mRNA_Ecto-sp13_S_contig74087.18590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74087.18590.1
Unique NamemRNA_Ecto-sp13_S_contig74087.18590.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74087.18590.1 vs. uniprot
Match: Q8QNL3_ESV1K (EsV-1-54 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL3_ESV1K)

HSP 1 Score: 109 bits (273), Expect = 1.940e-30
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 SHGHDFFHSLEAGRWPPAQHPKRIPFNHWISLGIIHRGHRDVPIEPVLHFRVH 159
            SHGHDF HSLEAGRWPPAQHPKRI FNHWISLGIIHRGH DV IEPVLH RVH
Sbjct:    2 SHGHDFSHSLEAGRWPPAQHPKRISFNHWISLGIIHRGHCDVSIEPVLHLRVH 54
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BLAST of mRNA_Ecto-sp13_S_contig74087.18590.1 vs. uniprot
Match: D8LP87_ECTSI (EsV-1-54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP87_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.110e-29
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 SHGHDFFHSLEAGRWPPAQHPKRIPFNHWISLGIIHRGHRDVPIEPVLHFRVH 159
            SHGHDF HSLEAGRWPPAQHPKRI  NHWISLGIIHRGHRDV IEPVLH  VH
Sbjct:    2 SHGHDFSHSLEAGRWPPAQHPKRISSNHWISLGIIHRGHRDVTIEPVLHLTVH 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74087.18590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL3_ESV1K1.940e-3090.57EsV-1-54 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP87_ECTSI1.110e-2988.68EsV-1-54 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74087contigEcto-sp13_S_contig74087:292..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionEsV-1-54
Ec32 orthologEc-06_006250.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464010.116191-CDS-Ecto-sp13_S_contig74087:291..4531681464010.116191-CDS-Ecto-sp13_S_contig74087:291..453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74087 292..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74087.18590.1prot_Ecto-sp13_S_contig74087.18590.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74087 292..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74087.18590.1

>prot_Ecto-sp13_S_contig74087.18590.1 ID=prot_Ecto-sp13_S_contig74087.18590.1|Name=mRNA_Ecto-sp13_S_contig74087.18590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
SHGHDFFHSLEAGRWPPAQHPKRIPFNHWISLGIIHRGHRDVPIEPVLHF
RVH*
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mRNA from alignment at Ecto-sp13_S_contig74087:292..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74087.18590.1 ID=mRNA_Ecto-sp13_S_contig74087.18590.1|Name=mRNA_Ecto-sp13_S_contig74087.18590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74087:292..453- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCATGGACACGATTTCTTCCATAGTCTTGAAGCCGGGCGCTGGCCTCC
CGCTCAGCACCCAAAACGGATACCCTTTAACCATTGGATATCTCTTGGTA
TCATCCACCGTGGTCACCGTGACGTTCCGATTGAACCAGTCCTGCATTTC
AGAGTCCATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74087:292..453-

>mRNA_Ecto-sp13_S_contig74087.18590.1 ID=mRNA_Ecto-sp13_S_contig74087.18590.1|Name=mRNA_Ecto-sp13_S_contig74087.18590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74087:292..453- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCATGGACACGATTTCTTCCATAGTCTTGAAGCCGGGCGCTGGCCTCC
CGCTCAGCACCCAAAACGGATACCCTTTAACCATTGGATATCTCTTGGTA
TCATCCACCGTGGTCACCGTGACGTTCCGATTGAACCAGTCCTGCATTTC
AGAGTCCATTGA
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