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Homology
BLAST of mRNA_Ecto-sp13_S_contig7417.18598.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI) HSP 1 Score: 603 bits (1555), Expect = 1.650e-207 Identity = 305/319 (95.61%), Postives = 313/319 (98.12%), Query Frame = 1
Query: 1 YGEPLHVLLYVFAAAGALGLVSILVGVLSNLKEASPIEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLAVLVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAILLNLAALFCFWWFSVKRLLEDPRRAPRMLYVFIRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTAARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARVSDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 957
YGEPL+VLLYVFAAAGALGLVSILVGVLSNLKEASP+EMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLA++VSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASA+LLNLAALFCFWWFSVKRL EDPRRAPRMLYV + TTLCCGVCAPLRLLGWWVAAVSCVLKGDK GQRARTA RKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDI AAMDDPLQRGGPFRNV+SCFADEGPSTVAQMKALAKRNHENEAR+SDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL
Sbjct: 684 YGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQRGGPFRNVSSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 1002
BLAST of mRNA_Ecto-sp13_S_contig7417.18598.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE) HSP 1 Score: 595 bits (1535), Expect = 3.100e-197 Identity = 303/319 (94.98%), Postives = 312/319 (97.81%), Query Frame = 1
Query: 1 YGEPLHVLLYVFAAAGALGLVSILVGVLSNLKEASPIEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLAVLVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAILLNLAALFCFWWFSVKRLLEDPRRAPRMLYVFIRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTAARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARVSDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 957
YGEPL+VLLYVFAAAGAL LVSI VGVLSN+KEASP+EMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLA++VSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLA+ASA+LLNLAALF FWWFSVKRL EDPRRAPRMLYV +RTTL CGVCAPLRLLGWWVAAVSCVLKGDKAGQRART ARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEAR+SDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL
Sbjct: 1390 YGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQSVRL 1708
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 960 |
| Hectar predicted targeting category | signal anchor |
| Exons | 7 |
| Cds size | 960 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464010.7151-CDS-Ecto-sp13_S_contig7417:141..287 | 1681464010.7151-CDS-Ecto-sp13_S_contig7417:141..287 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 142..287 + |
| 1681464010.7260797-CDS-Ecto-sp13_S_contig7417:1018..1148 | 1681464010.7260797-CDS-Ecto-sp13_S_contig7417:1018..1148 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 1019..1148 + |
| 1681464010.737906-CDS-Ecto-sp13_S_contig7417:1792..1914 | 1681464010.737906-CDS-Ecto-sp13_S_contig7417:1792..1914 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 1793..1914 + |
| 1681464010.7480137-CDS-Ecto-sp13_S_contig7417:2651..2836 | 1681464010.7480137-CDS-Ecto-sp13_S_contig7417:2651..2836 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 2652..2836 + |
| 1681464010.7643251-CDS-Ecto-sp13_S_contig7417:3343..3507 | 1681464010.7643251-CDS-Ecto-sp13_S_contig7417:3343..3507 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 3344..3507 + |
| 1681464010.7760105-CDS-Ecto-sp13_S_contig7417:4628..4691 | 1681464010.7760105-CDS-Ecto-sp13_S_contig7417:4628..4691 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 4629..4691 + |
| 1681464010.7855082-CDS-Ecto-sp13_S_contig7417:5202..5352 | 1681464010.7855082-CDS-Ecto-sp13_S_contig7417:5202..5352 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7417 5203..5352 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7417.18598.1 >prot_Ecto-sp13_S_contig7417.18598.1 ID=prot_Ecto-sp13_S_contig7417.18598.1|Name=mRNA_Ecto-sp13_S_contig7417.18598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
YGEPLHVLLYVFAAAGALGLVSILVGVLSNLKEASPIEMEKNFQLARARL IVRAAEASRRNVLPPPFNLAQGGLAVLVSATQCHRHVSERRQAVSGACSV HGRFVFWLVLGPLALASAILLNLAALFCFWWFSVKRLLEDPRRAPRMLYV FIRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTAARKAVLKGRE GGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNV TSCFADEGPSTVAQMKALAKRNHENEARVSDRLKGLEVAVLGTLARMDAV SEETAKVQQEYLASQSVRL* back to topmRNA from alignment at Ecto-sp13_S_contig7417:142..5352+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig7417.18598.1 ID=mRNA_Ecto-sp13_S_contig7417.18598.1|Name=mRNA_Ecto-sp13_S_contig7417.18598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7417:142..5352+ (Ectocarpus species13 EcNAP12_S_4_19m) TACGGGGAGCCCCTACACGTGCTCCTCTACGTCTTTGCTGCGGCCGGGGC
GCTGGGGTTGGTGAGCATATTAGTCGGGGTTCTGTCGAACTTAAAGGAGG
CCAGTCCCATCGAGATGGAGAAGAACTTTCAGCTCGCAAGAGCAAGGTGA
GGCTCGGAGATGTGCATGAGCCTCTTCCTGTACAGCCCTCAGAACCTTTA
TTGAACGGATGTCGTCCACTCGTTTTTGAGATCGCCAGGAACAATCAGCT
CCCCAGCAAATGCCAAGAGTGCTCTGCACGAGCGACCAAAGCACGCGCGT
ACAAACGGTTGAATTGAACACACGGTGTATATGGCATGGCGTGTTTGCAT
GCTTGATTGCTACAGCACAACGGGAAATATTTGACCTTCCGTGTAGAGAA
TAATCATGGAGCGGTTCCGTAAGAGAGTTGCAGACAAACTGTCGGGTCCC
GTGTGAGGACCGGGTATGCTTGTAGCCACAGTTTGTTCTTCGTGCCCTAC
AATTTTTGGAGTACCACTGATACGAGATTATTTCACCAGCACACGTGCGG
AAGGTGGACGGGGTTGGCTTGGCACACGTGCGGTACTTGTAGGCCTCAGG
GCGGTTGCACCCGGAACGGCGTGTCCTCTCTCCTCTCCTCCTACGGTGCG
GGTGGGTGCCGCACTCTTGTGTCGTGCAGGGGGATGCTGTACTGCTTAAG
TAGTAGTTCTCTCGCTTGAAACCCTACACCCGTGTTCATTTCTGTCCGAA
CGCCGAATACGACACTGACACTCTGTGCAAGATGTCGGCACCTCCCCGCT
CACACACATCGACGTATCGTTGTTGCCATGTCGTTCGGACCATAACTGAT
TCTAATGTCAATCGCCGCCGCGGTCAGGTTGATAGTGCGAGCGGCGGAGG
CTTCCAGGCGCAACGTTTTGCCGCCGCCCTTCAACTTGGCGCAGGGGGGC
TTGGCGGTGTTGGTATCGGCAACTCAATGCCACCGACATGTGTCAGAGAG
ACGGCAGGTACAGCAGTATGCACGTCATACGCCATGGTTGTGTGTACTGG
ATACTGGGCTGTTGTGTGTTGTCGTGCTGTTGAAGCCGGTGGCGGCAGTG
CACGGGGGGAGGGGGGGTGTACTCGTAGCCGTGCATACCGTAGTCGCTAG
ATCATTGACCTCCCATTCCTACAAAAACTAGAACGGAGCACGCCGGGTTC
TCACCGGATAGACTCTCACATCAATCATCCAAGCGCGCCATGAGGTATTC
GGCGGGTCACTTGAAGGGTGTGCTGCATCCTGATAAGGGTGTCTGCATGC
GCTTAATTCGTTGCATACGGATGGAAGATGCGAACGACTTGATTTAGTTT
CTGGTGGTTTGTGTTCCAGAGACAATTGTAGGCAATTTATAACTGCCTCC
ACGGTGCTTGACCAATTTAATAAAACGTGGTGTGATCATGCCCTTTGCGT
GGAGTGAAGGTTCTCAACCCCGCACAACATGATCTACTCGACCACCATTA
TGGTTACCGCAATAAAAAACCAAAAAGCTTCTTGGGGTACTTTTCGTCGC
GAACATACGATCGGTTTCGTTTCACGGCTCTCTCTACATTTCTCTGTCCG
TGCGCGCGTGCGCTGCTTACCTGCTCCCCCCCCCCCCCCCCCCCCCTTCA
GGCCGTGTCGGGTGCGTGTTCGGTGCATGGACGGTTCGTTTTCTGGCTAG
TCCTGGGACCCTTGGCCTTAGCTTCGGCGATACTGCTGAACTTAGCCGCG
CTCTTCTGTTTTTGGTGGTTCAGGTGAGAAGCAGCAATAGTCGGGTTTCT
AGTGGCAGTTCTGGCCGTTTACCCTTGGTTCCTTCCCCTCCATCGCCCAT
GGCATGCAACCACCCCCCCAGGAAGAGGGTATAAGAGAACAATCGTTTGG
AGTTGTGGTAATTTTTGTTTCCGGATATGCACGGTCGGTAGGTAGGATGG
TAGACTAGACGAGGTGACCAGCATCGCCGATTGACTTCTGGTTTGCGAGG
CACAAGAGACGGAGCAAAAAAAAAGTGACCATGTGTCTTCTTCGTGTGTA
TTTGGCACAAGGCTTAGCGTCTCCTTCGAATCACATATCACATGTCAAAT
TTCCGTGCCCAGTGTTCCATTGTTGCCAGGCAGGACGAGAATCACGAATC
ACACGTCAATCTTTGCCAAGTGTTCCTCCCATTGGTGCTACGCATGGGCA
GGGCGAGCAAGTGTTCTCGCTCACCCACAGCATCACGTTTGGCCTGAGGT
ACTCCCGCTGCTGTCGGATACTTGCGCGCGCCACACGAATGCTGCTGTCT
TGTATCGCGAGCAGGCTTCAATCGGTGTAACAATGTGAAGGTGTTGTTGT
TTCCTTGGCTTGGTGCTCGTGCTTCTCTCTCCCACGCACCTTCACTCCCC
CCCACCGATGGGTTCTCTGCCCCCTGCCTCTCCTTCAATCGCTCGCTCTC
TCACTCTCCACCCATCCGCTTTCTCTCGCTACCCCCTTGCTGCCCTACCA
TCGCACACAGCGTGAAACGCCTGTTGGAAGATCCTCGGCGGGCCCCGAGG
ATGCTGTACGTCTTCATACGCACCACGCTTTGTTGCGGAGTGTGTGCCCC
CCTGAGGTTGCTGGGGTGGTGGGTTGCGGCTGTGTCGTGCGTGCTGAAAG
GAGACAAGGCGGGACAGAGAGCGCGGACGGCTGCGAGAAAGGCTGGTGAG
TGAGATTGAGCTTTTTTTTTTTCCTCATCACGAGATGGTAATGATGTTGA
TAACTCACTTCGTGGATGACACCAAATTGCTGAGACGGCAATGGATTCAT
TGCGTGCATGACCTACCGAAAGTGTTGTAACGCTACTCGCCCTAGTTGCA
GTCAAACATACCTCCAGTATTCTTCCCTGGTTAGCAATCATTTCACGTGT
TAGTACCTGGATGGGGAAGGATGTCTACCTCTACGTACCGCCAAGGATCC
AACACGAGCAACTCTGTGGGTTCCTAGTGACGCACAGACATCACTCACCA
TCTCCTTTTACCACGGATCGGGTCGCTCCCGTCGCAAACATTCGGCAGTT
ACATCCTATTCCCTCCGTTTCCCTTGTTAAAAAATAATAATTGTTGATGA
CACCGAAAGAAAATACCACTTCCCACCTACAGTTTCGACCTCCACTTGAT
TCGGCCGCCATCGCTCCCTTTGATGAATCGACCCGGGTGACTTACACGGC
AGTCCTGAAGGGGAGAGAGGGCGGGGACTACCACCTGTCGCATCTCTTGA
GGCGAACGAGGTGGGGGGCGGGCGGAGGAAGCAGCAGCCTCGCGCAGGGC
TTTTCGGTGCGCGACATCGTGGCGGCGATGGACGATCCGCTGCAGAGGGG
CGGTCCCTTTAGAAACGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAAGAAAGAGAGTGGTTTGCGTCCCTGTGTTTCGG
CGTTTGGGCCCTCCTGTGCTCCCTTGCGTTGTTCTAGAACCACCCTCTGT
CCCGAGAAGAGGTTTGGTTATGTTATTTGCTATGCTTAAGTCAGTCTACG
ATAAGATGTTCTTGTTGCGTTGTTCGGCTTTTTTCTCGTCTCAACTCGAG
AGTTCCGATCCCCGGGGGTTACGCAGAATATAAGTCTCCGTTTGAGTTCA
TGAAGACGTGCGTGGTGTTGCAATCAACAGTTGCAGAAATTGGTATGTCA
GGTATCAGTCAGAGCTTCGTGGCGAAAGGAGAGCACTTTTAGTCGTTCGA
TTACGCTTTAGGTATATATCCAGATCACGGTGAGCTGCCTGTCACGTTGA
ACTTTCGTTTCGTCCACGCCACGCTTCCCTCCGGTAAATCCCTGTGCCCG
AGATTTTTTTTTGTCTGCGCCCATTTCCACCTGCGGTTCTTGACGTGCAA
TTGTCTAAAGACAACCACCGCAACCGGTATTTAGCGGCACCCCTCTTCCA
CGATAGACTTATCGCTCACCTTGCGACTACCCCTTTCGCCGTCCCTGCCC
GAGGTCACAAGATAGAATCCCGTGACCCGCTGTCTTTTAGCATTTTGTCG
GGCGTGAAATTTTTTTCTTCTCCGGAACAACATCCGCACATGGCCATGTT
TTCATGGCAATAGTCTATGGTGTCATTGTCGTTGACCTCTATGGGGAGAA
GACGATCGGTGTCGTGTGAAACGCGCGACCACACGAGCGACAGATGGCGT
GGTTCCACACGCGATGCAGCGCCCTTACTCTTGCAGAATCCTGAAAGAGA
GTATTTCTAATGTACAAGAATAACTTGTGACTGACACTCCGAGATGCCTC
GAACCGGGCGCGACTACCCAACATGTTATTCGTTCCTCTCCCGGTGTCAC
CGATCCCGGAGTATATTGCCCCGCCATCCCGCCACCCCTCCGCATCGAGG
GAGAAGATCCCCCTCTACACTGCGGTACCAGCAGCGACCTTGTTGTCTGA
ATCGCGAACCACTTGCACATCTCCACGCGCCTTCCAGGTAACGTCGTGCT
TCGCGGACGAAGGCCCGAGCACGGTGGCGCAGATGAAGGCGTTAGCCAAG
GTAAGCAGAAGATTCTCTGCTTGGTTCCCGGCTAGTCGGAAGCGTTTCTT
GAGACCACGTTTTAAGGCACACGCACTTTTTGGCCGTGATTATTTTCCTT
GGCACAGCAGCATACGTAACAAGCCTGCAGGAAGGAACGATTGGCCATCG
GTGATCGGTTTCTGTGGGAAGAACAACTCCCCGTCGTCTCGAGTAGGGTG
ATGTAACAGCAGTGGCATGAACACTGTGGATCATTGCTAGTTCATCCTAG
ACCCTTGTGTGTGGAAAGAGATGGATTCATCGTGTTTTTCTAACGAAATA
AAAAAACATAAACGCGCCCCCCCCCCCTCTCGCCCCCCCCACTTTTTTGC
ACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCCGTGATCGGTCCTGT
GGTAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGACAAACCGC
TAAGGCATGCAAAACATAAGGGTACCCCTTCCCCCCTCCCTTCGTTTCAC
GCCTTTTCCAGCGCAACCACGAGAACGAGGCACGCGTTTCGGACAGGCTT
AAGGGGCTCGAGGTGGCCGTGCTTGGTACTCTCGCTCGTATGGACGCCGT
TTCAGAGGAGACCGCCAAAGTGCAGCAGGAGTATCTCGCATCGCAGTCCG
TCCGGTTATAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig7417:142..5352+ >mRNA_Ecto-sp13_S_contig7417.18598.1 ID=mRNA_Ecto-sp13_S_contig7417.18598.1|Name=mRNA_Ecto-sp13_S_contig7417.18598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7417:142..5352+ (Ectocarpus species13 EcNAP12_S_4_19m) TACGGGGAGCCCCTACACGTGCTCCTCTACGTCTTTGCTGCGGCCGGGGC GCTGGGGTTGGTGAGCATATTAGTCGGGGTTCTGTCGAACTTAAAGGAGG CCAGTCCCATCGAGATGGAGAAGAACTTTCAGCTCGCAAGAGCAAGGTTG ATAGTGCGAGCGGCGGAGGCTTCCAGGCGCAACGTTTTGCCGCCGCCCTT CAACTTGGCGCAGGGGGGCTTGGCGGTGTTGGTATCGGCAACTCAATGCC ACCGACATGTGTCAGAGAGACGGCAGGCCGTGTCGGGTGCGTGTTCGGTG CATGGACGGTTCGTTTTCTGGCTAGTCCTGGGACCCTTGGCCTTAGCTTC GGCGATACTGCTGAACTTAGCCGCGCTCTTCTGTTTTTGGTGGTTCAGCG TGAAACGCCTGTTGGAAGATCCTCGGCGGGCCCCGAGGATGCTGTACGTC TTCATACGCACCACGCTTTGTTGCGGAGTGTGTGCCCCCCTGAGGTTGCT GGGGTGGTGGGTTGCGGCTGTGTCGTGCGTGCTGAAAGGAGACAAGGCGG GACAGAGAGCGCGGACGGCTGCGAGAAAGGCTGTCCTGAAGGGGAGAGAG GGCGGGGACTACCACCTGTCGCATCTCTTGAGGCGAACGAGGTGGGGGGC GGGCGGAGGAAGCAGCAGCCTCGCGCAGGGCTTTTCGGTGCGCGACATCG TGGCGGCGATGGACGATCCGCTGCAGAGGGGCGGTCCCTTTAGAAACGTA ACGTCGTGCTTCGCGGACGAAGGCCCGAGCACGGTGGCGCAGATGAAGGC GTTAGCCAAGCGCAACCACGAGAACGAGGCACGCGTTTCGGACAGGCTTA AGGGGCTCGAGGTGGCCGTGCTTGGTACTCTCGCTCGTATGGACGCCGTT TCAGAGGAGACCGCCAAAGTGCAGCAGGAGTATCTCGCATCGCAGTCCGT CCGGTTATAG back to top
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