mRNA_Ecto-sp13_S_contig74039.18586.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74039.18586.1
Unique NamemRNA_Ecto-sp13_S_contig74039.18586.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI001CA4A915 (hypothetical protein n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=UPI001CA4A915)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-8
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAKQGAGPA LA+DL F+RT + HAAAVHGV+V+AE
Sbjct:   26 RKRAKQGAGPATLAIDLPFIRTIITHAAAVHGVEVSAE 63
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI001FE880B3 (site-specific integrase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001FE880B3)

HSP 1 Score: 57.4 bits (137), Expect = 1.390e-8
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAKQGAGPA LA+DLSF+RT + HAAAVHGV+V+AE
Sbjct:   26 RKRAKQGAGPATLAIDLSFIRTIITHAAAVHGVEVSAE 63
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI001F1E4735 (hypothetical protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001F1E4735)

HSP 1 Score: 56.2 bits (134), Expect = 1.470e-8
Identity = 26/38 (68.42%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAKQGAGPA LA+D+SF+RT + HAAAVHG++V+AE
Sbjct:  112 RKRAKQGAGPATLAIDMSFIRTIITHAAAVHGIEVSAE 149
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI0020002FCD (hypothetical protein n=1 Tax=Bradyrhizobium sp. 191 TaxID=2782659 RepID=UPI0020002FCD)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-8
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAKQGAGPA LA+DLSF+RT + HAAAVHG++V+AE
Sbjct:  112 RKRAKQGAGPATLAIDLSFIRTIITHAAAVHGIEVSAE 149
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI001FEC9540 (hypothetical protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001FEC9540)

HSP 1 Score: 55.8 bits (133), Expect = 3.590e-8
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RA+QGAGPA LA+DLSF+RT + HAAAVHGV+V+AE
Sbjct:   88 RKRAEQGAGPATLAIDLSFIRTIMTHAAAVHGVEVSAE 125
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI002011ABF2 (site-specific integrase n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0240 TaxID=2807669 RepID=UPI002011ABF2)

HSP 1 Score: 56.2 bits (134), Expect = 4.020e-8
Identity = 26/38 (68.42%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAKQGAGPA LA+D+SF+RT + HAAAVHG++V+AE
Sbjct:  112 RKRAKQGAGPATLAIDMSFIRTIITHAAAVHGIEVSAE 149
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: A0A0R3NAR1_9BRAD (Integrase n=31 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3NAR1_9BRAD)

HSP 1 Score: 56.2 bits (134), Expect = 4.300e-8
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAKQGAGPA L+VDLSF+RT + HAAAVHG++V+AE
Sbjct:  112 RKRAKQGAGPATLSVDLSFIRTIITHAAAVHGIEVSAE 149
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI001FF81D76 (site-specific integrase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001FF81D76)

HSP 1 Score: 55.8 bits (133), Expect = 5.190e-8
Identity = 26/38 (68.42%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAK+GAGPA LA+DLSF+RT + HAAAVHG++V+AE
Sbjct:  113 RKRAKEGAGPATLAIDLSFIRTIITHAAAVHGIEVSAE 150
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: UPI001FF90E95 (hypothetical protein n=2 Tax=Bradyrhizobium sp. 1 TaxID=241591 RepID=UPI001FF90E95)

HSP 1 Score: 55.8 bits (133), Expect = 5.880e-8
Identity = 26/38 (68.42%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAK+GAGPA LA+DLSF+RT + HAAAVHG++V+AE
Sbjct:  112 RKRAKEGAGPATLAIDLSFIRTIITHAAAVHGIEVSAE 149
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BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Match: A0A0R3MYY4_9BRAD (Integrase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3MYY4_9BRAD)

HSP 1 Score: 55.5 bits (132), Expect = 8.060e-8
Identity = 26/38 (68.42%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAE 114
            ++RAK+GAGPA LA+DLSF+RT ++HAAAVHG++V+AE
Sbjct:  112 RKRAKKGAGPATLAIDLSFIRTIVSHAAAVHGIEVSAE 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74039.18586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CA4A9151.190e-871.05hypothetical protein n=1 Tax=Bradyrhizobium canari... [more]
UPI001FE880B31.390e-873.68site-specific integrase n=2 Tax=Bradyrhizobium Tax... [more]
UPI001F1E47351.470e-868.42hypothetical protein n=2 Tax=Bradyrhizobium TaxID=... [more]
UPI0020002FCD1.910e-871.05hypothetical protein n=1 Tax=Bradyrhizobium sp. 19... [more]
UPI001FEC95403.590e-871.05hypothetical protein n=1 Tax=Bradyrhizobium liaoni... [more]
UPI002011ABF24.020e-868.42site-specific integrase n=1 Tax=Bradyrhizobium sp.... [more]
A0A0R3NAR1_9BRAD4.300e-871.05Integrase n=31 Tax=Bradyrhizobium TaxID=374 RepID=... [more]
UPI001FF81D765.190e-868.42site-specific integrase n=1 Tax=unclassified Brady... [more]
UPI001FF90E955.880e-868.42hypothetical protein n=2 Tax=Bradyrhizobium sp. 1 ... [more]
A0A0R3MYY4_9BRAD8.060e-868.42Integrase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74039contigEcto-sp13_S_contig74039:8..127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464009.9636736-CDS-Ecto-sp13_S_contig74039:7..1271681464009.9636736-CDS-Ecto-sp13_S_contig74039:7..127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74039 8..127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74039.18586.1prot_Ecto-sp13_S_contig74039.18586.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74039 8..127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74039.18586.1

>prot_Ecto-sp13_S_contig74039.18586.1 ID=prot_Ecto-sp13_S_contig74039.18586.1|Name=mRNA_Ecto-sp13_S_contig74039.18586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
KRRAKQGAGPAALAVDLSFMRTTLAHAAAVHGVDVAAEVA
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mRNA from alignment at Ecto-sp13_S_contig74039:8..127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74039.18586.1 ID=mRNA_Ecto-sp13_S_contig74039.18586.1|Name=mRNA_Ecto-sp13_S_contig74039.18586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74039:8..127+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGACGGGCAAAACAGGGCGCGGGGCCCGCAGCCCTCGCCGTTGATCT
CTCATTTATGCGGACCACTCTGGCCCACGCCGCCGCCGTCCACGGCGTCG
ACGTCGCCGCGGAGGTTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74039:8..127+

>mRNA_Ecto-sp13_S_contig74039.18586.1 ID=mRNA_Ecto-sp13_S_contig74039.18586.1|Name=mRNA_Ecto-sp13_S_contig74039.18586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74039:8..127+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGACGGGCAAAACAGGGCGCGGGGCCCGCAGCCCTCGCCGTTGATCT
CTCATTTATGCGGACCACTCTGGCCCACGCCGCCGCCGTCCACGGCGTCG
ACGTCGCCGCGGAGGTTGCT
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