mRNA_Ecto-sp13_S_contig74084.18589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74084.18589.1
Unique NamemRNA_Ecto-sp13_S_contig74084.18589.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74084.18589.1 vs. uniprot
Match: D7FYD2_ECTSI (Superoxide dismutase, Destroys radicals which are normally produced within the cells and which are t n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 9.980e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -1 
Query:  413 DYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ 529
            DYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ
Sbjct:  102 DYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ 140
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BLAST of mRNA_Ecto-sp13_S_contig74084.18589.1 vs. uniprot
Match: A0A6H5JBD2_9PHAE (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.950e-19
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -1 
Query:  413 DYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ 529
            DYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ
Sbjct:  102 DYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ 140
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BLAST of mRNA_Ecto-sp13_S_contig74084.18589.1 vs. uniprot
Match: A0A836CJJ6_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ6_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.590e-6
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = -1 
Query:  413 RRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQ 511
            R AGGG+VNHDL+W  LSPWGG PP   S TIQ
Sbjct:   99 RNAGGGYVNHDLWWKSLSPWGGVPPTDASPTIQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74084.18589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYD2_ECTSI9.980e-20100.00Superoxide dismutase, Destroys radicals which are ... [more]
A0A6H5JBD2_9PHAE9.950e-19100.00Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. C... [more]
A0A836CJJ6_9STRA7.590e-669.70Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74084contigEcto-sp13_S_contig74084:44..572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size531
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464010.0747354-CDS-Ecto-sp13_S_contig74084:43..4631681464010.0747354-CDS-Ecto-sp13_S_contig74084:43..463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74084 44..463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464010.0863512-UTR-Ecto-sp13_S_contig74084:463..5721681464010.0863512-UTR-Ecto-sp13_S_contig74084:463..572Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74084 464..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74084.18589.1prot_Ecto-sp13_S_contig74084.18589.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74084 44..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74084.18589.1

>prot_Ecto-sp13_S_contig74084.18589.1 ID=prot_Ecto-sp13_S_contig74084.18589.1|Name=mRNA_Ecto-sp13_S_contig74084.18589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
QTHTHEHIRTQTYTRQPRGAGSGSTQGQEQAGTGCEAITQKALFFSSRGT
SFSNDKIQPGLYTASAKTRATNCHVLPPDARLAYSLLNDREEEEEEKEEE
EEDEEHELNHRVFSTTKQRKAKKTLARLSFSCSLEDPPE*
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mRNA from alignment at Ecto-sp13_S_contig74084:44..572+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74084.18589.1 ID=mRNA_Ecto-sp13_S_contig74084.18589.1|Name=mRNA_Ecto-sp13_S_contig74084.18589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74084:44..572+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGCACACACACGAACACATTCGGACACAGACTTACACACGCCAACC
GCGCGGTGCCGGCAGCGGCAGTACACAAGGCCAGGAACAAGCAGGAACAG
GATGTGAAGCAATCACTCAAAAGGCACTTTTTTTTTCATCGCGTGGCACG
AGTTTTTCGAATGACAAGATTCAGCCGGGACTGTACACCGCCAGTGCAAA
GACGCGAGCTACAAACTGCCACGTTTTGCCGCCAGATGCCCGGCTTGCGT
ACTCTCTCCTGAACGACCGGGAGGAGGAAGAGGAGGAGAAAGAGGAGGAG
GAAGAGGACGAGGAGCACGAACTCAACCACCGTGTTTTCAGTACCACAAA
ACAACGTAAGGCCAAAAAAACACTTGCTCGATTATCTTTCTCTTGCTCTC
TCGAGGACCCACCTGAATAGTATCTGACTCTTGCCCTGGAGGGTGTCCCC
CCCAAGGCGACAGCACGTTCCAGAACAAGTCGTGGTTCACGAACCCTCCC
CCCGCCCGACGAGCAGCCGCTCGGTAGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74084:44..572+

>mRNA_Ecto-sp13_S_contig74084.18589.1 ID=mRNA_Ecto-sp13_S_contig74084.18589.1|Name=mRNA_Ecto-sp13_S_contig74084.18589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74084:44..572+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGCACACACACGAACACATTCGGACACAGACTTACACACGCCAACC
GCGCGGTGCCGGCAGCGGCAGTACACAAGGCCAGGAACAAGCAGGAACAG
GATGTGAAGCAATCACTCAAAAGGCACTTTTTTTTTCATCGCGTGGCACG
AGTTTTTCGAATGACAAGATTCAGCCGGGACTGTACACCGCCAGTGCAAA
GACGCGAGCTACAAACTGCCACGTTTTGCCGCCAGATGCCCGGCTTGCGT
ACTCTCTCCTGAACGACCGGGAGGAGGAAGAGGAGGAGAAAGAGGAGGAG
GAAGAGGACGAGGAGCACGAACTCAACCACCGTGTTTTCAGTACCACAAA
ACAACGTAAGGCCAAAAAAACACTTGCTCGATTATCTTTCTCTTGCTCTC
TCGAGGACCCACCTGAATAG
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