mRNA_Ecto-sp13_S_contig7441.18623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7441.18623.1
Unique NamemRNA_Ecto-sp13_S_contig7441.18623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7441.18623.1 vs. uniprot
Match: D8LGR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR7_ECTSI)

HSP 1 Score: 687 bits (1772), Expect = 1.110e-245
Identity = 410/458 (89.52%), Postives = 415/458 (90.61%), Query Frame = 1 
Query:    1 QESRSLHEQFRSSMFSASKADRLNARTNISAGPGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNHLNLTPEGSAANLGGPXXXXXXXXXXXAPYPRMVGGDYSRDSASGSGYVGAYRTYNPSVGSASGGGDSTGYMNRGAPPAADDSVATGSVSHRSMSGGXXXXXXXXXXXXXXXXTAAA-DPFFHRVHGAXXXXXXXXXXGRVAAPHHQQPTRAIWEPRANGPPASRAAWHPDPSAEAEEPGDTSSSASSGGGDARLAQLHPQPSRDFHEHHQADSMGAIAPPEWPQDMPPVKTDSSSGGDALDHMGGGGAGVALTPAGYDEPLELPDGCHHISLAKFLEVMTGPGLRVRKHHRAGKGSSGLRVLRYDAEGDSLTWDSHKILGAAQHVLPMSDVENVSMQPGKRVVLMCVGGKDSYAVFEAANDDAAAVLYVAGLERLRERTQSRVDAV 1371
            +ESRSLHEQFRSSMFSASKADRLNART IS G GGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFN LNLTPEGSAA+LGGP   XXXXXX  APYPRM GGDY RDS SGSGY GAYRTYNP  GSASGGGDSTGYMNR  PPAADDSVATGSVSHRSMSG XXXXXXXXXXXXXX   AAA DPFFHRV   XXXXXXXXXX   A  HHQQ TRAIWEPRAN PPA R AW PDPS EAEEP DTSSSASSGGGDARLA+LHPQPSRDF EHHQADSMGAIAPPE PQDMPPV+TD  SGGDALDHMGGGGAGVALTPAGYDEPLELPDGCHHISLAKFLEVMTGPGLRVRKHHRAGKGSSGLRVLRY+AEGDSLTWDSHKILGAAQHVLPMSDVENVSMQPGKRVVLMCVGGKDSYAVFEAANDDAAAVLYV GLERLRERTQS VDAV
Sbjct:   21 EESRSLHEQFRSSMFSASKADRLNARTTISGGAGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNRLNLTPEGSAASLGGPGRGXXXXXX--APYPRMGGGDYYRDSGSGSGYAGAYRTYNP--GSASGGGDSTGYMNR--PPAADDSVATGSVSHRSMSGXXXXXXXXXXXXXXXGVGAAAMDPFFHRV-PXXXXXXXXXXXXXXAPHHHQQQTRAIWEPRANVPPAPRPAWQPDPSVEAEEPEDTSSSASSGGGDARLAKLHPQPSRDFQEHHQADSMGAIAPPERPQDMPPVRTDGGSGGDALDHMGGGGAGVALTPAGYDEPLELPDGCHHISLAKFLEVMTGPGLRVRKHHRAGKGSSGLRVLRYNAEGDSLTWDSHKILGAAQHVLPMSDVENVSMQPGKRVVLMCVGGKDSYAVFEAANDDAAAVLYV-GLERLRERTQSGVDAV 470
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BLAST of mRNA_Ecto-sp13_S_contig7441.18623.1 vs. uniprot
Match: A0A6H5J9D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9D1_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 2.400e-78
Identity = 216/457 (47.26%), Postives = 227/457 (49.67%), Query Frame = 1 
Query:    1 QESRSLHEQFRSSMFSASKADRLNARTNISAGPGGAGSSCDSSESTT-AARIDAAIKAAMAHDATRGANTFNHLNLTPEGSAANLGGPXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------APYPRMVGGDYSRDSASGSGYVGAYRTYNPSVGSASGGGDSTGYMNRGAPPAADDSVATGSVSHRSMSGGXXXXXXXXXXXXXXXXTAAADPFFHRVHGAXXXXXXXXXXGRVAAPHHQQPTRAIWEPRANGPPASRAAWHPDPSAEAEEPGDTSSSASSGGGDARLAQLHPQPSRDFHEHHQADSMGAIAPPEW 879
            +ESR+LHEQFRSSMFSAS+AD LN RT ISAGPGGA   CDSSES+T AARIDAAIKAAMA+DA RGA TFNHLNLTPEGSAA+LGGP       XXXX                                                                                                                                                                   AP+PR+VGGD    S SGSGYVGAY T+N               MNRGAPPAADDSVATGSVSHRSMSGG     XXXXXXXXX   AA D F+ RV G     XXXXX      PHHQQ TRAIWEPRANGP A RAAW PDPSAEA+EPGDTSSSASSGGGDARLA LHPQPSR FHEHHQA SMGAIAPPEW
Sbjct:   21 EESRTLHEQFRSSMFSASRADPLNPRTTISAGPGGADRYCDSSESSTSAARIDAAIKAAMANDANRGATTFNHLNLTPEGSAASLGGPPPPAWAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRRGGGAPHPRIVGGDSG--SGSGSGYVGAYATHNXXXXXXXXXXXXXXXMNRGAPPAADDSVATGSVSHRSMSGGSGSIGXXXXXXXXXVGAAAVDAFY-RVPGPSGGSXXXXX---XXXPHHQQQTRAIWEPRANGPRAPRAAWQPDPSAEAQEPGDTSSSASSGGGDARLANLHPQPSRGFHEHHQAGSMGAIAPPEW 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7441.18623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGR7_ECTSI1.110e-24589.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9D1_9PHAE2.400e-7847.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7441contigEcto-sp13_S_contig7441:1156..4288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1374
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005290.1
Cds size1374
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.4137516-CDS-Ecto-sp13_S_contig7441:1155..20341681464013.4137516-CDS-Ecto-sp13_S_contig7441:1155..2034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7441 1156..2034 +
1681464013.431685-CDS-Ecto-sp13_S_contig7441:2293..24581681464013.431685-CDS-Ecto-sp13_S_contig7441:2293..2458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7441 2294..2458 +
1681464013.4460504-CDS-Ecto-sp13_S_contig7441:2902..30671681464013.4460504-CDS-Ecto-sp13_S_contig7441:2902..3067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7441 2903..3067 +
1681464013.4548216-CDS-Ecto-sp13_S_contig7441:3425..35371681464013.4548216-CDS-Ecto-sp13_S_contig7441:3425..3537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7441 3426..3537 +
1681464013.463949-CDS-Ecto-sp13_S_contig7441:4235..42881681464013.463949-CDS-Ecto-sp13_S_contig7441:4235..4288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7441 4236..4288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7441.18623.1prot_Ecto-sp13_S_contig7441.18623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7441 1156..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7441.18623.1

>prot_Ecto-sp13_S_contig7441.18623.1 ID=prot_Ecto-sp13_S_contig7441.18623.1|Name=mRNA_Ecto-sp13_S_contig7441.18623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=458bp
QESRSLHEQFRSSMFSASKADRLNARTNISAGPGGAGSSCDSSESTTAAR
IDAAIKAAMAHDATRGANTFNHLNLTPEGSAANLGGPPPPAWAGGGGGAP
YPRMVGGDYSRDSASGSGYVGAYRTYNPSVGSASGGGDSTGYMNRGAPPA
ADDSVATGSVSHRSMSGGSGSTGGGGGRGSGGVGTAAADPFFHRVHGASG
ASGGSGGGGRVAAPHHQQPTRAIWEPRANGPPASRAAWHPDPSAEAEEPG
DTSSSASSGGGDARLAQLHPQPSRDFHEHHQADSMGAIAPPEWPQDMPPV
KTDSSSGGDALDHMGGGGAGVALTPAGYDEPLELPDGCHHISLAKFLEVM
TGPGLRVRKHHRAGKGSSGLRVLRYDAEGDSLTWDSHKILGAAQHVLPMS
DVENVSMQPGKRVVLMCVGGKDSYAVFEAANDDAAAVLYVAGLERLRERT
QSRVDAV*
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mRNA from alignment at Ecto-sp13_S_contig7441:1156..4288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7441.18623.1 ID=mRNA_Ecto-sp13_S_contig7441.18623.1|Name=mRNA_Ecto-sp13_S_contig7441.18623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7441:1156..4288+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAATCACGCTCGCTGCACGAACAGTTCCGGTCGTCCATGTTCTCCGC
CAGCAAGGCCGACCGCCTCAACGCGCGAACCAACATTTCGGCGGGGCCCG
GCGGGGCCGGCAGCTCCTGCGACTCGTCTGAGAGCACCACGGCCGCCCGC
ATCGACGCGGCCATCAAGGCCGCCATGGCCCACGACGCCACTAGAGGCGC
CAACACCTTTAACCACCTCAACCTGACCCCAGAAGGGAGCGCGGCGAACC
TCGGGGGCCCGCCACCCCCGGCCTGGGCCGGCGGCGGGGGGGGGGCACCG
TACCCCCGGATGGTCGGAGGAGACTACTCTCGAGACAGCGCCAGCGGCAG
CGGCTACGTCGGCGCTTACAGGACATACAACCCATCGGTAGGGAGCGCGT
CAGGCGGGGGCGACAGCACCGGTTACATGAACCGTGGGGCGCCCCCCGCC
GCGGACGACTCGGTGGCGACCGGGAGCGTGAGCCACAGGAGCATGAGTGG
CGGCAGCGGCAGCACCGGCGGCGGCGGCGGGCGCGGTAGCGGCGGCGTGG
GTACCGCCGCCGCGGACCCTTTTTTTCACCGCGTTCACGGCGCCAGCGGC
GCCAGCGGCGGAAGCGGAGGAGGAGGAAGGGTCGCGGCGCCACACCACCA
GCAGCCGACGCGAGCGATTTGGGAGCCAAGGGCGAACGGACCCCCCGCAT
CGAGAGCGGCGTGGCATCCCGACCCGTCGGCGGAGGCGGAGGAGCCAGGC
GACACGTCGTCCTCGGCGAGCAGCGGCGGCGGGGACGCACGCCTGGCGCA
GTTGCACCCGCAGCCGTCTCGAGATTTCCACGAGCACCACCAGGCGGACT
CGATGGGAGCGATCGCTCCGCCAGAATGGGTAAGTGGTGGCCTCTTGGTG
CTGAATGCTGGTGTGTGTTTTGAGTTATCCGTGCGGGCTGATTCGGCCTC
GCGTGCTCGTGTTGTTTTTTTCAAGACGATGCGTTTCCTCAACCCCCCCC
CATGCCCGCCCGGCCCCGCCCCTTGGCAACTACGCTCTCTTCTGTCGTTT
GTCCGTGCTGCCTCTTTCTATCCGTGTGGTTTAACCTGGTCCCGCCCGCT
TCCTGCCCCGACAACCACGACGATGATGACGACAACAGCCTCAAGACATG
CCTCCGGTCAAAACTGACAGCAGTAGCGGAGGCGACGCCCTCGACCACAT
GGGTGGGGGCGGTGCCGGGGTGGCCTTGACGCCCGCCGGCTACGACGAGC
CCCTTGAGCTGCCTGACGGCTGTCATCACATCTCTCTCGCGAAGTTTCTC
GAGGTGCAGAATTGATGTTTGAGAAGGTGTTCAATTTATCCAGTTTCTTT
CGGGGTTTTTGGGAGGCGGCAGTTGCGAAGTTTGTCGGGGGGGGGGCACT
GGCCATACCGTGGGCCCCGCTTTTGGCTTATGGTTGATTGCAGTCGCAGC
TCTCCCTCGTCGGCGTTGTCCGAAGATGGATTGAGATAATGTCCCAAGGG
TTGGTGAGTGCTGTAGACGCAGCACTTTTGGTGTTGAGGGTATTCTACCG
CAAATGGCTGTAGCCGTGTTGATGGCCGTGACACATGGAGGGTGATACCC
TCACACTGAAGTTCCCGCCTGACTGATTGAGTTGAGATTTTTGATAGGAG
GGAAAGGGGCGATGGACGCAAGCGGTGGGAGGTTCGTGCGACTCGGCTCT
GATACCAAAATCGCTTTAATCTCAACGCAGCAACTTTCGACTCTCAGGTG
ATGACTGGCCCGGGCTTGCGCGTCCGGAAGCACCATCGAGCGGGCAAGGG
CAGCTCGGGCTTGCGAGTTCTACGATACGACGCAGAAGGAGATAGCCTCA
CTTGGGACAGCCACAAGATCCTCGGGGCGGCGCAGCACGTGCTTCCGATG
AGTGACGTAGAGGTGAGGAGGGTGTTTGTGCTGCCGGTGATGGTGATGGT
AGTGGTTGCTTTCGGGGATGTACTATGAGGGCTCTTCTGTACGCATATGC
ATAATCTTTTGGAGTTGTGCGATGTACGATACGGGCTTGTTGTATGCAGA
ACCTTTTGAAGTGGTGCGATGTGTGCGTTACGAACGTGCCGTATCCATCC
CCTTTTGAAGTTGTGCGTTGCGCTCTCGCCGCCTTTGTCATTCTTGGCGA
CTTCCCTGACTGATTTTTTTGCGCACAACAGGTAGTCTCGACGGGTTTAG
AGTGTGCTTGACAACACATTCTTCCCATGTCTGTCCGCCGTCCTCTCCCG
AACAACACAACGCGCCGCAGAACGTGTCCATGCAGCCGGGCAAGCGGGTG
GTGCTGATGTGCGTCGGGGGGAAGGACAGCTACGCGGTGTTCGAGGCCGC
TAACGACGATGCGGCGGCGGTTCTCTACGTTGGTGAGGACGTAAAAGAAA
CTACTTCAGTGGAGAGATGGTCGTTCTTTTAAGAAAGTAAAACATATCGT
TGGATGGAGATTGATTTATGGTGTTGTATGAAAAAGAAAACAGCAAATGT
CCGCGGGTAGAAAAGTGGGTTTATGGAGAGTGAAAATTAAAATTGGAAAC
TGGCCTCAGAAAATGAAAATCCAAACGCTGCTTGAGCGACAACAAGCCGA
TTACCGGTATGGAAGAAGACCAAGCTGCGGACAGCCCCTCTCTTGCAAGA
AAAATTGACTTAATCGCGCTGCAAGTATTGCGGATAGCCCTCGTTGGTGA
ACGTTGACGACGCCATGTAACAGTGTGGCTGCGTGGTTGCACTGAAGTGC
TGGTATTGTTTAGTGCTAAAGGGATCACGTGGGTCCACGCATGCTCTTGC
ACAGCTGACAGGTTGGCCCCCCTCTGCTCCTCCCCGAATCAATCGCGACT
TACCATACCGCTCTCTCTGATGTATTTTCTCCCTCTCTCGTCTTCTCCCC
CTCCCGCTCCTGCTCTCTCTCTCTCCCTCTTTGCCTACCTATCTGTCTCT
GTCTGTCTCTGACTGTCGCTGTCTCTGCCCCCCCTCCCTTCTCTCTGTCT
CTCTCGCCCCCCCTCTCTCCCGCGCTCTATCCCGCATTTTTTCCCTCTCG
CTAATGTTGTTGGAAACCAACCAATCGGAGCAGGACTGGAACGATTGCGA
GAGCGGACGCAGTCAAGAGTGGACGCGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7441:1156..4288+

>mRNA_Ecto-sp13_S_contig7441.18623.1 ID=mRNA_Ecto-sp13_S_contig7441.18623.1|Name=mRNA_Ecto-sp13_S_contig7441.18623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1374bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7441:1156..4288+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAATCACGCTCGCTGCACGAACAGTTCCGGTCGTCCATGTTCTCCGC
CAGCAAGGCCGACCGCCTCAACGCGCGAACCAACATTTCGGCGGGGCCCG
GCGGGGCCGGCAGCTCCTGCGACTCGTCTGAGAGCACCACGGCCGCCCGC
ATCGACGCGGCCATCAAGGCCGCCATGGCCCACGACGCCACTAGAGGCGC
CAACACCTTTAACCACCTCAACCTGACCCCAGAAGGGAGCGCGGCGAACC
TCGGGGGCCCGCCACCCCCGGCCTGGGCCGGCGGCGGGGGGGGGGCACCG
TACCCCCGGATGGTCGGAGGAGACTACTCTCGAGACAGCGCCAGCGGCAG
CGGCTACGTCGGCGCTTACAGGACATACAACCCATCGGTAGGGAGCGCGT
CAGGCGGGGGCGACAGCACCGGTTACATGAACCGTGGGGCGCCCCCCGCC
GCGGACGACTCGGTGGCGACCGGGAGCGTGAGCCACAGGAGCATGAGTGG
CGGCAGCGGCAGCACCGGCGGCGGCGGCGGGCGCGGTAGCGGCGGCGTGG
GTACCGCCGCCGCGGACCCTTTTTTTCACCGCGTTCACGGCGCCAGCGGC
GCCAGCGGCGGAAGCGGAGGAGGAGGAAGGGTCGCGGCGCCACACCACCA
GCAGCCGACGCGAGCGATTTGGGAGCCAAGGGCGAACGGACCCCCCGCAT
CGAGAGCGGCGTGGCATCCCGACCCGTCGGCGGAGGCGGAGGAGCCAGGC
GACACGTCGTCCTCGGCGAGCAGCGGCGGCGGGGACGCACGCCTGGCGCA
GTTGCACCCGCAGCCGTCTCGAGATTTCCACGAGCACCACCAGGCGGACT
CGATGGGAGCGATCGCTCCGCCAGAATGGCCTCAAGACATGCCTCCGGTC
AAAACTGACAGCAGTAGCGGAGGCGACGCCCTCGACCACATGGGTGGGGG
CGGTGCCGGGGTGGCCTTGACGCCCGCCGGCTACGACGAGCCCCTTGAGC
TGCCTGACGGCTGTCATCACATCTCTCTCGCGAAGTTTCTCGAGGTGATG
ACTGGCCCGGGCTTGCGCGTCCGGAAGCACCATCGAGCGGGCAAGGGCAG
CTCGGGCTTGCGAGTTCTACGATACGACGCAGAAGGAGATAGCCTCACTT
GGGACAGCCACAAGATCCTCGGGGCGGCGCAGCACGTGCTTCCGATGAGT
GACGTAGAGAACGTGTCCATGCAGCCGGGCAAGCGGGTGGTGCTGATGTG
CGTCGGGGGGAAGGACAGCTACGCGGTGTTCGAGGCCGCTAACGACGATG
CGGCGGCGGTTCTCTACGTTGCAGGACTGGAACGATTGCGAGAGCGGACG
CAGTCAAGAGTGGACGCGGTATGA
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