prot_Ecto-sp13_S_contig7417.18598.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7417.18598.1
Unique Nameprot_Ecto-sp13_S_contig7417.18598.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length320
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7417.18598.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI)

HSP 1 Score: 603 bits (1555), Expect = 1.650e-207
Identity = 305/319 (95.61%), Postives = 313/319 (98.12%), Query Frame = 0 
Query:    1 YGEPLHVLLYVFAAAGALGLVSILVGVLSNLKEASPIEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLAVLVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAILLNLAALFCFWWFSVKRLLEDPRRAPRMLYVFIRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTAARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARVSDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 319
            YGEPL+VLLYVFAAAGALGLVSILVGVLSNLKEASP+EMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLA++VSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASA+LLNLAALFCFWWFSVKRL EDPRRAPRMLYV + TTLCCGVCAPLRLLGWWVAAVSCVLKGDK GQRARTA RKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDI AAMDDPLQRGGPFRNV+SCFADEGPSTVAQMKALAKRNHENEAR+SDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL
Sbjct:  684 YGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQRGGPFRNVSSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 1002
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7417.18598.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 595 bits (1535), Expect = 3.100e-197
Identity = 303/319 (94.98%), Postives = 312/319 (97.81%), Query Frame = 0 
Query:    1 YGEPLHVLLYVFAAAGALGLVSILVGVLSNLKEASPIEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLAVLVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAILLNLAALFCFWWFSVKRLLEDPRRAPRMLYVFIRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTAARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARVSDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 319
            YGEPL+VLLYVFAAAGAL LVSI VGVLSN+KEASP+EMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLA++VSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLA+ASA+LLNLAALF FWWFSVKRL EDPRRAPRMLYV +RTTL CGVCAPLRLLGWWVAAVSCVLKGDKAGQRART ARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEAR+SDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL
Sbjct: 1390 YGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 1708
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7417.18598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN03_ECTSI1.650e-20795.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4C8_9PHAE3.100e-19794.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..178
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 133..151
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..319
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 112..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7417contigEcto-sp13_S_contig7417:142..5352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7417.18598.1mRNA_Ecto-sp13_S_contig7417.18598.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7417 142..5352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7417.18598.1 ID=prot_Ecto-sp13_S_contig7417.18598.1|Name=mRNA_Ecto-sp13_S_contig7417.18598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
YGEPLHVLLYVFAAAGALGLVSILVGVLSNLKEASPIEMEKNFQLARARL
IVRAAEASRRNVLPPPFNLAQGGLAVLVSATQCHRHVSERRQAVSGACSV
HGRFVFWLVLGPLALASAILLNLAALFCFWWFSVKRLLEDPRRAPRMLYV
FIRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTAARKAVLKGRE
GGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNV
TSCFADEGPSTVAQMKALAKRNHENEARVSDRLKGLEVAVLGTLARMDAV
SEETAKVQQEYLASQSVRL*
back to top