prot_Ecto-sp13_S_contig74.18579.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig74.18579.1
Unique Nameprot_Ecto-sp13_S_contig74.18579.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length428
Homology
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 3.530e-174
Identity = 283/324 (87.35%), Postives = 290/324 (89.51%), Query Frame = 0
Query:    1 MRLDVWTAAVAFYVLPQETLSEFAVAGLCQEGSLDARVFRVRPPCPSSSICRGNSNGDVAATAMDRDIAKQHEAGPPRTSSEATQSKHKAPAAXXXXXXXXXXGRAGEXXXXXXXEATAVGTPMAEGATRFERGGAALTESRGGGRGMPSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYSAGCEDTEARAAELKAGVKRSRATVSDSSGETEPGTSHQRLSPVDFVGLPVQRPGAGVDLSGVLEALFE 324
            MRLDVWTAAVAF VLPQETLSEFAVAG  ++GSLDA VFRVRP CPSSS  RGNSNGDVAATAMDR+IAK HEAGPPR SSE TQSKH APAA   XXXXXX GRAGE  XXXXX     G PMAEGATRFERGGAA+TESRG GRGMPSVTLKLAMDRNGAVDDMSEGPKRFTS ASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLN GQTRQPTRVVLDRTLRLTGAQAGQNPRAIL DGHSSLVFYSAGCEDTEARAAELKA VKRSR  VSDS GETEP TSHQ+L+PVDFVG+PVQRPGAGVDLSGVL AL E
Sbjct:    1 MRLDVWTAAVAFSVLPQETLSEFAVAGR-RQGSLDAGVFRVRPSCPSSSSYRGNSNGDVAATAMDRNIAKHHEAGPPRISSETTQSKHVAPAAAAAXXXXXX-GRAGEAEXXXXXXXXXXGAPMAEGATRFERGGAAVTESRGRGRGMPSVTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAAELKADVKRSRTAVSDSPGETEPDTSHQKLAPVDFVGMPVQRPGAGVDLSGVLGALLE 322          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.840e-31
Identity = 78/137 (56.93%), Postives = 95/137 (69.34%), Query Frame = 0
Query:  138 LTESRGGGRGMPSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGH-SSLVFYSAGCEDTEARAAELKAGV 273
            +  + G     P VTLKLA+D+ GAVDD SE PKRFTS  SLDAVHR+RRD  AV+VGV TVVRD+PSLTVRRVPL +GQ +QP RVVLDR LR+  A   Q    +L DGH ++++F +      +ARAAEL   V
Sbjct:    1 MAANGGAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQ-QQPLRVVLDRNLRIPEADQCQ----LLSDGHPTAVLFTNTPGTFVKARAAELMLSV 132          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC)

HSP 1 Score: 122 bits (307), Expect = 1.190e-28
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 0
Query:  149 PSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYSAG 258
            P VT+KLA+DR GAVDD +  P RFT +ASLDAVHR+RR+ EAV+VGV TVVRDDPSLTVRRVPL   Q RQP RVVLDR+LR+  +        +L D H +LV+Y  G
Sbjct:   21 PRVTVKLAVDRKGAVDDATLKPGRFTCEASLDAVHRLRRESEAVVVGVETVVRDDPSLTVRRVPLRPDQ-RQPIRVVLDRSLRIPYSST------LLNDRHRTLVYYVQG 123          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A7S1GRL0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GRL0_HEMAN)

HSP 1 Score: 114 bits (285), Expect = 2.200e-26
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 0
Query:  149 PSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLR 231
            P+VTLK+A+D N AVDD +   KRFTS ASLDAVHR+RRD  AVLVGVGTV RDDP LTVRRVPL EGQ  QP RVVLD +LR
Sbjct:   70 PTVTLKIAIDTNWAVDDAALTAKRFTSPASLDAVHRLRRDSSAVLVGVGTVCRDDPGLTVRRVPLREGQ-EQPLRVVLDPSLR 151          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A6U6BWZ9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BWZ9_GUITH)

HSP 1 Score: 117 bits (293), Expect = 3.690e-26
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = 0
Query:  148 MPSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYS 256
            +P VTLK+A+D NGAVDD+    KRFTS+ SLDAVHR+RR  +AVLVG+GTVVRDDPSLTVRRVPL EG+  QP R V+D +L++      +    ++ DG+ +++F+S
Sbjct:   77 LPIVTLKIALDENGAVDDLGITSKRFTSEQSLDAVHRLRRCSDAVLVGIGTVVRDDPSLTVRRVPLLEGR-EQPLRAVIDPSLKI------EAHCKVMRDGYKTVIFHS 178          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A832V5V4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=2 Tax=Archaea TaxID=2157 RepID=A0A832V5V4_9ARCH)

HSP 1 Score: 118 bits (296), Expect = 4.570e-26
Identity = 63/114 (55.26%), Postives = 83/114 (72.81%), Query Frame = 0
Query:  148 MPSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYSAGCED 261
            +P VTLK+A+D+NGAVDD +E   RFTSQ SLDAVHR+R+D +A++VGVGTV+RD+PSLTVRR+ L EG+  QP RVVLDR L+            I+ D H +L+F+  G E+
Sbjct:  155 IPLVTLKVAIDKNGAVDDRAEDSFRFTSQESLDAVHRLRKDVDAIIVGVGTVLRDNPSLTVRRIELGEGK--QPLRVVLDRELKTP------IDSIIVNDDHDTLIFHVEGREE 260          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A7C7HSY4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=4 Tax=Archaea TaxID=2157 RepID=A0A7C7HSY4_9ARCH)

HSP 1 Score: 117 bits (294), Expect = 8.360e-26
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 0
Query:  149 PSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYSAG 258
            P VTLK+A DRNGAVDD++   KRFTS  SLDAVHR+RRDC+A+++GV T+VRD+PSLTVRR+ L  G  RQP R++LDR LR            +L D H +++ ++ G
Sbjct:  154 PLVTLKIATDRNGAVDDLALASKRFTSPDSLDAVHRLRRDCDAIIIGVETIVRDNPSLTVRRIELGHG--RQPVRIILDRALRTP------LDSTVLADEHQTMILHTEG 255          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A075GPM0_9EURY (Riboflavin biosynthesis protein (RibD) n=1 Tax=uncultured marine group II/III euryarchaeote KM3_178_D06 TaxID=1457940 RepID=A0A075GPM0_9EURY)

HSP 1 Score: 115 bits (288), Expect = 4.510e-25
Identity = 59/115 (51.30%), Postives = 79/115 (68.70%), Query Frame = 0
Query:  146 RGMPSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYSAGCE 260
            R  P VTLK A+DRNG VD   + P RFTS+ SLDAVH +RR C+AV+VGV TV+RDDP LTVRRVP+ +G+  QP R++LDR LR            ++ DG ++++F+S G +
Sbjct:  154 RRRPLVTLKAAIDRNGRVDSEHDAPGRFTSEESLDAVHELRRRCDAVVVGVNTVIRDDPELTVRRVPIGKGK--QPLRIILDRRLRTP------TDSKLVSDGGNTIIFHSEGTD 260          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A7S4EBC2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBC2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 8.140e-25
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0
Query:  151 VTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVF 254
            VTLKLAMDRNGAVDD+ +  +RFTS ASLDAVHR+RR C+AVLVG  TV RDDPSLTVRRVPL   +T QP RVVL R      A AG     +L DG  ++VF
Sbjct:   65 VTLKLAMDRNGAVDDLGDKAERFTSPASLDAVHRLRRHCDAVLVGASTVARDDPSLTVRRVPLAP-RTAQPLRVVLGRA----PADAG-----LLTDGLETVVF 158          
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Match: A0A842P3K4_9EURY (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A842P3K4_9EURY)

HSP 1 Score: 110 bits (276), Expect = 2.130e-23
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 0
Query:  148 MPSVTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHSSLVFYSAGCE 260
            +P VTLK+A+D NGAVDD +E   RFTS+ SL+AVHR+R+D +A++VG+GT++RD+PSLTVRR+ +  G+  QP RV+LDR L+            I+ DGH++L+ +  G E
Sbjct:  143 IPLVTLKIAVDSNGAVDDRAEDSFRFTSEESLNAVHRLRKDVDAIIVGIGTIIRDNPSLTVRRIEMGLGK--QPLRVILDRELKTP------LDSTIVNDGHNTLILHVEGRE 247          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74.18579.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMH2_ECTSI3.530e-17487.35RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CBN8_9STRA1.840e-3156.93Riboflavin biosynthesis protein n=1 Tax=Tribonema ... [more]
I2CPJ6_NANGC1.190e-2861.82Riboflavin biosynthesis protein n=1 Tax=Nannochlor... [more]
A0A7S1GRL0_HEMAN2.200e-2673.49Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U6BWZ9_GUITH3.690e-2655.96Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A832V5V4_9ARCH4.570e-2655.26Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A7C7HSY4_9ARCH8.360e-2653.64Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A075GPM0_9EURY4.510e-2551.30Riboflavin biosynthesis protein (RibD) n=1 Tax=unc... [more]
A0A7S4EBC2_9STRA8.140e-2563.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A842P3K4_9EURY2.130e-2349.56Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002734Bacterial bifunctional deaminase-reductase, C-terminalPFAMPF01872RibD_Ccoord: 149..266
e-value: 2.6E-15
score: 56.8
IPR024072Dihydrofolate reductase-like domain superfamilyGENE3D3.40.430.10coord: 137..328
e-value: 1.0E-27
score: 98.7
IPR024072Dihydrofolate reductase-like domain superfamilySUPERFAMILY53597Dihydrofolate reductase-likecoord: 149..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..370
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 390..427
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 371..389

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74contigEcto-sp13_S_contig74:24161..29693 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74.18579.1mRNA_Ecto-sp13_S_contig74.18579.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig74 23980..29705 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig74.18579.1 ID=prot_Ecto-sp13_S_contig74.18579.1|Name=mRNA_Ecto-sp13_S_contig74.18579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=428bp
MRLDVWTAAVAFYVLPQETLSEFAVAGLCQEGSLDARVFRVRPPCPSSSI
CRGNSNGDVAATAMDRDIAKQHEAGPPRTSSEATQSKHKAPAAAAAAAAA
ATTGRAGEAEAARAAEATAVGTPMAEGATRFERGGAALTESRGGGRGMPS
VTLKLAMDRNGAVDDMSEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVV
RDDPSLTVRRVPLNEGQTRQPTRVVLDRTLRLTGAQAGQNPRAILGDGHS
SLVFYSAGCEDTEARAAELKAGVKRSRATVSDSSGETEPGTSHQRLSPVD
FVGLPVQRPGAGVDLSGVLEALFEGWVRAPWLHQVGRRRSGVLDSTGAWL
ARGGGWHLALIFLVAEVCCEAVVRIVLLLALVFSVFPLARMHERAPIRGG
GSVELCKGGMKTLKHHQQEGCRPRKIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002734RibDG_C
IPR024072DHFR-like_dom_sf