mRNA_Ecto-sp13_S_contig743.18611.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig743.18611.1
Unique NamemRNA_Ecto-sp13_S_contig743.18611.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig743.18611.1 vs. uniprot
Match: A0A6H5KP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP08_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 3.260e-85
Identity = 216/265 (81.51%), Postives = 218/265 (82.26%), Query Frame = 1 
Query:    1 VLFNPRADCMAEAQDGFTPLHFCSQAGCAEGCRLLLGAGAKVDAKLRKTKKTXXXXXXXXXXXXXXXXXXXXXXXXXXETSKGQTPLLLANKAEVKAALAGDPPPAGDSPAAAAGSHGDGEGSKGXXXXXXXXXXXXXXXXXXXXXHLNQDHGGAGALATGGSAREGKSGKEQGGENDGADGTATPPPAATEVSSLGGSQKAEGPSGERGGSVAEAGGVGVGGRVGSLAERRXXXXXXXXXXXXXXXXNGAVNLSHLGVDGDDAV 795
            +L   RADCMAEAQDGFTPLHFCSQAGCAEGCRLLLGAGAKVDAKLRKTKKTXXXXXXXXXXXXXXXXXXXXXXXXXXETSKGQTPLLLANKAEVKAALAGDPPPAGD  AA     G G G+K                       LNQD   AGALATGGSAREGKSGKE GGENDGADGT TP  AA EVSS GGSQKAEGPSG RGGSVAEAGGVG G RVGSLAERRXXXXXXXXXXXXXXXXNGAVNLSHLGVDGDDAV
Sbjct:   58 LLLKHRADCMAEAQDGFTPLHFCSQAGCAEGCRLLLGAGAKVDAKLRKTKKTXXXXXXXXXXXXXXXXXXXXXXXXXXETSKGQTPLLLANKAEVKAALAGDPPPAGD--AAXXXXXGYGPGTK-------------TVAEAAAAGGLNQDQ--AGALATGGSAREGKSGKEHGGENDGADGTTTPT-AAAEVSSFGGSQKAEGPSGGRGGSVAEAGGVG-GDRVGSLAERRXXXXXXXXXXXXXXXXNGAVNLSHLGVDGDDAV 303
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BLAST of mRNA_Ecto-sp13_S_contig743.18611.1 vs. uniprot
Match: D8LFR3_ECTSI (Ion channel nompc, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR3_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 5.190e-75
Identity = 220/261 (84.29%), Postives = 221/261 (84.67%), Query Frame = 1 
Query:   28 MAEAQDGFTPLHFCSQAGCAEGCRLLLGAGAKVDAKLRKTKKTXXXXXXXXXXXXXXXXXXXXXXXXXXETSKGQTPLLLANKAEVKAALAGDPPPAGDSPAAAAGSHGDGEGSKGXXXXXXXXXXXXXXXXXXXXXH-----LNQDHGGAGALATGGSAREGKSGKEQGGENDGADGTATPPPAATEVSSLGGSQKAEGPSGERGGSVAEAGGVGVGGRVGSLAERRXXXXXXXXXXXXXXXXNGAVNLSHLGVDGDDAV 795
            MAEAQDGFTPLHFCSQAGCA GCRLLLGAGAKVDAKLRKTKKTXXXXXXXXXXXXXXXXXXXXXXXXXXETSKGQTPLLLANKAEVKAAL GDPP                     XXXXXXXXXXXXXXXXXXXXX      LNQD GGAGAL TGGSAREGKSGKEQGGE+DGADGTATP  AA EVSSLGGSQKAEG SGER GSVAEAGGVG GGRVGSLA   XXXXXXXXXXXXXXXXNGAVNLSHLGVDGDDAV
Sbjct:    1 MAEAQDGFTPLHFCSQAGCAAGCRLLLGAGAKVDAKLRKTKKTXXXXXXXXXXXXXXXXXXXXXXXXXXETSKGQTPLLLANKAEVKAALVGDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLNQDQGGAGALVTGGSAREGKSGKEQGGESDGADGTATPTAAAAEVSSLGGSQKAEGSSGEREGSVAEAGGVGGGGRVGSLAXXXXXXXXXXXXXXXXXXXNGAVNLSHLGVDGDDAV 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig743.18611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP08_9PHAE3.260e-8581.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFR3_ECTSI5.190e-7584.29Ion channel nompc, putative n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig743contigEcto-sp13_S_contig743:17719..21510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score244.6
Seed ortholog evalue5.1e-62
Seed eggNOG ortholog2880.D8LFR3
Model size798
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionion channel nompc, putative
Ec32 orthologEc-01_001220.1
Cds size771
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464011.6799178-CDS-Ecto-sp13_S_contig743:17718..183241681464011.6799178-CDS-Ecto-sp13_S_contig743:17718..18324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig743 17719..18324 -
1681464011.6987128-CDS-Ecto-sp13_S_contig743:19332..193711681464011.6987128-CDS-Ecto-sp13_S_contig743:19332..19371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig743 19333..19371 -
1681464011.7114575-CDS-Ecto-sp13_S_contig743:21357..214831681464011.7114575-CDS-Ecto-sp13_S_contig743:21357..21483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig743 21358..21483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464011.7206593-UTR-Ecto-sp13_S_contig743:21483..215101681464011.7206593-UTR-Ecto-sp13_S_contig743:21483..21510Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig743 21484..21510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig743.18611.1prot_Ecto-sp13_S_contig743.18611.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig743 17719..21483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig743.18611.1

>prot_Ecto-sp13_S_contig743.18611.1 ID=prot_Ecto-sp13_S_contig743.18611.1|Name=mRNA_Ecto-sp13_S_contig743.18611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
MAEAQDGFTPLHFCSQAGCAEGCRLLLGAGAKVDAKLRKTKKTPLHFAAG
KGHVEAVRVLMQAGADVAAETSKGQTPLLLANKAEVKAALAGDPPPAGDS
PAAAAGSHGDGEGSKGAGAAGDGPGTKTVAAGGGGGGHLNQDHGGAGALA
TGGSAREGKSGKEQGGENDGADGTATPPPAATEVSSLGGSQKAEGPSGER
GGSVAEAGGVGVGGRVGSLAERRRKKRKLAKAAAAAAGGNGAVNLSHLGV
DGDDAV*
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mRNA from alignment at Ecto-sp13_S_contig743:17719..21510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig743.18611.1 ID=mRNA_Ecto-sp13_S_contig743.18611.1|Name=mRNA_Ecto-sp13_S_contig743.18611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig743:17719..21510- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTGTTTAACCCAAGGGCCGATTGCATGGCGGAGGCGCAGGATGGTTT
CACGCCGCTGCACTTTTGCTCTCAGGCGGGGTGCGCGGAGGGATGCCGGC
TGCTGCTGGGGGCGGGGGCTAAGGTGGACGCGAAGCTACGCAAAACGAAG
AAGGTGCGTTTACCGTTTGTCTGCCGTGCGTCGGTTTCAGCACGCCGAGG
TCCGACTCTGAACAACGCAACGCGTCCTGTCCTTCACAGGGCCAGAACAC
ACCCACACATACGAATACCAAGTGTGTTTGAGAAGATGGCTGTGCAGAGG
TTTTTGAGGACTTTCGTTTTCCTTTTTATTTTGCCAACGGGGGGTCGATC
ATATCTAATTGTCAATCAACTATGTATGACTCGGTTTTTCGTGTTACGGT
TATTTATGTAGAAGGCCCTTGGTACAGTGCGGTACAATAGCCTCTCGTTG
GTGGTAGAGGTACGTGTCAACGGCCGGCAGGCGCACTAAGAATGAAATCA
AAACGAAGGGAGTCAGAGTCAGGTGTCGAGTTGCGACGGCAAGCAGCAGC
CTGTCGCTGTTGCAGCTGCTAGCCGTCACCGAAGCAAAATAAAACAGCGG
AGGTCGTATGGGGTGTTGGGTGGGCGGCAGGACAGCCCGCACTAAGGACG
ACGAGGTGGGGTCCCGAGGGTTACCTGCAGCGCCTTGCGGCCTCCAGGAA
AGCTGGTGTTTGAAACCACAGGCTCTTGACTTTTCGCCACACACATACGC
GCTTTGTGGAAAAGGTTTTTTGTTTTTTCACCATAAACCTGACTTCTTCC
GCCACACACGGTTTTGGAGAACGTTTTTTTTTTATTTTCGCCGCTTTGTG
CCTGCTCCACGACAAGGCACGATGCCGACACCGACTCGGCACATCGTAGA
GTTTGCGTTGTTTATTTTAAAGAATGTCATGGAAAGAAGTAGCGGAAGAC
CAAGACAGCAAACTGTGGGCGGAATTTCTTCCACAACAAGGGTGCCAACG
TGTCAACGCCATCGCACTGACGTTTCTCTGTACAAAGAACGTAGAGTTGT
TCGCTGTGGATGTTTGGTTGGTTATTATGGAAAGCCGAGTCCGGACTATT
CGGCTCGGGCGAAGGAGGGGGTAGGCGTGTACTCATGTTAAGGCATGCCG
TAGTCGTTTGAACATTTGACTTCGTATCCCTACAACGATGCCGGGACGGA
GTGAAATGCCTGGTTCTTGCCTTCCAAGGCTACGTTTCACAGCAGGATGA
ACCAGACGCTGGTCGTCATGGTTGCGTTTGGGGGCAGGGAGGATCATTCC
CTTCGAAGTACGCCATGACTCTATTTAGCCCTACCTGAAGTACGCCATGG
CCCTACATCCCCAACTCTGATTGGCCGCGGACTTGGACACCCCGTCCCTC
CCTCCGCGCCCGCAGGTTTACAGATAAAGAGCGGGTTGAGAGCTCATGCA
CGGGTGTGTAGGCTGTGCCTGCACACCCTCCAAGCCCTGCCTGTGCTGTC
CATTTTTATGAAACAAAATCTTGTTTGTGCATGTACCATGAACTCGAAGG
TAACACATTCTTCCCGGAGCTTGGTAACACATTCTTCCGAGAGCTTGGCA
GTGAGAATAATACCACTCTTTTGTTCGGAAACATAAGGGTCGTTGGAAAC
ATAAGGGCCGTTGAAGGACCTCTCTGGGGTCCGTTCTAAGTTGATCTCTA
GAAGGTGACCCCTTTTGGGGGGATAGTTGGCTTGTGACCACGGAAGGCGT
CCGCGTCGGTTGAGCTAGTACGGGCATTGGAGCGCACTGAGTGGAGACCG
GAACGGTTTTTCATGTCAAGACGACAACAACAACAAAAACAATTCGAATG
CTATAATAGTGTGATTGTCCTATTGGTTGCTATATTTCAAAACAGATTGG
TATTGTATATGCGAGATTCTCTCTTTCGAGCTGTGCGGGTTTTTGGTTTT
GCCTGCTCGGTTTTCCGACGATGGTGGCAGATGCTCAGATGCTGAGCTAG
GTCCCATGGTCCCTGCCTCTGACGTTTGCCTCGTGTTTGCCGCCGCGTTG
TGCCGCTACCGTTGCTGTTGTTGTCGCGGTTGCATGGGTCACCTGTCCGT
CGGCTGTCCGTGGCACGTTGTTGCTTCCTGGTTCGATAGACACCTCTCCA
TTTCGCTGCTGGAAAGGGCCATGTCGAGGTGAGATGTTGTTGTTGGTGGC
AGTGGTGGTGGTGGTGTTACTTTTGTTTGTGTCATTGGTGCTACTTTTGT
TTGTGTTGATGGTGTTGGTGTTGGTGTTTTGTTTTGTTTTGTTTTGTTGT
CGTTGATTATGTTGCTGTTGTGTTGTTTTGGTGTGTTGCTGTTGTTGTTG
CTGTTTGCTGATGCTGGTGGCTGTACCGACACTCTCGGCGGGATGTATCA
GTGGTACTCGCCCTCTCTGTTGTTGATGAGAGGTCGGATCTCGAAATGGG
GGAGGGTTTGTGGGCACACCTTTTCAGTCAAGAAGCGCCCCACGTGCTGC
TTCGTAGACAGTATTGGGGTTCATTGTTTTTTTCGAAGAAAGACATACAT
TTTACAGGAAAACTTGCCGTTCAAGGTATAATCCCGGTCGAAAGGCATAT
GTCGAAGTCTTGTCAGTGAGTTGAGGGAATCCGGCTCGAAACTGGTGGTC
CTTGTTCTTACACAAAGACCCCAGGACACGTCATAGAAGTCGAATCTTGT
TTGGTCCGGTTGTCTCAATGAGGGCGGCATGTTGTGTGGTACTTGGATCG
CTGCTGCGTGGGAGTATGTAGCAAAGCCATACAGAAGAGCATCAAAAGAT
GGCGGGCTCGAGCACCTTGCTGTTCAAGCCACCATCCCTCATTTTGGATA
ATGACACACGTGTACTTGTGGGCGTCGGCTAATCGGGTCTCCCGTTGCAC
ACCTCCGTACTCAACCAACGTCTGTTGAAAGCAGGTCTGTCTTGGCACCT
ACACGCAACTTTCTTGTCCGAGCCATTATCCTGTTTCTTCCATTCGTACC
AGCCAATCAGTCGTCTTGTGTCTTGTACCTGTAGCCCTTACCTGGCCAAC
GCTCACATGGCCCTTGCCTCACCACCGCCGACACAGCAGTGCACCGCAAC
ACGTATGACGTAGCTCTAACCCCACCTGGCCCGCCCTCCACCGCTACACG
GTGTCTCCTTCCGTACGGCCTCTCGACGACAACCAGGCCGTGCGCGTCCT
GATGCAAGCAGGGGCCGACGTTGCGGCCGAGACTTCCAAAGGCCAGACGC
CGCTGCTGCTGGCGAACAAGGCCGAAGTCAAGGCTGCTCTCGCCGGAGAC
CCACCACCGGCCGGCGATTCACCAGCGGCGGCGGCGGGGTCTCATGGTGA
TGGCGAAGGCAGTAAGGGGGCGGGGGCGGCGGGAGATGGACCGGGGACGA
AAACAGTAGCGGCCGGCGGCGGCGGCGGCGGCCACTTGAATCAGGACCAC
GGGGGGGCTGGAGCGTTAGCCACCGGGGGTAGCGCTAGAGAAGGGAAAAG
TGGCAAGGAGCAGGGGGGAGAAAACGATGGGGCGGACGGTACGGCTACTC
CTCCTCCCGCAGCTACCGAGGTTTCGAGCTTAGGGGGATCACAGAAGGCG
GAGGGGCCGAGCGGGGAAAGGGGGGGGTCTGTGGCGGAAGCAGGCGGGGT
AGGGGTAGGGGGCCGGGTGGGGAGCCTCGCGGAGCGGCGCCGAAAGAAAC
GAAAGCTAGCGAAGGCGGCAGCAGCGGCGGCGGGCGGGAACGGGGCCGTA
AACCTTTCGCATTTGGGTGTGGACGGGGACGATGCTGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig743:17719..21510-

>mRNA_Ecto-sp13_S_contig743.18611.1 ID=mRNA_Ecto-sp13_S_contig743.18611.1|Name=mRNA_Ecto-sp13_S_contig743.18611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig743:17719..21510- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGGCGCAGGATGGTTTCACGCCGCTGCACTTTTGCTCTCAGGC
GGGGTGCGCGGAGGGATGCCGGCTGCTGCTGGGGGCGGGGGCTAAGGTGG
ACGCGAAGCTACGCAAAACGAAGAAGACACCTCTCCATTTCGCTGCTGGA
AAGGGCCATGTCGAGGCCGTGCGCGTCCTGATGCAAGCAGGGGCCGACGT
TGCGGCCGAGACTTCCAAAGGCCAGACGCCGCTGCTGCTGGCGAACAAGG
CCGAAGTCAAGGCTGCTCTCGCCGGAGACCCACCACCGGCCGGCGATTCA
CCAGCGGCGGCGGCGGGGTCTCATGGTGATGGCGAAGGCAGTAAGGGGGC
GGGGGCGGCGGGAGATGGACCGGGGACGAAAACAGTAGCGGCCGGCGGCG
GCGGCGGCGGCCACTTGAATCAGGACCACGGGGGGGCTGGAGCGTTAGCC
ACCGGGGGTAGCGCTAGAGAAGGGAAAAGTGGCAAGGAGCAGGGGGGAGA
AAACGATGGGGCGGACGGTACGGCTACTCCTCCTCCCGCAGCTACCGAGG
TTTCGAGCTTAGGGGGATCACAGAAGGCGGAGGGGCCGAGCGGGGAAAGG
GGGGGGTCTGTGGCGGAAGCAGGCGGGGTAGGGGTAGGGGGCCGGGTGGG
GAGCCTCGCGGAGCGGCGCCGAAAGAAACGAAAGCTAGCGAAGGCGGCAG
CAGCGGCGGCGGGCGGGAACGGGGCCGTAAACCTTTCGCATTTGGGTGTG
GACGGGGACGATGCTGTGTGA
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