mRNA_Ecto-sp13_S_contig73999.18574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73999.18574.1
Unique NamemRNA_Ecto-sp13_S_contig73999.18574.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.540e-34
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQLMEM+SAPS   XXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL
Sbjct:   30 DMCAAPGSKTAQLMEMVSAPSXXXXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 111
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.460e-32
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXP--DGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQLMEMISAPSAT XXXXXXXXXXXX   DG+VGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL
Sbjct:  184 DMCAAPGSKTAQLMEMISAPSATXXXXXXXXXXXXXXXXDGDVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 267
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A835ZA58_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA58_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.520e-22
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQL+EM++AP++T+             +   GLV+AND++RDRAY+LAHQC+R  +P +C+TWC+AQ  P L
Sbjct:   79 DMCAAPGSKTAQLLEMVTAPASTSTAG----------ESPEGLVIANDANRDRAYLLAHQCRRTAAPCLCVTWCAAQLFPTL 150
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A7S3HLB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLB6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.840e-15
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKT+QL+E+++   A              P+ E GLVVAND+D DRAYML HQC+R+ SP + ++    Q  P++
Sbjct:  177 DMCAAPGSKTSQLLEIVNRSLAN-------------PESEQGLVVANDADTDRAYMLVHQCRRINSPLLVVSTHKGQHFPSI 245
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A2N1J9U5_9BASI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1J9U5_9BASI)

HSP 1 Score: 72.4 bits (176), Expect = 5.210e-13
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDG----EVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQL+E I +P  ++            PD      +G+VVANDSD  RA+ML HQ +R+ SP +C+T   A +LPN+
Sbjct:  167 DMCAAPGSKTAQLIEAIHSPLTSS------------PDAFDPMPLGVVVANDSDTKRAHMLVHQAQRLPSPNLCVTNVDASNLPNV 240
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A7S2B270_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B270_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.700e-13
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGE-VGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKT+Q++E+I + + ++              GE  GL+VANDSD  RAYML HQCKR+ SPA+ +     Q LP+L
Sbjct:   80 DMCAAPGSKTSQILEVIQSSTDSS--------------GEPTGLIVANDSDTQRAYMLCHQCKRLNSPALMVVTHLGQYLPDL 148
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A3G2S7V4_9BASI (Multisite-specific tRNA:(Cytosine-C(5))-methyltransferase trm4b n=1 Tax=Malassezia restricta CBS 7877 TaxID=425264 RepID=A0A3G2S7V4_9BASI)

HSP 1 Score: 71.6 bits (174), Expect = 9.730e-13
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDG----EVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQL+E I +P  ++            PD      +G+VVANDSD  RA+ML HQ +R+ SP +C+T   A ++PN+
Sbjct:  173 DMCAAPGSKTAQLIEAIHSPLTSS------------PDAFDPMPLGVVVANDSDTKRAHMLVHQSQRLPSPNLCVTNVDASNMPNI 246
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: UPI001588E3B1 (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI001588E3B1)

HSP 1 Score: 70.5 bits (171), Expect = 2.470e-12
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPN 243
            DMCAAPGSKTAQL+EMI A  + +                 G VVAND D +R YML HQ KR+ SP I IT C +  +PN
Sbjct:  184 DMCAAPGSKTAQLIEMIHADESISSPK--------------GFVVANDLDNNRCYMLVHQAKRLNSPNILITNCDSSIMPN 250
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A4P9YYP0_9FUNG (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYP0_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 2.500e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQL+E + + +AT                  G+V+AND+D  RAYML HQ +R+QSP + +T   AQ  PN+
Sbjct:  134 DMCAAPGSKTAQLVEALHSGNATGAIP-------------AGMVIANDADARRAYMLVHQMRRLQSPCLIVTNHEAQHFPNV 202
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BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Match: A0A0L0S643_ALLM3 (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S643_ALLM3)

HSP 1 Score: 70.1 bits (170), Expect = 3.380e-12
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 DMCAAPGSKTAQLMEMISAPSATAXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNL 246
            DMCAAPGSKTAQL+E + A                 PDG   LVVAND+D  RAYML HQ KR+Q+P + IT  +AQ  P+L
Sbjct:  171 DMCAAPGSKTAQLIEAVDATDVEGQL----------PDG---LVVANDADGKRAYMLVHQTKRLQTPCLLITNHAAQMFPSL 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73999.18574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ3_ECTSI5.540e-3495.12SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A6H5LDC1_9PHAE2.460e-3294.05SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A835ZA58_9STRA7.520e-2253.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S3HLB6_9STRA8.840e-1546.34Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2N1J9U5_9BASI5.210e-1347.67SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A7S2B270_9STRA9.700e-1348.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3G2S7V4_9BASI9.730e-1346.51Multisite-specific tRNA:(Cytosine-C(5))-methyltran... [more]
UPI001588E3B12.470e-1249.38tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax... [more]
A0A4P9YYP0_9FUNG2.500e-1246.34S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A0L0S643_ALLM33.380e-1251.22SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73999contigEcto-sp13_S_contig73999:419..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score130.2
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog2880.D8LLJ3
Model size246
KEGG koko:K15334,ko:K15335
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.tRNA (cytosine-5-)-methyltransferase activity
EggNOG OGsCOG0144@1,KOG2198@2759
EC2.1.1.202,2.1.1.203
Cds size243
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.2993922-CDS-Ecto-sp13_S_contig73999:418..6611681464008.2993922-CDS-Ecto-sp13_S_contig73999:418..661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73999 419..661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.3116286-UTR-Ecto-sp13_S_contig73999:661..6641681464008.3116286-UTR-Ecto-sp13_S_contig73999:661..664Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig73999 662..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73999.18574.1prot_Ecto-sp13_S_contig73999.18574.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73999 419..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73999.18574.1

>prot_Ecto-sp13_S_contig73999.18574.1 ID=prot_Ecto-sp13_S_contig73999.18574.1|Name=mRNA_Ecto-sp13_S_contig73999.18574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MCAAPGSKTAQLMEMISAPSATAAAAGGGGEGGGGPDGEVGLVVANDSDR
DRAYMLAHQCKRVQSPAICITWCSAQSLPNL
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mRNA from alignment at Ecto-sp13_S_contig73999:419..664-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73999.18574.1 ID=mRNA_Ecto-sp13_S_contig73999.18574.1|Name=mRNA_Ecto-sp13_S_contig73999.18574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73999:419..664- (Ectocarpus species13 EcNAP12_S_4_19m)
GACATGTGTGCAGCCCCGGGCTCGAAGACGGCGCAGCTGATGGAGATGAT
TTCCGCTCCTTCCGCCACCGCCGCCGCGGCTGGCGGGGGGGGAGAGGGGG
GCGGCGGACCGGACGGGGAGGTGGGGTTGGTGGTGGCGAATGACAGCGAC
CGCGACCGTGCGTACATGCTGGCGCACCAGTGCAAGAGGGTCCAGAGCCC
GGCCATCTGCATCACGTGGTGCTCGGCGCAGTCGCTGCCTAACCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73999:419..664-

>mRNA_Ecto-sp13_S_contig73999.18574.1 ID=mRNA_Ecto-sp13_S_contig73999.18574.1|Name=mRNA_Ecto-sp13_S_contig73999.18574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73999:419..664- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGCAGCCCCGGGCTCGAAGACGGCGCAGCTGATGGAGATGATTTC
CGCTCCTTCCGCCACCGCCGCCGCGGCTGGCGGGGGGGGAGAGGGGGGCG
GCGGACCGGACGGGGAGGTGGGGTTGGTGGTGGCGAATGACAGCGACCGC
GACCGTGCGTACATGCTGGCGCACCAGTGCAAGAGGGTCCAGAGCCCGGC
CATCTGCATCACGTGGTGCTCGGCGCAGTCGCTGCCTAACCTT
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