prot_Ecto-sp13_S_contig7393.18570.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7393.18570.1
Unique Nameprot_Ecto-sp13_S_contig7393.18570.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length201
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7393.18570.1 vs. uniprot
Match: D7FK73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK73_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 2.800e-112
Identity = 191/198 (96.46%), Postives = 196/198 (98.99%), Query Frame = 0 
Query:    4 QGDGFIKIGQAAKACICYSQQISNLGMQSDRMGLSALGVAHARLAKAQRACDRVDLAAVSFERALELSIEGKHLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDEEHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRAY 201
            QGDGFIKIGQAAKACICYS+QISNL +QSDRMGL+ALGVAHARLAKAQ+ACDRVDLAAVSFERALELS EGKHLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVD+EHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRAY
Sbjct:  840 QGDGFIKIGQAAKACICYSRQISNLDVQSDRMGLTALGVAHARLAKAQKACDRVDLAAVSFERALELSTEGKHLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDDEHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRAY 1037
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BLAST of mRNA_Ecto-sp13_S_contig7393.18570.1 vs. uniprot
Match: A0A2R5GVW7_9STRA (F-box/WD repeat-containing protein 7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVW7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.610e-9
Identity = 48/146 (32.88%), Postives = 84/146 (57.53%), Query Frame = 0 
Query:   47 LAKAQRACDRVDLAAVSFERALELSIEGK--HLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDEEHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTA 190
            +A+  +A  +VD A V+F+R   L+ E K   L G+  AL G+ +C +    ++ A+    RAL    ++ + P  A   R L+  +  M DEE++K + +RA+++E E+ESK++   A + ++  +LV  TA  ++VI LE V+A
Sbjct: 1069 IAQCMQALHKVDRAMVNFDRMRSLACEAKSHRLEGL--ALLGISQCNMVRSAHKAAIDYADRALFIFEDLNDRPHQALACRQLQRAYTDMYDEENSKAFEERADTLELELESKVTNTFAKIAEAERKLVSVTAERSQVIELEVVSA 1212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7393.18570.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK73_ECTSI2.800e-11296.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GVW7_9STRA2.610e-932.88F-box/WD repeat-containing protein 7 n=1 Tax=Honda... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
NoneNo IPR availablePFAMPF13424TPR_12coord: 46..110
e-value: 4.8E-8
score: 33.2
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 41..74
e-value: 30.0
score: 10.8
coord: 81..114
e-value: 0.79
score: 18.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..166
e-value: 2.5E-14
score: 54.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 44..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7393contigEcto-sp13_S_contig7393:612..3376 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7393.18570.1mRNA_Ecto-sp13_S_contig7393.18570.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7393 612..3376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7393.18570.1 ID=prot_Ecto-sp13_S_contig7393.18570.1|Name=mRNA_Ecto-sp13_S_contig7393.18570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
AHLQGDGFIKIGQAAKACICYSQQISNLGMQSDRMGLSALGVAHARLAKA
QRACDRVDLAAVSFERALELSIEGKHLPGIVDALEGLGRCCLENCQYRDA
VSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDEEHAKVYADRAESI
EKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRA
Y
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf