mRNA_Ecto-sp13_S_contig12204.1858.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12204.1858.1
Unique NamemRNA_Ecto-sp13_S_contig12204.1858.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12204.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12204contigEcto-sp13_S_contig12204:3539..4141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size570
Hectar predicted targeting categorymitochondrion
Exons2
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.9318483-CDS-Ecto-sp13_S_contig12204:3538..39191681462648.9318483-CDS-Ecto-sp13_S_contig12204:3538..3919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12204 3539..3919 +
1681462648.9458458-CDS-Ecto-sp13_S_contig12204:3952..41411681462648.9458458-CDS-Ecto-sp13_S_contig12204:3952..4141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12204 3953..4141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12204.1858.1prot_Ecto-sp13_S_contig12204.1858.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12204 3539..4141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12204.1858.1

>prot_Ecto-sp13_S_contig12204.1858.1 ID=prot_Ecto-sp13_S_contig12204.1858.1|Name=mRNA_Ecto-sp13_S_contig12204.1858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
VRLLWRFWWWRCSSGSSTDALPEKKRVTRQSRGEGQHRQKNRHLGCSLFC
LSIWVRAISLPMLLTMPLNHRLCLFVHGVMVVVVASWEFSPSHCRKNTAF
PFLVDDVERREGWRSTPTFCPLSLRGHEAFLCLRGRGKGGVGCGSGWPVA
PLLLQPLPPSFLAAHYPCTRFLHPILSECWDSIHRRGCPG
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mRNA from alignment at Ecto-sp13_S_contig12204:3539..4141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12204.1858.1 ID=mRNA_Ecto-sp13_S_contig12204.1858.1|Name=mRNA_Ecto-sp13_S_contig12204.1858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12204:3539..4141+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGTCTTCTTTGGCGGTTTTGGTGGTGGCGATGTTCGAGCGGGTCGTC
TACCGATGCCCTCCCAGAAAAAAAACGCGTGACTCGTCAAAGCCGCGGAG
AAGGGCAACACCGGCAAAAAAACAGGCACCTGGGTTGCAGCCTGTTTTGT
CTGTCGATCTGGGTTCGTGCGATCTCGCTCCCGATGCTGCTCACCATGCC
CCTCAACCATCGTCTCTGTCTCTTCGTGCACGGGGTGATGGTGGTCGTGG
TGGCCTCATGGGAGTTCTCGCCCAGCCACTGTCGAAAAAACACGGCTTTT
CCTTTTCTTGTGGATGACGTAGAAAGAAGAGAGGGATGGAGGAGCACCCC
AACGTTCTGTCCTCTCTCGCTTCGCGGGCACGCTTTCGCATGTGCTTTGC
ACGGAGAGGATGAGGAAGCTTTCCTTTGTCTCCGCGGGCGCGGGAAGGGA
GGGGTTGGTTGTGGTTCAGGGTGGCCTGTGGCACCTCTCCTGCTGCAACC
CCTTCCCCCCTCCTTCTTGGCTGCACACTACCCCTGTACCCGTTTCTTGC
ATCCCATCCTGAGTGAGTGCTGGGATTCGATTCATCGGCGCGGATGTCCG
GGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12204:3539..4141+

>mRNA_Ecto-sp13_S_contig12204.1858.1 ID=mRNA_Ecto-sp13_S_contig12204.1858.1|Name=mRNA_Ecto-sp13_S_contig12204.1858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12204:3539..4141+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGTCTTCTTTGGCGGTTTTGGTGGTGGCGATGTTCGAGCGGGTCGTC
TACCGATGCCCTCCCAGAAAAAAAACGCGTGACTCGTCAAAGCCGCGGAG
AAGGGCAACACCGGCAAAAAAACAGGCACCTGGGTTGCAGCCTGTTTTGT
CTGTCGATCTGGGTTCGTGCGATCTCGCTCCCGATGCTGCTCACCATGCC
CCTCAACCATCGTCTCTGTCTCTTCGTGCACGGGGTGATGGTGGTCGTGG
TGGCCTCATGGGAGTTCTCGCCCAGCCACTGTCGAAAAAACACGGCTTTT
CCTTTTCTTGTGGATGACGTAGAAAGAAGAGAGGGATGGAGGAGCACCCC
AACGTTCTGTCCTCTCTCGCTTCGCGGGCACGAAGCTTTCCTTTGTCTCC
GCGGGCGCGGGAAGGGAGGGGTTGGTTGTGGTTCAGGGTGGCCTGTGGCA
CCTCTCCTGCTGCAACCCCTTCCCCCCTCCTTCTTGGCTGCACACTACCC
CTGTACCCGTTTCTTGCATCCCATCCTGAGTGAGTGCTGGGATTCGATTC
ATCGGCGCGGATGTCCGGGC
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