mRNA_Ecto-sp13_S_contig7437.18616.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7437.18616.1
Unique NamemRNA_Ecto-sp13_S_contig7437.18616.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7437.18616.1 vs. uniprot
Match: D7FNQ2_ECTSI (Guanylate-binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ2_ECTSI)

HSP 1 Score: 825 bits (2131), Expect = 3.830e-290
Identity = 493/585 (84.27%), Postives = 510/585 (87.18%), Query Frame = 1
Query:    1 QMVDGEGQDQSPAAHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDLEKLQDLDPMRYSDLSDAYRGGVKTAVDLIVPECAPKELGGKTMDGTALATFLRKLTRVMNVPVVAGNDRFSTLLDVLETGELQAAEAAYRAEWERGENNYQGLPTGAENLIAKHSECVKRAELVADPRSSSXXXXXXXGGAVQDGDEAGASDGRSLRRPGFVQALHAALSGLYREYCLINVRLWSDGEIFGADEDLRALLKENQEEQRSGPGEQGDGDPELPPPPPEYSHVTAVFDSRRQRWNGDLVPDIIRSHPDMEALLVVRGDDSAMPGTGELTAEHVEALWHVVDSFLEQSLATATQQASEAFEDRMNDLDAEVRDLPRPPHLADVEMLSSNAKTAALDAYLAVKLAVGDDKAKETAAAQGWAGQAEAATRRWMTEAQQAVRGAGNGGGXXXDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------LAERVLRESHAPCVEKVTLKTNHVEKCLAKCRKIADEEWAQGREESDKQELLDERKPMVLDNAMDEKESEHA 1734
            +MVDGEGQDQSPAAHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDLEKLQDLDPMRYSDLSDAYRGGVKTAVDLIVPECAPKELGGKTMDGTALATFLRKLTRVMNVPV AGNDRFSTLLDVLE GELQAAE AYRAEWE GENNY+GLPTGAENL AKHS+CV+RAELVADPRS+S       G A QDGD+ GASDGRSLRRPGFVQALHA LSGLYREYC+ NVRLWSD EIFGA+EDL ALLKE QE+QRSGPGEQ            EYSHVTAVFDSR QRWNGD+VPDII SH DMEALLVVRGDDSAMP TGELTA H  ALW VVDSFLE+SLA ATQQA EAFED+M++LDAEVRDLPRPPHLADVEMLSS AKTAALDAYLAVKLAVGDDKA ETA AQGWAGQAEAAT RWM+EAQQAVRGAGN G XXX  XXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX                LAERVL+E HAPCVEKVTLKTNHVEK LAKCRKIA+EEWAQGREESDKQELLDERKP VLD AMDEKESEHA
Sbjct:  272 KMVDGEGQDQSPAAHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDLEKLQDLDPMRYSDLSDAYRGGVKTAVDLIVPECAPKELGGKTMDGTALATFLRKLTRVMNVPVTAGNDRFSTLLDVLEGGELQAAEVAYRAEWEPGENNYEGLPTGAENLKAKHSKCVERAELVADPRSASSSSSGTGGVAGQDGDQEGASDGRSLRRPGFVQALHAVLSGLYREYCIANVRLWSDAEIFGANEDLGALLKEKQEQQRSGPGEQXXXXXXXXXXXXEYSHVTAVFDSRSQRWNGDIVPDIISSHADMEALLVVRGDDSAMPPTGELTAGHTGALWRVVDSFLEKSLAIATQQAQEAFEDQMDNLDAEVRDLPRPPHLADVEMLSSKAKTAALDAYLAVKLAVGDDKATETAIAQGWAGQAEAATGRWMSEAQQAVRGAGNDGDXXXXXXXXXXXXAGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGGDGGDGGVGVDEAVALAERVLKERHAPCVEKVTLKTNHVEKSLAKCRKIANEEWAQGREESDKQELLDERKPTVLDKAMDEKESEHA 856          
BLAST of mRNA_Ecto-sp13_S_contig7437.18616.1 vs. uniprot
Match: A0A6H5L2D9_9PHAE (GBP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D9_9PHAE)

HSP 1 Score: 785 bits (2027), Expect = 1.380e-272
Identity = 470/582 (80.76%), Postives = 490/582 (84.19%), Query Frame = 1
Query:    1 QMVDGEGQDQSPAAHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDLEKLQDLDPMRYSDLSDAYRGGVKTAVDLIVPECAPKELGGKTMDGTALATFLRKLTRVMNVPVVAGNDRFSTLLDVLETGELQAAEAAYRAEWERGENNYQGLPTGAENLIAKHSECVKRAELVADPRSSSXXXXXXXGGAVQDGDEAGASDGRSLRRPGFVQALHAALSGLYREYCLINVRLWSDGEIFGADEDLRALLKENQEEQRSGPGEQGDGDPELPPPPPEYSHVTAVFDSRRQRWNGDLVPDIIRSHPDMEALLVVRGDDSAMPGTGELTAEHVEALWHVVDSFLEQSLATATQQA----SEAFEDRMNDLDAEVRDLPRPPHLADVEMLSSNAKTAALDAYLAVKLAVGDDKAKETAAAQGWAGQAEAATRRWMTEAQQAVRGAGNGGGXXXDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAERVLRESHAPCVEKVTLKTNHVEKCLAKCRKIADEEWAQGREESDKQELLDERKPMVLDNAMDEKESEHA 1734
            +MVDGEGQ+QSP AHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDLEKLQDLD MRYSDLSDAYRG VK AVD+IVPECAPKELGGKTMDGTALATFLRKLTRVMNVPVVAGNDRFSTLLDVLE GEL+AAEAAYRAEWERGENNY+GLPTGAENL A+H+E V+RAELVADPRSSSXXXXXXX    QDGD+AGASD RSLRRPGFVQALH  L GLY EYCL NVRLWSD EIFGA+EDL AL +E QE+QRSG                EYSHV AVF+ RRQRWNGD+VPDII SHPDMEALLVV GDDSA P TGELTA H+EALW VVDSFLEQSLATATQQA     EAFEDRM+DLDAEVRDLP PPHLADV+MLSS A T ALDAYL VKLAVGDDKAKETA AQGWAGQAEAATRRW+ EA +AVR AGN GG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       LAERVL+E HAPCVEKVTLKTNHVEK LAKCRKIADEEWAQGREESDKQELLDERKP VLD AMDEKESEHA
Sbjct:  275 KMVDGEGQEQSPTAHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDLEKLQDLDRMRYSDLSDAYRGDVKAAVDVIVPECAPKELGGKTMDGTALATFLRKLTRVMNVPVVAGNDRFSTLLDVLEAGELRAAEAAYRAEWERGENNYEGLPTGAENLKARHNEYVRRAELVADPRSSSXXXXXXXXXXGQDGDQAGASDVRSLRRPGFVQALHTVLRGLYWEYCLTNVRLWSDAEIFGANEDLGALRREKQEQQRSGXXXXXXXXXXXXXXXXEYSHVKAVFERRRQRWNGDIVPDIISSHPDMEALLVVMGDDSATPRTGELTAVHIEALWRVVDSFLEQSLATATQQAIHSAQEAFEDRMDDLDAEVRDLPMPPHLADVDMLSSKANTTALDAYLVVKLAVGDDKAKETAIAQGWAGQAEAATRRWIMEAHEAVRRAGNDGGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVA--------------------LAERVLKERHAPCVEKVTLKTNHVEKSLAKCRKIADEEWAQGREESDKQELLDERKPTVLDKAMDEKESEHA 836          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7437.18616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNQ2_ECTSI3.830e-29084.27Guanylate-binding protein, putative n=1 Tax=Ectoca... [more]
A0A6H5L2D9_9PHAE1.380e-27280.76GBP domain-containing protein (Fragment) n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7437contigEcto-sp13_S_contig7437:1028..7368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score833.6
Seed ortholog evalue5.8e-239
Seed eggNOG ortholog2880.D7FNQ2
Model size1743
KEGG koko:K20899
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
Ec32 ortholog descriptionGuanylate-binding protein, N-terminal
Ec32 orthologEc-01_004670.1
Cds size1740
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7437.18616.1prot_Ecto-sp13_S_contig7437.18616.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7437 1031..7368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464012.491074-UTR-Ecto-sp13_S_contig7437:1027..10301681464012.491074-UTR-Ecto-sp13_S_contig7437:1027..1030Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7437 1028..1030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464012.506783-CDS-Ecto-sp13_S_contig7437:1030..11281681464012.506783-CDS-Ecto-sp13_S_contig7437:1030..1128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 1031..1128 +
1681464012.5171762-CDS-Ecto-sp13_S_contig7437:2283..23791681464012.5171762-CDS-Ecto-sp13_S_contig7437:2283..2379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 2284..2379 +
1681464012.5283024-CDS-Ecto-sp13_S_contig7437:2682..28091681464012.5283024-CDS-Ecto-sp13_S_contig7437:2682..2809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 2683..2809 +
1681464012.5439541-CDS-Ecto-sp13_S_contig7437:3237..33871681464012.5439541-CDS-Ecto-sp13_S_contig7437:3237..3387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 3238..3387 +
1681464012.5622005-CDS-Ecto-sp13_S_contig7437:3998..41991681464012.5622005-CDS-Ecto-sp13_S_contig7437:3998..4199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 3999..4199 +
1681464012.5812476-CDS-Ecto-sp13_S_contig7437:4687..47471681464012.5812476-CDS-Ecto-sp13_S_contig7437:4687..4747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 4688..4747 +
1681464012.5971081-CDS-Ecto-sp13_S_contig7437:5637..57771681464012.5971081-CDS-Ecto-sp13_S_contig7437:5637..5777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 5638..5777 +
1681464012.6123729-CDS-Ecto-sp13_S_contig7437:6052..62421681464012.6123729-CDS-Ecto-sp13_S_contig7437:6052..6242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 6053..6242 +
1681464012.6238508-CDS-Ecto-sp13_S_contig7437:6690..73681681464012.6238508-CDS-Ecto-sp13_S_contig7437:6690..7368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7437 6691..7368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7437.18616.1

>prot_Ecto-sp13_S_contig7437.18616.1 ID=prot_Ecto-sp13_S_contig7437.18616.1|Name=mRNA_Ecto-sp13_S_contig7437.18616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=580bp
MVDGEGQDQSPAAHLDGALGVSGVGTVKDAFDRFFVRTNAARLPYPVNDL
EKLQDLDPMRYSDLSDAYRGGVKTAVDLIVPECAPKELGGKTMDGTALAT
FLRKLTRVMNVPVVAGNDRFSTLLDVLETGELQAAEAAYRAEWERGENNY
QGLPTGAENLIAKHSECVKRAELVADPRSSSSSSSGTGGGAVQDGDEAGA
SDGRSLRRPGFVQALHAALSGLYREYCLINVRLWSDGEIFGADEDLRALL
KENQEEQRSGPGEQGDGDPELPPPPPEYSHVTAVFDSRRQRWNGDLVPDI
IRSHPDMEALLVVRGDDSAMPGTGELTAEHVEALWHVVDSFLEQSLATAT
QQASEAFEDRMNDLDAEVRDLPRPPHLADVEMLSSNAKTAALDAYLAVKL
AVGDDKAKETAAAQGWAGQAEAATRRWMTEAQQAVRGAGNGGGGGGDAGG
GGDAGGKDAGAGNDGGAGGGGGGDSGDGGDGGDGGDGGDGGGGGDGGVGV
DEAVALAERVLRESHAPCVEKVTLKTNHVEKCLAKCRKIADEEWAQGREE
SDKQELLDERKPMVLDNAMDEKESEHADR*
back to top

mRNA from alignment at Ecto-sp13_S_contig7437:1028..7368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7437.18616.1 ID=mRNA_Ecto-sp13_S_contig7437.18616.1|Name=mRNA_Ecto-sp13_S_contig7437.18616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7437:1028..7368+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGGTGGATGGAGAAGGACAGGACCAGAGTCCCGCAGCTCACTTGGA TGGCGCGCTTGGAGTCTCGGGGGTCGGGACGGTCAAAGACGCCTTCGACA GGTATGGTGGGTGTCGCATATGCGGTGCCCCCTTTGGCGGTACCTCCTGG GATCATTCTGTAGTATGACAAATATCTGGTTGTGGGGTCCCTTTGGGGTA CCTACTCAGCCTCGAGTCACGCGTGCTGTACTGTGAGGCTTCTTCGCGGG GCGGGGTGGAGGGGAGGGGGACGGGTATAGTCATAGTCGTGCATGCGGTA GTCGTTGGACCATTGACCTCGCATCCCTACAAAGCCGAGACGGAGCACGT CGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAACTCCGTG AGGTATTCGACGAGTCGCACGAAGGGTGCGCTGTATCCTGCTAAGGGTGA TCGGCATCTTGTCCTTACTTCCTTGCGTACGGATGACAGCTACGTATGAC TTGATTTATTTTCTTGTGCTTTCACTTTCAGAGACAGTTGTTAGCACTAT GTAACTACCTCGAGGGTGCTTGGCCAATTTAACGCAACGTGGTGCGATCA TCCCCTTTGCGCGGAGTGGGGGTTCTCGACCCCACACAACGTAATCTACT CGACCATCATTCATGGTTACCGCAAAAATAAATAACCAAAGGCAAAAAAA TAAGCCTTAACCTTTTTGCCGAGCTCACGAAGTGATCGGCTTGTTTTACA ACATCGCTGCCAAGCGACGAAAACCCCACCCGATGGCAAACACCGGGGGG GGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCC GATGGCAAACACCGGGGTGGGAGGTGGGGGGTGGGGGGCATTTCTGGCTT GGTTTCTACGAATGATTCGTTATTGGCGATTGGGGCGCGGCCCGTTCCCA CCGCTGTCCCTTGAAGCACATCTGTCAGTACGCGTGGGCCACCTTTTTGT CGTGAGGTGGGGGGACGTCGTTGCTTGCTGATGGAGGTAGGTGATTTCAA TTGCTGTGTGTTCCCCCTAATGTTTTTCTTTGGTGTTTGCATAGGTGTTT GTTCCCACGGACCTTTCTGTTGACACCCAAACGTTGTGCGTGTCGAATTG TGTCCACGGTGTCGTTCTGAACTGCCCGTCAACAACCTGCGGACGGACTT CACGAAGCGTCCGCTGTGTGTCGATCGTTCGTACGTCCGTACGCACCCGC TACCAGGTTCTTCGTGCGGACGAATGCGGCTCGACTGCCCTATCCGGTGA ACGACCTCGAAAAGCTGCAAGACCTCGACCCCATGCGCTACTCGGACCTA AGGTAAGTAGGTGCTGACGTCGACGTCGACATCATCATCGTGTGTTTGTC CTGCTGATTGGTATCGTACCAGATGGTACGAGTAATGTGGCGGTGTGAGG TTTGGCGTCGTGAGTGCGATCGAGTGCTGACCCCCCCGCGTTGTCTGTTG CGTGTGTTTGAGTCGAAGCTCTTCGCCGTAGGCCTTTTGTCTTGCCGTGT CTCCAGTTTTCAATGCCTCTCTCCCCTCACCCCACGTTCTCTGTCTGTCT GTCTGTCTGTCTCTCCCTCTCTCCCTCTCTCCCTCTCCTCGTAACCGCAA TACAGCGATGCTTACCGAGGGGGTGTGAAGACAGCGGTGGACCTCATCGT GCCGGAGTGCGCTCCGAAGGAGCTCGGCGGGAAGACGATGGACGGCACCG CTCTGGCAACGTTTTTACGCAAACTGACGCGGGTACGTGCCTCCCACGAC ACTTGTGTCCGACACAACCGACAGCAGCATTTTCTACCCCCAACCTATCC TGTTGTGGATGGCAGGCAGGTGTAATGGAAGCGTGGAGTCCATGCGGGGA CGCAGTTCAAAGTGTAGGGAGAACCGACCCTCAGAGCCGATCAGAGAACA TGGGAAGTCGAGACGTTATTCCGACCCATATTTTGCTTTCTTTGCTTTCT CAAACTGATGTGGGTGAGGCACAGGCTGGCCTGTTGTGCAAATGGAAGCT ATCGGGAGCCGTTCAATTTAGTGAATGCTTATCCCGATATGGTTTTGGCG GGTACTCCTCCTTCTCCTGCTGCTGCTTCTGCTGCGCCTCTGCTGACTGT TTTTGGTGGTGCTGCTGCTGCTGAAAACTGTGTTCGTTGCTACCGCTGCT ACCGCTGCAGGTGATGAACGTCCCCGTGGTCGCTGGCAACGATCGTTTCT CGACGCTCTTGGACGTGCTAGAAACGGGAGAGCTGCAAGCCGCCGAAGCC GCGTACAGGGCTGAATGGGAGCGTGGCGAAAACAACTACCAAGGCTTGCC AACCGGAGCGGTGCGTGCCACACGGCAGACAAGACATTGGGGGAAGATGT CAGCTGTTTCAGAATGCCATCCGTTCTGATGTGTAGTCGCGATGCGGTGC ATGGCTCATCGTATTGAATGTGTCTTTTTTTTTGTACTGGCATCACGATG CTATGTCCTGCTGACATTACCAGCGTCGTGCACAGCTACCTAATGTTCGT GGTGGTTGTCGCTGTTGGCGTGCTTAGTATCTGGATGTCACGAATGGTGA CTGTTTGATCTTGACGCGGGTATCGGCAGTGGAGATGGAGATAAGCAATG ATCGGTTGCATCGTCCGACAGATGAAACCCAGACACGCTGCTGATGATCG GATCGGATCCATGCGACGAGTTCGTGTTGTTTTACGGCGTATTGGTTTGA TTCTGTGACGCTTTAACTGCCGTGTCAATCTCTTGCAATTCGACTCGAAG CGATTGGATTTCATCTCACCCGCCCCTGATTTTTCGTGTCACCAGGAAAA ATTTTGTGGCGTTTCGAGTGAACCGACTAAATAATAGAAAGCCGCATACC TCAAAGTCCACAACCCCCCCCCCCACACTGTTGGCATTGTCATCTTCCGC GTGTTTCCCTACACTCGGCAGGAGAATTTAATTGCCAAGCATAGCGAGTG CGTGAAGCGCGCCGAGCTTGTGGCGGACCCTCGGTCCTCCTCCTCTTCCT CTTCCGGTACCGGGGGGGGGGCGGTGCAGGACGGAGATGAAGCGGGCGCG AGCGACGGCCGGTCCCTCCGACGGCCGGGATTTGTCCAAGCGTTGCACGC TGCCTTGAGCGGACTTTACCGGGTGAGAGCCAGAGAGACATGGTGGCAGG ACATGGAGAGCGGACGCGTTGGGGGCACGTGTGTGGATGGATGCGTGTGG CGCCACATGGGTGGTGTAAGTGTGTGTTACAGGGCGGTAGCATCTGTATG TTAAGTGCTCGTCGTTCACCCAATGGCATGGCACGACCGCCTTTCCGTTG ACACCCTGTTGTATTGTTTTAGTCGTTTCAAGTCACGGCAGCGCGTGTGA GGTACCAGTGGTCCCGGCCTTCCTCGGATGCGACAGACGACACCGCAACA AAATTGTCGCTCTGCAGCGAGACTGTTATTGTGGTGGCCGTCTTATTGTT CGTGGCATATTTGTTTCTTTGTTCCTGTCCTTTCCGAGTCTTTTCTTGCA GTGAAATCTCCCCTTCTTTGTTCCTCTCCTCCTTCTGCTATTCCCTCCTT CTCTACACTTTGCGTCCTTCTCAATCTTTTTTCTTGTTCCTCCTCCCGGT TCCGCCTCAGGAATACTGCTTGATCAACGTGCGGCTGTGGTCGGATGGCG AGATTTTTGGAGCGGACGAGGTAGGCCGTGTATTTTTGCCATCGTCGTGC CTTCCGCTCTCTTGCACGGCCTCTGTCCCGGCCAGTGGGTACGGGGTGTA CTCGTTTTCTTCGCCTCCGTCCATCGCGGCGGGCGGCTTGCGGGGAGGAG GATCTTGATGTGGAGTGCGGTGTTATGGTGGTGCTGGGCTGTTGGCGTTC AGCAGCAAAACCCAACCCAGGCCGGGGGTGTACGGCGCACCGTCACCCCG AGAGACGTCGTCCTTTGTGCTGTATGTGCTGCTTGCTCTGTGGTGATGGT GGTGGTAGTGGTGGTGATATTGTTATTGCTGCGTGGTCGTGGTGGTGCTG GCAGTGCCTCTTTTGTTGTGACGGGAACGAAACCCAAAATGTGGGTCAGA TACGATTGAACCGCCTTTGGGACCGAGGTTTGGGTTAGGTGTCTGGCTAT GGATTGTAGATACGTATACAACCTTGACCATCGTTAGGGAAGAATACCGA AAGGATCGTTCCATCTTTCTTTCTGTTCCTCTTAGAGCCAGTTTGTGCAG GCAGGCAATTCGCGGTACATGGCACGGAGACCAGTTTCCTACCGAAGCCC CCCCCCCCCTCCCACGCCCGATCTGTGGAGTTCGGGTACATACACTTGGC TGTGTGACGAAAACAACACAGGGGGCAGGTGTCTCGAGCCTCAGCAGGAG GAAGTACTAACCATGGTCTCCGTAGGTTAGGATGATGGTGACTCTGCTGC TGCTGTGACACAGGGAACTCCCCTGGAAAGACAGAGTAGGGGTGAGCCTG GCTTGTGCTCCTCGCGAGCGCCGGTTAATGCCACAATACCCGACACGATT AATGTGCGTGATGCTCCGTCCCTCCCTCCCCCCCTCATGTGCTCCCCCCT GGCATCACAGGACTTGAGGGCGCTGCTCAAGGAGAATCAGGAGGAGCAGC GTTCGGGGCCAGGAGAACAAGGGGATGGAGATCCGGAGCTTCCGCCACCG CCGCCGGAGTACTCGCACGTGACAGCTGTGTTCGACAGCCGGAGGCAAAG GTTCGCGTGTGACGCAGAAAAACATGTTGTTCTTCATTAATGGCTGTAAT AGCGCGGACGACTTGGGCGATACGGTTGTAGTAGTAGACGCTCGTTGCCC GGGGGGGGCACACCTACAAGAATCCAATCTGCGTTGACGCGTTAGTTGTT TGTCCCAACAACGTTTGGCGGGGTGCTTGCCCAAGCTTTTACCCCCCGCA TTCGTTACTTTATCCTCGAATTCTGTGGGAGTTCCGACAGTTTTCTTTTG ATTGATTTCGCCCCCGCGCTACTAGGTGGAACGGAGATCTTGTCCCGGAC ATCATCAGATCACACCCGGATATGGAAGCGTTGTTGGTCGTCAGGGGTGA TGATTCGGCCATGCCCGGTACCGGAGAACTGACGGCAGAACACGTCGAAG CCCTCTGGCACGTTGTGGATAGTTTCTTGGAGCAAAGCCTCGCCACAGCC ACGCAACAGGCGAGTGTAAGACTAGATTGTTTGTCGTCGTCGTCTTCGTT ATTTTGACTCAGCGAACTGTTCATCCCTTTCTTTCACATATACGAGTCCG AGATACATCTTACAATGAGTCCATACGGTGGCGTTTTATGATGGTGATTC TTGTTTTTCCTTGTCGTCGTCGTCGTCGCTTTCTTTTGGCCTCTAAAAAC ACAACAACTTTATCTATCTCTTCCGCAGATAGGATTCCGGGATATAGCTT TAACGATGAGTTCATAGCGTGCTATGGTGACGGTGACGACCAACCTGTTC CTCAACGATTCTTGGTTGTCGCCCGTGCGGTGAAGAAAACTGTTGCTGCT GCTACCTCTGCTCTTTTGCACCACAAACGCGAAATACTACTGTATTACCC AAAAATGACCAATAAAAACACGAATACATTATGCCACACATTGCACTCAT AAAACAGGCGCAGGAGGCGTTCGAAGACCGGATGAACGACCTCGACGCGG AGGTGCGAGACCTGCCCAGGCCGCCCCACCTGGCGGACGTGGAGATGCTC TCGTCGAATGCCAAGACCGCGGCCTTGGACGCGTACCTGGCGGTGAAGCT GGCGGTCGGCGACGACAAGGCGAAAGAGACCGCCGCCGCCCAGGGCTGGG CGGGGCAGGCGGAGGCGGCCACCAGGAGGTGGATGACGGAAGCCCAGCAA GCCGTTCGCGGGGCAGGAAATGGCGGTGGCGGCGGAGGTGATGCTGGCGG TGGTGGTGATGCTGGCGGGAAGGATGCGGGTGCAGGGAACGACGGTGGTG CCGGTGGCGGCGGCGGCGGTGACAGTGGTGACGGAGGTGACGGCGGTGAC GGTGGTGACGGCGGTGACGGCGGTGGCGGCGGTGACGGCGGCGTGGGTGT AGACGAGGCCGTAGCGCTGGCGGAGCGGGTCCTGAGGGAGAGCCACGCGC CCTGCGTCGAGAAGGTGACCCTCAAGACCAACCACGTGGAGAAGTGCCTC GCGAAGTGCCGCAAGATCGCCGACGAGGAGTGGGCGCAGGGGCGGGAGGA GAGCGACAAGCAGGAGCTGCTGGACGAGCGGAAGCCAATGGTGCTGGACA ACGCCATGGACGAGAAGGAGTCGGAGCATGCGGACAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7437:1028..7368+

>mRNA_Ecto-sp13_S_contig7437.18616.1 ID=mRNA_Ecto-sp13_S_contig7437.18616.1|Name=mRNA_Ecto-sp13_S_contig7437.18616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7437:1028..7368+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGATGGAGAAGGACAGGACCAGAGTCCCGCAGCTCACTTGGATGG
CGCGCTTGGAGTCTCGGGGGTCGGGACGGTCAAAGACGCCTTCGACAGGT
TCTTCGTGCGGACGAATGCGGCTCGACTGCCCTATCCGGTGAACGACCTC
GAAAAGCTGCAAGACCTCGACCCCATGCGCTACTCGGACCTAAGCGATGC
TTACCGAGGGGGTGTGAAGACAGCGGTGGACCTCATCGTGCCGGAGTGCG
CTCCGAAGGAGCTCGGCGGGAAGACGATGGACGGCACCGCTCTGGCAACG
TTTTTACGCAAACTGACGCGGGTGATGAACGTCCCCGTGGTCGCTGGCAA
CGATCGTTTCTCGACGCTCTTGGACGTGCTAGAAACGGGAGAGCTGCAAG
CCGCCGAAGCCGCGTACAGGGCTGAATGGGAGCGTGGCGAAAACAACTAC
CAAGGCTTGCCAACCGGAGCGGAGAATTTAATTGCCAAGCATAGCGAGTG
CGTGAAGCGCGCCGAGCTTGTGGCGGACCCTCGGTCCTCCTCCTCTTCCT
CTTCCGGTACCGGGGGGGGGGCGGTGCAGGACGGAGATGAAGCGGGCGCG
AGCGACGGCCGGTCCCTCCGACGGCCGGGATTTGTCCAAGCGTTGCACGC
TGCCTTGAGCGGACTTTACCGGGAATACTGCTTGATCAACGTGCGGCTGT
GGTCGGATGGCGAGATTTTTGGAGCGGACGAGGACTTGAGGGCGCTGCTC
AAGGAGAATCAGGAGGAGCAGCGTTCGGGGCCAGGAGAACAAGGGGATGG
AGATCCGGAGCTTCCGCCACCGCCGCCGGAGTACTCGCACGTGACAGCTG
TGTTCGACAGCCGGAGGCAAAGGTGGAACGGAGATCTTGTCCCGGACATC
ATCAGATCACACCCGGATATGGAAGCGTTGTTGGTCGTCAGGGGTGATGA
TTCGGCCATGCCCGGTACCGGAGAACTGACGGCAGAACACGTCGAAGCCC
TCTGGCACGTTGTGGATAGTTTCTTGGAGCAAAGCCTCGCCACAGCCACG
CAACAGGCGAGTGAGGCGTTCGAAGACCGGATGAACGACCTCGACGCGGA
GGTGCGAGACCTGCCCAGGCCGCCCCACCTGGCGGACGTGGAGATGCTCT
CGTCGAATGCCAAGACCGCGGCCTTGGACGCGTACCTGGCGGTGAAGCTG
GCGGTCGGCGACGACAAGGCGAAAGAGACCGCCGCCGCCCAGGGCTGGGC
GGGGCAGGCGGAGGCGGCCACCAGGAGGTGGATGACGGAAGCCCAGCAAG
CCGTTCGCGGGGCAGGAAATGGCGGTGGCGGCGGAGGTGATGCTGGCGGT
GGTGGTGATGCTGGCGGGAAGGATGCGGGTGCAGGGAACGACGGTGGTGC
CGGTGGCGGCGGCGGCGGTGACAGTGGTGACGGAGGTGACGGCGGTGACG
GTGGTGACGGCGGTGACGGCGGTGGCGGCGGTGACGGCGGCGTGGGTGTA
GACGAGGCCGTAGCGCTGGCGGAGCGGGTCCTGAGGGAGAGCCACGCGCC
CTGCGTCGAGAAGGTGACCCTCAAGACCAACCACGTGGAGAAGTGCCTCG
CGAAGTGCCGCAAGATCGCCGACGAGGAGTGGGCGCAGGGGCGGGAGGAG
AGCGACAAGCAGGAGCTGCTGGACGAGCGGAAGCCAATGGTGCTGGACAA
CGCCATGGACGAGAAGGAGTCGGAGCATGCGGACAGGTGA
back to top