mRNA_Ecto-sp13_S_contig7448.18632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7448.18632.1
Unique NamemRNA_Ecto-sp13_S_contig7448.18632.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: D7FT65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT65_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 2.580e-141
Identity = 228/270 (84.44%), Postives = 236/270 (87.41%), Query Frame = 1
Query:    1 MHLEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAEHCKE---GSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSENKGITVMEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 801
            M L+ALKGV EP FFPA+G PASTGESLAQSGQIK   KA  M G VVGS GATGASSEGGV GQ AAE+CKE   GSEA+GLSEE+PEVE G G D   EA+LSRAVTERDVEGDGDSTVGLK EKGADS SVA RQAGKLLKTEQGKS RS+NKGITVMEAAL IVIQQL V TRDLQC+SLTLNEACRRAPTLVVMVGG YMPLERLAGSKKNHEAGVPPA AGD MT PGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR
Sbjct:    1 MPLKALKGVLEPVFFPASGAPASTGESLAQSGQIKTGVKANGMHGRVVGSVGATGASSEGGVCGQAAAENCKERKEGSEAKGLSEENPEVEVGDGFDAGAEAELSRAVTERDVEGDGDSTVGLKGEKGADSDSVAPRQAGKLLKTEQGKSFRSDNKGITVMEAALMIVIQQLYVWTRDLQCSSLTLNEACRRAPTLVVMVGGGYMPLERLAGSKKNHEAGVPPAMAGDMMTRPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 270          
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5KTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ8_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 4.810e-102
Identity = 186/269 (69.14%), Postives = 204/269 (75.84%), Query Frame = 1
Query:    1 MHLEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAEHCKE---GSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSENK----GITVMEAALT--------------IVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLV 744
            M LEALK  RE  FFPAAG PAST ESLAQSGQIK DA AT M G VVG G ATGASSE GV GQ  AEHCKE   GSEA+GLSEED     G G D  P  +LSRAVTE+DVEGDGDSTVGLK EKGAD  SVA RQAGKLLKTEQGKSSRS+ +    G++ +E                  +VIQQL VST+DLQC+SLTL+EACRRAPTLVV+VG  Y+PLERLAG KKNHEAGVPPATAG+ MTGPGL+PESKR+P+ILPRGLV
Sbjct:    1 MPLEALKAARELVFFPAAGAPASTVESLAQSGQIKTDATATGMHGRVVGLGRATGASSEDGVCGQAVAEHCKERKEGSEAKGLSEEDV----GDGFDAGPGEELSRAVTEQDVEGDGDSTVGLKREKGADPDSVAPRQAGKLLKTEQGKSSRSQTRESQSGVSYLETIQVQFLQRKVIQPVFELVVIQQLHVSTKDLQCSSLTLSEACRRAPTLVVVVGRGYLPLERLAGCKKNHEAGVPPATAGNMMTGPGLIPESKRLPRILPRGLV 265          
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5L6Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q1_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 7.470e-61
Identity = 107/123 (86.99%), Postives = 111/123 (90.24%), Query Frame = 1
Query:  472 MEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVRYLRLTEAASLPDN 840
            MEAALTIV      ST DLQC+ LTLNEACRRAPTLVVMV GDYMPL+RLAGSKKNHEAGVPPATAGD MTGPGLMPESKRVPQILP GLVWCLPLEAFGQGDVDLPVVR LRLTEAA+LPD+
Sbjct:    1 MEAALTIVR-----STMDLQCSPLTLNEACRRAPTLVVMVVGDYMPLKRLAGSKKNHEAGVPPATAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVDLPVVRNLRLTEAANLPDD 118          
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5JV70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV70_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 7.630e-55
Identity = 145/303 (47.85%), Postives = 172/303 (56.77%), Query Frame = 1
Query:   19 KGVREPRFFPAAGTPASTGESLAQSGQI------------KPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAEHC---KEGSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSE-----------------------NKGITVMEAALTIVIQQLCVSTRD--LQCASLTLNEACRRAPTLVVMVGGDYMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVRYL 807
            KGVREP  FPAAG PASTGESL Q+GQI            K D  AT + G VVGS GA GAS+EGG+ GQVAAEH    K+G EA+GLSEE+ EV  G G    PEA+LSR+V E +VE DG+STVGL  ++  DS   A RQAG       G S+R E                        K  T    +L+  +    VS R   LQC SL LN+ACRR  T +V VG   MPL+RLA     +E  V PATAG+TMT PG+MP + RV +I P  L  CL L+  GQ +VD   VRYL
Sbjct:   59 KGVREPSVFPAAGAPASTGESLNQTGQITSDDMVTQPGQTKADDNATGVDGRVVGSEGAPGASAEGGMCGQVAAEHSEEMKDGGEAEGLSEENAEVAVGGGSSTGPEAELSRSVAELEVEDDGESTVGLNKKRVTDS--TARRQAGTRSSRSDGASTRQEAWHNLRFKQYRLNQSQYRNMRMFTKVHTCWRPSLSSSVS---VSYRPNYLQCLSLELNKACRRVSTFIVTVGESCMPLDRLA----RNEVRVRPATAGNTMTAPGVMPTA-RVSRIRPCSLWRCLALDVLGQSEVDFACVRYL 351          
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5KHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT3_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 7.960e-51
Identity = 106/154 (68.83%), Postives = 119/154 (77.27%), Query Frame = 1
Query:    7 LEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGSGGATGASSEGGVSGQVAAE---HCKEGSEAQGLSEEDPEVEGGRGVDLEPEAKLSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRSENK 459
            L+ALKGV+EP FFPAAG PA T E LAQSGQIKPDAKAT M G VVGSGGATGASS+GGV GQ AAE     KEG E +GL EEDPEVE G G    P A  SRAV ER+VE DG+STVGL+ +KGA S S+  R+AGKLLKTE+GKS RS++K
Sbjct:   19 LKALKGVQEPGFFPAAGAPAWTDEGLAQSGQIKPDAKATGMTGMVVGSGGATGASSKGGVCGQAAAEPKEERKEGGEVKGLLEEDPEVEVGDGYGAGPAAGFSRAVAEREVECDGNSTVGLQGDKGAGSDSMVPREAGKLLKTERGKSCRSDSK 172          
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Match: A0A6H5K6K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.520e-12
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  472 MEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGDYMPL-----ERLAGSKKNHEAGVPPATAGDTMTGPGLMPESK 711
            M A L IV+ Q  VST  LQ +S  LN+ACRR  TLVV VG  +MP+     +RLA S+K++E GV  ATA  TM GPG+MP S+
Sbjct:    1 MMAVLIIVVYQRFVSTWHLQRSSTELNKACRREATLVVTVGEGFMPVGFMPVDRLARSRKHNEVGVRRATAEKTMAGPGVMPASR 85          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7448.18632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FT65_ECTSI2.580e-14184.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTZ8_9PHAE4.810e-10269.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Q1_9PHAE7.470e-6186.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV70_9PHAE7.630e-5547.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHT3_9PHAE7.960e-5168.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K5_9PHAE1.520e-1252.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7448contigEcto-sp13_S_contig7448:3394..4832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size841
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003420.1
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.1462746-CDS-Ecto-sp13_S_contig7448:3393..38601681464014.1462746-CDS-Ecto-sp13_S_contig7448:3393..3860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7448 3394..3860 +
1681464014.1586425-CDS-Ecto-sp13_S_contig7448:4459..48321681464014.1586425-CDS-Ecto-sp13_S_contig7448:4459..4832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7448 4460..4832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7448.18632.1prot_Ecto-sp13_S_contig7448.18632.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7448 3394..4832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7448.18632.1

>prot_Ecto-sp13_S_contig7448.18632.1 ID=prot_Ecto-sp13_S_contig7448.18632.1|Name=mRNA_Ecto-sp13_S_contig7448.18632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
MHLEALKGVREPRFFPAAGTPASTGESLAQSGQIKPDAKATRMRGSVVGS
GGATGASSEGGVSGQVAAEHCKEGSEAQGLSEEDPEVEGGRGVDLEPEAK
LSRAVTERDVEGDGDSTVGLKWEKGADSASVALRQAGKLLKTEQGKSSRS
ENKGITVMEAALTIVIQQLCVSTRDLQCASLTLNEACRRAPTLVVMVGGD
YMPLERLAGSKKNHEAGVPPATAGDTMTGPGLMPESKRVPQILPRGLVWC
LPLEAFGQGDVDLPVVRYLRLTEAASLPDN
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mRNA from alignment at Ecto-sp13_S_contig7448:3394..4832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7448.18632.1 ID=mRNA_Ecto-sp13_S_contig7448.18632.1|Name=mRNA_Ecto-sp13_S_contig7448.18632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7448:3394..4832+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCTAGAGGCCCTAAAAGGGGTCCGGGAGCCCAGGTTTTTTCCTGC TGCTGGAACTCCAGCTTCGACTGGCGAGAGTCTCGCCCAGTCGGGCCAGA TCAAGCCTGACGCTAAGGCCACTAGGATGCGCGGGAGCGTGGTGGGTTCG GGGGGGGCTACGGGGGCATCTTCGGAGGGCGGGGTGTCCGGGCAGGTGGC GGCAGAGCATTGTAAGGAGGGTAGCGAGGCTCAGGGTCTATCGGAGGAGG ACCCCGAGGTGGAGGGGGGGAGGGGGGTCGACTTAGAACCAGAGGCAAAG TTGTCGAGGGCGGTGACGGAGCGAGACGTCGAAGGTGACGGCGATAGTAC CGTGGGGCTGAAGTGGGAGAAGGGCGCTGACTCTGCCTCGGTGGCGCTTC GTCAAGCCGGAAAGTTGCTCAAGACGGAACAAGGCAAATCCTCTCGCTCG GAGAACAAGGGAATCACGTAAGGACACGCTGAGAGAAAAATAGTATCGGC TGAAGCAAGCTTGTTGTCGAGACTAGCGGATGTCGACAAAGGTTCTTGTC TACATGTTGTTATTTTGCCCCCGAAGCCAAGCTCGAAACGTCAGAATCGG GGGGCAGCTACCTAGAGACGATATAGGTGCCCTCCTCTCCTCCTCTGCCG TAGACCTGATGGTAGGGAACGTCTCCGTGTTTGAAACCTGTACGGTTTTT ATCAATTCTGCAGAGCGTTGGTAGAGAAAACGGGCGCGTTCATCCGCCAC CCCCGTTACATCGCCCACGTCCTCCCCTCCGACATATGTCTCTCGGCCTA CTTGCACTTTGTATCAATTCAACGAAAAAATCTGCCGCGCAGAGGGAGCG AAAGGACATGCAGCTTAATCGACTCACCTACTCCTTACCGCGCGCGCTCG CCAACCAAACTCACGGCCCGAAGACAGAGCCTTGGGGCCAACCGCCGTCT AACTTTGGAGCCAAATACGAGGTCCACGAAGAATGATCCGTTTGTCCTTT TGACTCTGTCTCAATGCCTCCCTTGCGCTTGCCACCTTGCCGATGCGTCT CTTGCACTGTCAACAGCGTCATGGAGGCGGCCCTCACGATCGTGATTCAA CAGCTTTGTGTGTCGACCAGGGACCTCCAGTGCGCGTCATTGACGCTCAA CGAAGCGTGCCGGCGCGCACCGACTTTGGTGGTGATGGTTGGTGGAGACT ACATGCCACTCGAACGCCTGGCCGGCAGCAAGAAGAACCACGAGGCCGGA GTGCCCCCGGCTACGGCCGGCGACACGATGACCGGGCCAGGCCTCATGCC GGAGTCAAAACGGGTACCTCAAATCCTTCCGCGCGGTCTGGTGTGGTGCC TGCCCCTGGAGGCGTTCGGACAGGGTGACGTCGACCTCCCAGTTGTGCGT TACCTGCGACTCACCGAGGCAGCCTCCCTGCCGGATAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7448:3394..4832+

>mRNA_Ecto-sp13_S_contig7448.18632.1 ID=mRNA_Ecto-sp13_S_contig7448.18632.1|Name=mRNA_Ecto-sp13_S_contig7448.18632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7448:3394..4832+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCTAGAGGCCCTAAAAGGGGTCCGGGAGCCCAGGTTTTTTCCTGC
TGCTGGAACTCCAGCTTCGACTGGCGAGAGTCTCGCCCAGTCGGGCCAGA
TCAAGCCTGACGCTAAGGCCACTAGGATGCGCGGGAGCGTGGTGGGTTCG
GGGGGGGCTACGGGGGCATCTTCGGAGGGCGGGGTGTCCGGGCAGGTGGC
GGCAGAGCATTGTAAGGAGGGTAGCGAGGCTCAGGGTCTATCGGAGGAGG
ACCCCGAGGTGGAGGGGGGGAGGGGGGTCGACTTAGAACCAGAGGCAAAG
TTGTCGAGGGCGGTGACGGAGCGAGACGTCGAAGGTGACGGCGATAGTAC
CGTGGGGCTGAAGTGGGAGAAGGGCGCTGACTCTGCCTCGGTGGCGCTTC
GTCAAGCCGGAAAGTTGCTCAAGACGGAACAAGGCAAATCCTCTCGCTCG
GAGAACAAGGGAATCACCGTCATGGAGGCGGCCCTCACGATCGTGATTCA
ACAGCTTTGTGTGTCGACCAGGGACCTCCAGTGCGCGTCATTGACGCTCA
ACGAAGCGTGCCGGCGCGCACCGACTTTGGTGGTGATGGTTGGTGGAGAC
TACATGCCACTCGAACGCCTGGCCGGCAGCAAGAAGAACCACGAGGCCGG
AGTGCCCCCGGCTACGGCCGGCGACACGATGACCGGGCCAGGCCTCATGC
CGGAGTCAAAACGGGTACCTCAAATCCTTCCGCGCGGTCTGGTGTGGTGC
CTGCCCCTGGAGGCGTTCGGACAGGGTGACGTCGACCTCCCAGTTGTGCG
TTACCTGCGACTCACCGAGGCAGCCTCCCTGCCGGATAAC
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