mRNA_Ecto-sp13_S_contig7445.18626.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7445.18626.1
Unique NamemRNA_Ecto-sp13_S_contig7445.18626.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7445.18626.1 vs. uniprot
Match: D7G986_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G986_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.200e-8
Identity = 40/83 (48.19%), Postives = 42/83 (50.60%), Query Frame = 2 
Query:    2 VISGRSSTTSRDSPAAIRWPSSLSVNLCVLPQQRLPQ*LLSTQQQQRRTKNMLRLARFLAETLASRLQVRRRCLTISRDRPQI 250
            V SGRSSTTSRDSPAAIRWPS LS                                     TLASRL VRRRCL+ SRDRPQ+
Sbjct:   40 VSSGRSSTTSRDSPAAIRWPSYLS-------------------------------------TLASRLPVRRRCLSNSRDRPQL 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7445.18626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G986_ECTSI5.200e-848.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7445contigEcto-sp13_S_contig7445:133..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.682844-CDS-Ecto-sp13_S_contig7445:132..2121681464013.682844-CDS-Ecto-sp13_S_contig7445:132..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7445 133..212 +
1681464013.696836-CDS-Ecto-sp13_S_contig7445:286..4221681464013.696836-CDS-Ecto-sp13_S_contig7445:286..422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7445 287..422 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.7094557-UTR-Ecto-sp13_S_contig7445:422..4621681464013.7094557-UTR-Ecto-sp13_S_contig7445:422..462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7445 423..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7445.18626.1prot_Ecto-sp13_S_contig7445.18626.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7445 133..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7445.18626.1

>prot_Ecto-sp13_S_contig7445.18626.1 ID=prot_Ecto-sp13_S_contig7445.18626.1|Name=mRNA_Ecto-sp13_S_contig7445.18626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
GNLRQVEHDQSGFSRGHTLAFLFVGESVCLATAAAAAVAAEHTAAAAENQ
KHVTPGSFFGGDACFPTSSSA*
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mRNA from alignment at Ecto-sp13_S_contig7445:133..462+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7445.18626.1 ID=mRNA_Ecto-sp13_S_contig7445.18626.1|Name=mRNA_Ecto-sp13_S_contig7445.18626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7445:133..462+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAATCTCCGGCAGGTCGAGCACGACCAGTCGGGATTCTCCCGCGGCCA
TACGTTGGCCTTCCTCTTTGTCGGTGAATCGTAAGCCTGTGCAAATGCCC
ACCAGCTGTTGGTTGCAGTATTGAGTGTCAGAGCCCGGATGTCTGCTTCT
GTAGTGTGTGTCTTGCCACAGCAGCGGCTGCCGCAGTAGCTGCTGAGCAC
ACAGCAGCAGCAGCGGAGAACCAAAAACATGTTACGCCTGGCTCGTTTTT
TGGCGGAGACGCTTGCTTCCCGACTTCAAGTTCGGCGTAGATGCCTTACT
ATCTCGAGGGACCGACCACAGATTGAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7445:133..462+

>mRNA_Ecto-sp13_S_contig7445.18626.1 ID=mRNA_Ecto-sp13_S_contig7445.18626.1|Name=mRNA_Ecto-sp13_S_contig7445.18626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7445:133..462+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAATCTCCGGCAGGTCGAGCACGACCAGTCGGGATTCTCCCGCGGCCA
TACGTTGGCCTTCCTCTTTGTCGGTGAATCTGTGTGTCTTGCCACAGCAG
CGGCTGCCGCAGTAGCTGCTGAGCACACAGCAGCAGCAGCGGAGAACCAA
AAACATGTTACGCCTGGCTCGTTTTTTGGCGGAGACGCTTGCTTCCCGAC
TTCAAGTTCGGCGTAG
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