mRNA_Ecto-sp13_S_contig74403.18622.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74403.18622.1
Unique NamemRNA_Ecto-sp13_S_contig74403.18622.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: D7FWK8_ECTSI (NAD_binding_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.630e-20
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 AEGQYALTIDAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPPDARYSSTTTFVRSH 174
            AEGQYALTIDAGDIAKEYT PGQYVQIKVTSSAKP FFAIASPPDA   S    ++ +
Sbjct:   87 AEGQYALTIDAGDIAKEYTAPGQYVQIKVTSSAKPGFFAIASPPDASSGSLEFLIKEN 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: A0A6H5JM17_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM17_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.860e-18
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 EGQYALTIDAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPPDARYSSTT 156
            EG YALTID GDIAKEYTVPGQYVQIKVTSS KP FFAIASPPDAR +  T
Sbjct:  344 EGHYALTIDVGDIAKEYTVPGQYVQIKVTSSDKPRFFAIASPPDARENDAT 394
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: A0A427B7K7_ENSVE (FAD-binding FR-type domain-containing protein (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427B7K7_ENSVE)

HSP 1 Score: 52.4 bits (124), Expect = 4.220e-6
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   28 DAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPP 132
            DA D+A  YTVPGQY+Q++V +S KP+F AIASPP
Sbjct:   18 DAPDLAVSYTVPGQYLQLRVPASEKPSFLAIASPP 52
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: A0A444GEM2_ENSVE (FAD-binding FR-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444GEM2_ENSVE)

HSP 1 Score: 51.6 bits (122), Expect = 2.020e-5
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   28 DAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPP 132
            DA D+A  YTVPGQY+Q++V +S KP+F AIASPP
Sbjct:   78 DAPDLAISYTVPGQYLQLRVPASDKPSFLAIASPP 112
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: A0A4S8IWW3_MUSBA (FAD-binding FR-type domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8IWW3_MUSBA)

HSP 1 Score: 52.0 bits (123), Expect = 2.740e-5
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   28 DAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPP 132
            DA D+A  YTVPGQY+Q++V +S KP+F AIASPP
Sbjct:   77 DAPDLAVSYTVPGQYLQLRVPASDKPSFLAIASPP 111
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: A0A835XUZ0_9CHLO (FAD-binding FR-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUZ0_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 5.410e-5
Identity = 41/105 (39.05%), Postives = 50/105 (47.62%), Query Frame = 1 
Query:   13 YALTIDAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPPDARYSSTTTFVRSHLIEDA---ALLLLCLLP*ETHNFTSHSGGNG*TSLGLVLA*ARWPLSSTPA 318
            + L +D G +A  YTVPGQ+VQ+KV  S KP FFAIAS P A  +    F    LI+ A      LLC +        S   G G           R P +STPA
Sbjct:  107 HRLVLDVGPLAAGYTVPGQFVQVKVGDS-KPGFFAIASAPGAGPAGQLEF----LIKGAPGSTSELLCNIAAGAEVLVSPPMGKG-------FPLDRLPAASTPA 199
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Match: A0A1R3GBC8_COCAP (Phenol hydroxylase reductase n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GBC8_COCAP)

HSP 1 Score: 50.4 bits (119), Expect = 9.640e-5
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:    1 AEGQYALTIDAGD---IAKEYTVPGQYVQIKVTSSAKPNFFAIASPPDARYSSTTTFVRSHLIEDAALLLLC 207
            AE  + ++ID  D   +A  YT+PGQY+Q+KV    KP+F AIASPP    +S         +  +   LLC
Sbjct:   67 AESLFHISIDVSDSPDLAASYTLPGQYLQLKVPDVDKPSFLAIASPPSLATTSGAFEFLVKTVAGSTAELLC 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74403.18622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FWK8_ECTSI7.630e-2077.59NAD_binding_1 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JM17_9PHAE4.860e-1884.31Reverse transcriptase domain-containing protein (F... [more]
A0A427B7K7_ENSVE4.220e-665.71FAD-binding FR-type domain-containing protein (Fra... [more]
A0A444GEM2_ENSVE2.020e-565.71FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A4S8IWW3_MUSBA2.740e-565.71FAD-binding FR-type domain-containing protein n=3 ... [more]
A0A835XUZ0_9CHLO5.410e-539.05FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A1R3GBC8_COCAP9.640e-538.89Phenol hydroxylase reductase n=2 Tax=Corchorus Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74403contigEcto-sp13_S_contig74403:290..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score92.8
Seed ortholog evalue7e-17
Seed eggNOG ortholog2880.D7FWK8
Model size372
KEGG koko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Oxidoreductase NAD-binding domain
EggNOG OGs2QQ7C@2759,COG0543@1
Ec32 ortholog descriptionOxidoreductase FAD/NAD(P)-binding
Ec32 orthologEc-11_002290.1
Cds size219
COG Functional cat.CH
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.3691761-CDS-Ecto-sp13_S_contig74403:289..5081681464013.3691761-CDS-Ecto-sp13_S_contig74403:289..508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74403 290..508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.380623-UTR-Ecto-sp13_S_contig74403:508..6611681464013.380623-UTR-Ecto-sp13_S_contig74403:508..661Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74403 509..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74403.18622.1prot_Ecto-sp13_S_contig74403.18622.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74403 290..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74403.18622.1

>prot_Ecto-sp13_S_contig74403.18622.1 ID=prot_Ecto-sp13_S_contig74403.18622.1|Name=mRNA_Ecto-sp13_S_contig74403.18622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
AEGQYALTIDAGDIAKEYTVPGQYVQIKVTSSAKPNFFAIASPPDARYSS
TTTFVRSHLIEDAALLLLCLLP*
back to top

mRNA from alignment at Ecto-sp13_S_contig74403:290..661+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74403.18622.1 ID=mRNA_Ecto-sp13_S_contig74403.18622.1|Name=mRNA_Ecto-sp13_S_contig74403.18622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74403:290..661+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGAGGGCCAGTACGCGCTGACGATCGACGCCGGGGACATCGCCAAGGA
GTACACGGTACCAGGCCAGTACGTGCAGATCAAGGTAACCTCCAGCGCCA
AGCCGAACTTCTTCGCGATCGCCTCTCCCCCGGATGCCAGGTACAGCAGC
ACTACCACGTTTGTCCGATCTCATCTGATCGAGGACGCCGCACTCTTGTT
GTTGTGCTTGCTTCCCTAGGAAACCCACAACTTCACCTCGCACTCGGGGG
GTAATGGTTGAACCTCACTCGGACTCGTGCTGGCATGAGCACGCTGGCCG
CTTTCCAGCACCCCCGCTCGCTCGCCCGCTGGCTCTCTCTCCATCCCTCT
TGAGCTGCTGAATAGCATCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74403:290..661+

>mRNA_Ecto-sp13_S_contig74403.18622.1 ID=mRNA_Ecto-sp13_S_contig74403.18622.1|Name=mRNA_Ecto-sp13_S_contig74403.18622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74403:290..661+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGAGGGCCAGTACGCGCTGACGATCGACGCCGGGGACATCGCCAAGGA
GTACACGGTACCAGGCCAGTACGTGCAGATCAAGGTAACCTCCAGCGCCA
AGCCGAACTTCTTCGCGATCGCCTCTCCCCCGGATGCCAGGTACAGCAGC
ACTACCACGTTTGTCCGATCTCATCTGATCGAGGACGCCGCACTCTTGTT
GTTGTGCTTGCTTCCCTAG
back to top