DVEGDGDSTVGLK EKGAD SVA RQAGKLLKTEQGKSSRS+ + G++ +E +VIQQL VST+DLQC+SLTL+EACRRAPTLVV+VG Y+PLERLAG KKNHEAGVPPATAG+ MTGPGL+PESKR+P+ILPRGLV
Sbjct: 1 MPLEALKAARELVFFPAAGAPASTVESLAQSGQIKTDATATGMHGRVVGLGRATGASSEDGVCGQAVAEHCKERKEGSEAKGLSEEDV----GDGFDAGPGEELSRAVTEQDVEGDGDSTVGLKREKGADPDSVAPRQAGKLLKTEQGKSSRSQTRESQSGVSYLETIQVQFLQRKVIQPVFELVVIQQLHVSTKDLQCSSLTLSEACRRAPTLVVVVGRGYLPLERLAGCKKNHEAGVPPATAGNMMTGPGLIPESKRLPRILPRGLV 265
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5L6Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q1_9PHAE) HSP 1 Score: 207 bits (527), Expect = 7.470e-61 Identity = 107/123 (86.99%), Postives = 111/123 (90.24%), Query Frame = 1
Query: 472 MEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVRYLRLTEAASLPDN 840
MEAALTIV ST DLQC+ LTLNEACRRAPTLVVMV GDYMPL+RLAGSKKNHEAGVPPATAGD MTGPGLMPESKRVPQILP GLVWCLPLEAFGQGDVDLPVVR LRLTEAA+LPD+
Sbjct: 1 MEAALTIVR-----STMDLQCSPLTLNEACRRAPTLVVMVVGDYMPLKRLAGSKKNHEAGVPPATAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVDLPVVRNLRLTEAANLPDD 118
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5JV70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV70_9PHAE) HSP 1 Score: 192 bits (489), Expect = 7.630e-55 Identity = 145/303 (47.85%), Postives = 172/303 (56.77%), Query Frame = 1
Query: 19 KGVREPRFFPAAGTPASTGESLAQSGQI------------KPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAEHC---KEGSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSE-----------------------NKGITVMEAALTIVIQQLCVSTRD--LQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVRYL 807
KGVREP FPAAG PASTGESL Q+GQI K D AT + G VVGS GA GAS+EGG+ GQVAAEH K+G EA+GLSEE+ EV G G PEA+LSR+V E +VE DG+STVGL ++ DS A RQAG G S+R E K T +L+ + VS R LQC SL LN+ACRR T +V VG MPL+RLA +E V PATAG+TMT PG+MP + RV +I P L CL L+ GQ +VD VRYL
Sbjct: 59 KGVREPSVFPAAGAPASTGESLNQTGQITSDDMVTQPGQTKADDNATGVDGRVVGSEGAPGASAEGGMCGQVAAEHSEEMKDGGEAEGLSEENAEVAVGGGSSTGPEAELSRSVAELEVEDDGESTVGLNKKRVTDS--TARRQAGTRSSRSDGASTRQEAWHNLRFKQYRLNQSQYRNMRMFTKVHTCWRPSLSSSVS---VSYRPNYLQCLSLELNKACRRVSTFIVTVGESCMPLDRLA----RNEVRVRPATAGNTMTAPGVMPTA-RVSRIRPCSLWRCLALDVLGQSEVDFACVRYL 351
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5KHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT3_9PHAE) HSP 1 Score: 174 bits (441), Expect = 7.960e-51 Identity = 106/154 (68.83%), Postives = 119/154 (77.27%), Query Frame = 1
Query: 7 LEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAE---HCKEGSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSENK 459
L+ALKGV+EP FFPAAG PA T E LAQSGQIKPDAKAT M G VVGSGGATGASS+GGV GQ AAE KEG E +GL EEDPEVE G G P A SRAV ER+VE DG+STVGL+ +KGA S S+ R+AGKLLKTE+GKS RS++K
Sbjct: 19 LKALKGVQEPGFFPAAGAPAWTDEGLAQSGQIKPDAKATGMTGMVVGSGGATGASSKGGVCGQAAAEPKEERKEGGEVKGLLEEDPEVEVGDGYGAGPAAGFSRAVAEREVECDGNSTVGLQGDKGAGSDSMVPREAGKLLKTERGKSCRSDSK 172
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5K6K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K5_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.520e-12 Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 472 MEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPL-----ERLAGSKKNHEAGVPPATAGDTMTGPGLMPESK 711
M A L IV+ Q VST LQ +S LN+ACRR TLVV VG +MP+ +RLA S+K++E GV ATA TM GPG+MP S+
Sbjct: 1 MMAVLIIVVYQRFVSTWHLQRSSTELNKACRREATLVVTVGEGFMPVGFMPVDRLARSRKHNEVGVRRATAEKTMAGPGVMPASR 85 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7448.18632.1 >prot_Ecto-sp13_S_contig7448.18632.1 ID=prot_Ecto-sp13_S_contig7448.18632.1|Name=mRNA_Ecto-sp13_S_contig7448.18632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp MHLEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSback to top mRNA from alignment at Ecto-sp13_S_contig7448:3394..4832+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7448.18632.1 ID=mRNA_Ecto-sp13_S_contig7448.18632.1|Name=mRNA_Ecto-sp13_S_contig7448.18632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7448:3394..4832+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7448:3394..4832+ >mRNA_Ecto-sp13_S_contig7448.18632.1 ID=mRNA_Ecto-sp13_S_contig7448.18632.1|Name=mRNA_Ecto-sp13_S_contig7448.18632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7448:3394..4832+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |