mRNA_Ecto-sp13_S_contig10157.186.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10157.186.1
Unique NamemRNA_Ecto-sp13_S_contig10157.186.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10157.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10157contigEcto-sp13_S_contig10157:3862..4284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.562457-UTR-Ecto-sp13_S_contig10157:3861..39051681462511.562457-UTR-Ecto-sp13_S_contig10157:3861..3905Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10157 3862..3905 +
1681462511.5896595-UTR-Ecto-sp13_S_contig10157:4205..42841681462511.5896595-UTR-Ecto-sp13_S_contig10157:4205..4284Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10157 4206..4284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.578586-CDS-Ecto-sp13_S_contig10157:3905..42051681462511.578586-CDS-Ecto-sp13_S_contig10157:3905..4205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10157 3906..4205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10157.186.1prot_Ecto-sp13_S_contig10157.186.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10157 3906..4205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10157.186.1

>prot_Ecto-sp13_S_contig10157.186.1 ID=prot_Ecto-sp13_S_contig10157.186.1|Name=mRNA_Ecto-sp13_S_contig10157.186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MKGGKTPVGWQQIVPGGACQPANTEARFSLFPYTARVRGKKETNNKNGIS
TRCTNALSSFAAYFLPLLKDGLPGPTVDKPTVSKEGILSVKGQNSYFTR*
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mRNA from alignment at Ecto-sp13_S_contig10157:3862..4284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10157.186.1 ID=mRNA_Ecto-sp13_S_contig10157.186.1|Name=mRNA_Ecto-sp13_S_contig10157.186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10157:3862..4284+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCCGGGCGGGGGGGGCGTAGCGTACGGGTCACTTAACAACAAATGAAG
GGGGGTAAAACGCCTGTAGGATGGCAACAGATAGTTCCGGGGGGAGCGTG
TCAACCGGCCAACACTGAAGCCCGATTCTCACTTTTTCCGTACACAGCCC
GCGTTAGAGGGAAGAAGGAGACCAACAACAAGAACGGCATCAGCACCAGG
TGTACCAATGCACTATCTTCTTTCGCAGCTTATTTTCTACCGCTGCTCAA
AGACGGCCTGCCTGGCCCAACGGTGGACAAGCCTACGGTCAGTAAAGAAG
GTATACTTTCTGTGAAAGGACAAAACTCATACTTCACACGCTAGACACCG
CGACAAGTTTCAAGATGACAGAAAAAGAAAGCAGGAATACCAACACGTGC
GTACGTCGCCTTTCCGCTGGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10157:3862..4284+

>mRNA_Ecto-sp13_S_contig10157.186.1 ID=mRNA_Ecto-sp13_S_contig10157.186.1|Name=mRNA_Ecto-sp13_S_contig10157.186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10157:3862..4284+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGGGGGTAAAACGCCTGTAGGATGGCAACAGATAGTTCCGGGGGG
AGCGTGTCAACCGGCCAACACTGAAGCCCGATTCTCACTTTTTCCGTACA
CAGCCCGCGTTAGAGGGAAGAAGGAGACCAACAACAAGAACGGCATCAGC
ACCAGGTGTACCAATGCACTATCTTCTTTCGCAGCTTATTTTCTACCGCT
GCTCAAAGACGGCCTGCCTGGCCCAACGGTGGACAAGCCTACGGTCAGTA
AAGAAGGTATACTTTCTGTGAAAGGACAAAACTCATACTTCACACGCTAG
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