mRNA_Ecto-sp13_S_contig12203.1857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12203.1857.1
Unique NamemRNA_Ecto-sp13_S_contig12203.1857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: D7G4H7_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H7_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 3.300e-129
Identity = 185/197 (93.91%), Postives = 191/197 (96.95%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRRKR 592
            DLANV+PLDREFFLTTKCTLYISGHGSEERISLLPL DEENGVVV MHCFE+HQEHLLPENA+FCQAL+DQY+GYDYR LMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVP AQLEEMQRKSLEAYGRMFGADVNDFRPSA+IILGILRRRLG RR R
Sbjct:   47 DLANVSPLDREFFLTTKCTLYISGHGSEERISLLPLQDEENGVVVTMHCFEEHQEHLLPENAEFCQALKDQYEGYDYRSLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPPAQLEEMQRKSLEAYGRMFGADVNDFRPSARIILGILRRRLGHRRTR 243
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: A0A6H5KKV6_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV6_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 1.060e-125
Identity = 182/196 (92.86%), Postives = 191/196 (97.45%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRRK 589
            DLANVAPLDREFFLTTKCTLY+SGHGSEERISLLPL DEE+GVVV MHCFE+HQEHLLPENA+FCQAL+DQY+GYDYR LMNSTFGLVPAGRGPATYRLGEVMSAG+IPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMM TLLAVPRAQLEEMQRKSLEAYG+MFGADVNDFRPSAKIILGI+RRRLGL RK
Sbjct:  232 DLANVAPLDREFFLTTKCTLYVSGHGSEERISLLPLQDEEHGVVVTMHCFEEHQEHLLPENAEFCQALKDQYEGYDYRSLMNSTFGLVPAGRGPATYRLGEVMSAGTIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMKTLLAVPRAQLEEMQRKSLEAYGKMFGADVNDFRPSAKIILGIIRRRLGLWRK 427
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: A0A6H5JGQ8_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ8_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 3.710e-87
Identity = 135/197 (68.53%), Postives = 160/197 (81.22%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRRKR 592
            DLA+V P DR FFLTTK +LY+SGHGS ER+SL+PL DE NGV++ +HCFE H+EHLLPEN ++C+AL DQYD + Y  LMN+TFGLVPAGR P TYRLGEVMSAGSIPVFVG DLVPPF E IDW S SFAF PD+VES+M+ TL AVPRA+LE+MQRKSLEAY R+FG ++ DF   A+I+L  L+RRL  R  R
Sbjct:  235 DLADVDPWDRNFFLTTKGSLYLSGHGSGERMSLVPLQDEANGVIMSLHCFEVHEEHLLPENVEYCRALSDQYDDHSYTSLMNTTFGLVPAGRSPGTYRLGEVMSAGSIPVFVGWDLVPPFEELIDWSSFSFAFAPDQVESQMVRTLRAVPRAELEQMQRKSLEAYRRIFGVNMGDFVQGARIVLETLQRRLEHRMTR 431
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: D7G4H3_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H3_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 8.580e-87
Identity = 133/197 (67.51%), Postives = 159/197 (80.71%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRRKR 592
            +LA+VA  DR FFLTTK TLY+SGHGS ER+SL+PL DE NGV++ +HCFE H EHLLPEN ++C+AL D+Y  + Y  LMNSTFGLVPAGR P TYRLGEVMSAGSIPVFVG DLV PF E IDW S SFAF PD+V  +M+ TL AVPRA+LE+MQRKSL+A+G++FG D + F PSA+I+L IL+RRLG R  R
Sbjct:   30 NLADVAAWDRNFFLTTKGTLYLSGHGSGERMSLVPLQDEANGVIMSLHCFEIHDEHLLPENVEYCRALSDRYGDHSYESLMNSTFGLVPAGRSPGTYRLGEVMSAGSIPVFVGWDLVLPFKELIDWSSFSFAFAPDQVGPQMVRTLRAVPRAELEQMQRKSLKAHGKIFGVDQDIFVPSARIMLEILQRRLGHRMAR 226
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: D7G4H1_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H1_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 1.240e-81
Identity = 129/197 (65.48%), Postives = 156/197 (79.19%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRRKR 592
            +LA+VA  DR FFLTTK +LY+S HGS ER+SL+PL DE NGV++ +HCFE H EHLLPEN ++C+AL D+Y  + Y  LMNSTFGLVPAGR P T+RLGEVMSAGSIPVFVG DLV PF E IDW S SFAF PD+V  +M+ TL AVPRA+LE+MQRKSL+A+ ++FG D   F PSA+I+L IL+RRLG R  R
Sbjct:  139 NLADVAAWDRNFFLTTKGSLYLSRHGSGERMSLVPLQDEANGVIMSLHCFELHNEHLLPENVEYCRALSDRYGDHSYESLMNSTFGLVPAGRSPGTFRLGEVMSAGSIPVFVGWDLVLPFKELIDWSSFSFAFAPDQVGPQMVRTLRAVPRAELEQMQRKSLKAHRKIFGVDKGIFVPSARIMLKILQRRLGHRMAR 335
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: D7G4H4_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H4_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 5.320e-75
Identity = 120/160 (75.00%), Postives = 129/160 (80.62%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTL--YISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQ 475
            DLA VAP DR FFLTT C+L  Y+  HGSEE + L+PL D+ENGV + MHCFE HQ+HLLPEN +F QA  D Y G DYR LMNSTFGLVPAG    TYRLGEVMSAGSIPVFVGRDLVP FMEQIDW SISFAFTPDEV+SR MSTLLAVPR QLE MQ
Sbjct:   23 DLAKVAPWDRRFFLTTTCSLPGYLGEHGSEEWMGLIPLQDKENGVNLSMHCFENHQDHLLPENPEFRQAQTDHYQGQDYRSLMNSTFGLVPAGWSSGTYRLGEVMSAGSIPVFVGRDLVPSFMEQIDWNSISFAFTPDEVKSRTMSTLLAVPREQLERMQ 182
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: A0A6H5JRU9_9PHAE (GT47 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRU9_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.330e-59
Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = 2 
Query:    2 DLANVAPLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRR 586
            +L  +AP  R++FLT K  LY+SG G +ER+S++PLH E  GV++ ++CFE H EHLLPEN +FC AL +    ++Y  LMN+TFGLVPAGR PATYRL EVMSAG+IPVFV RD+V PF E++DWP++SF+F P+EV   MM TL +V  A+L  MQRKS++A+  +FG +    R  A++++  L  R+G  R
Sbjct:  343 NLTELAPWHRDYFLTVKGNLYLSGVGYDERMSVVPLHSEPEGVIMGLNCFELHDEHLLPENEEFCLALNETASRHEYEDLMNTTFGLVPAGRQPATYRLAEVMSAGAIPVFVSRDMVRPFPERVDWPTLSFSFPPEEVGPAMMDTLRSVTPAELLGMQRKSVQAFYEIFGEEPGYDR-IARVVVDELVLRVGYHR 536
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: A0A6H5L9T2_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T2_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.040e-57
Identity = 103/184 (55.98%), Postives = 129/184 (70.11%), Query Frame = 2 
Query:   26 DREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLG 577
            DR++FLT K TLY+ G+G EER ++  +HD  NGVV V+ C   H +  LPEN  +CQ  R +YD YDY  LMN+TF LVPAGR P ++RLGEVMSAG+IPVFV RD + PF EQIDWPS SF F+PD+V   MM TL AV  AQL EMQRKSL AY ++FG  V ++   A   + +L +R+G
Sbjct:  343 DRDYFLTFKGTLYLRGYGLEERSAVSRVHDPANGVVSVIKCSNMHGDESLPENQDYCQRSRKRYDLYDYEKLMNTTFALVPAGRSPGSFRLGEVMSAGAIPVFVVRDWIKPFQEQIDWPSFSFVFSPDDVGPIMMETLRAVQPAQLLEMQRKSLRAYWKIFGG-VTNYSVIASNAIDMLVQRIG 525
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: D8LQY4_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.040e-52
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 2 
Query:   26 DREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTLLAVPRAQLEEMQ 475
            DR++FLT K TLY+ G+G EER ++   HD  NGVV V+ C   H + +LPEN  +CQ  R +YD YDY  LMN+TF LVPAGR P ++RLGEVMSAG+IPVFV RD + PF EQIDWPS SF F+PD+V   MM TL AV  A+L EMQ
Sbjct:   38 DRDYFLTFKGTLYLRGYGLEERSAVSRAHDPANGVVSVIKCSNMHGDDILPENQDYCQRSRKRYDLYDYEKLMNTTFALVPAGRSPGSFRLGEVMSAGAIPVFVVRDWIKPFQEQIDWPSFSFVFSPDDVGPIMMETLRAVEPARLLEMQ 187
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BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Match: A0A8J5XW27_DIALT (Exostosin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XW27_DIALT)

HSP 1 Score: 101 bits (252), Expect = 1.340e-20
Identity = 82/212 (38.68%), Postives = 108/212 (50.94%), Query Frame = 2 
Query:   20 PLDREFFLTTKCTLYISGHGSEERISLLPLHDEENGVVVVMH-----CF----------EKHQ--EHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPATYRLGEVMSAGSIPVFVGRDL-VPPFMEQIDWPSISFAFTPDEVESR--MMSTL--LAVPRAQLEEMQRKSLEAYGRMFG--ADVNDFRPSAKIILGILRRRLGLR 583
            P +R++ LT K    ++  G   R++L   HDE   V++ ++     C           E HQ     +P N   C  +R  YD YDY  LMNSTFGLV  GR PA+YRL EV++AG+IPVFVG D  V PF E I W  I+ +  P  V+ R  ++  L  LA  R QL  MQ     AY R F   A  N +    + ++ ILRRR   R
Sbjct:  224 PWERKWLLTFKG---LASAGVRARLALH--HDEPRRVIIAVYPSHHRCSSTGEALPVRSELHQLVPTSMPINHACCAQMRALYDHYDYDDLMNSTFGLVMPGRSPASYRLSEVLAAGTIPVFVGMDFAVLPFAELIPWSEIALS-APAHVDVRNALLPELRELAADREQLRRMQHGVRAAYVRYFQPVAGGNPYEHIKRTVVQILRRRFEFR 429
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12203.1857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G4H7_ECTSI3.300e-12993.91Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
A0A6H5KKV6_9PHAE1.060e-12592.86GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JGQ8_9PHAE3.710e-8768.53GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G4H3_ECTSI8.580e-8767.51Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
D7G4H1_ECTSI1.240e-8165.48Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
D7G4H4_ECTSI5.320e-7575.00Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
A0A6H5JRU9_9PHAE2.330e-5952.82GT47 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5L9T2_9PHAE6.040e-5755.98GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LQY4_ECTSI2.040e-5259.33Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
A0A8J5XW27_DIALT1.340e-2038.68Exostosin domain-containing protein n=1 Tax=Diacro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12203contigEcto-sp13_S_contig12203:2833..5143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score291.6
Seed ortholog evalue2.1e-76
Seed eggNOG ortholog2880.D7G4H7
Preferred nameEXTL1
Model size941
KEGG koko:K02366,ko:K02368,ko:K21988
KEGG TC1.A.17.4
KEGG ReactionR05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000271,GO:0000902,GO:0000904,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006044,GO:0006082,GO:0006790,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007369,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007492,GO:0007498,GO:0008150,GO:0008152,GO:0008194,GO:0008354,GO:0008375,GO:0008589,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016192,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019899,GO:0019953,GO:0021537,GO:0021772,GO:0021988,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030111,GO:0030154,GO:0030166,GO:0030176,GO:0030177,GO:0030182,GO:0030201,GO:0030202,GO:0030203,GO:0030210,GO:0030900,GO:0030968,GO:0031090,GO:0031175,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033554,GO:0033692,GO:0034620,GO:0034637,GO:0034645,GO:0034976,GO:0035295,GO:0035966,GO:0035967,GO:0036465,GO:0036498,GO:0040011,GO:0042175,GO:0042221,GO:0042328,GO:0042330,GO:0042802,GO:0042803,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045880,GO:0046982,GO:0046983,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048513,GO:0048518,GO:0048522,GO:0048565,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048706,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050508,GO:0050509,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055123,GO:0060322,GO:0060465,GO:0060828,GO:0061564,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0072498,GO:0090092,GO:0090097,GO:0090098,GO:0090100,GO:0090263,GO:0097485,GO:0098588,GO:0098657,GO:0098791,GO:0098827,GO:0099003,GO:0099504,GO:0120036,GO:0120039,GO:1901071,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Exons3
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
EC2.4.1.224,2.4.1.225
Cds size456
COG Functional cat.S
CAZyGT47,GT64
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.8422444-UTR-Ecto-sp13_S_contig12203:2832..31781681462648.8422444-UTR-Ecto-sp13_S_contig12203:2832..3178Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12203 2833..3178 -
1681462648.8733737-UTR-Ecto-sp13_S_contig12203:4366..44531681462648.8733737-UTR-Ecto-sp13_S_contig12203:4366..4453Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12203 4367..4453 -
1681462648.8847284-UTR-Ecto-sp13_S_contig12203:5091..51431681462648.8847284-UTR-Ecto-sp13_S_contig12203:5091..5143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12203 5092..5143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.8548908-CDS-Ecto-sp13_S_contig12203:3178..32981681462648.8548908-CDS-Ecto-sp13_S_contig12203:3178..3298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12203 3179..3298 -
1681462648.8638334-CDS-Ecto-sp13_S_contig12203:4030..43661681462648.8638334-CDS-Ecto-sp13_S_contig12203:4030..4366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12203 4031..4366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12203.1857.1prot_Ecto-sp13_S_contig12203.1857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12203 3179..4366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12203.1857.1

>prot_Ecto-sp13_S_contig12203.1857.1 ID=prot_Ecto-sp13_S_contig12203.1857.1|Name=mRNA_Ecto-sp13_S_contig12203.1857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MHCFEKHQEHLLPENAKFCQALRDQYDGYDYRHLMNSTFGLVPAGRGPAT
YRLGEVMSAGSIPVFVGRDLVPPFMEQIDWPSISFAFTPDEVESRMMSTL
LAVPRAQLEEMQRKSLEAYGRMFGADVNDFRPSAKIILGILRRRLGLRRK
R*
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mRNA from alignment at Ecto-sp13_S_contig12203:2833..5143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12203.1857.1 ID=mRNA_Ecto-sp13_S_contig12203.1857.1|Name=mRNA_Ecto-sp13_S_contig12203.1857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12203:2833..5143- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATCTGGCCAACGTTGCTCCTCTGGATCGGGAGTTCTTCCTAACAACAA
AGGTAGGTGCTGTCAGTGTTGTGTAGTTCGAGCTGCTGTTGTTTGTTTTC
TTGCCACTGCTGCTGCAGGTGTTGTTGTTTGTTAGCCGAAAGCCGATGTG
ACCATCTCAACACCTTCAGCACTCCCACTTTAGCACTTGCTTCACACGTC
GCCTGCGTGTTTTCTCTGAGAATTTTCTAGCGTCGTGCGCATGGGCATCA
ACAGTCCGTTCCGCCAAAAACACTGCTTGGTACAGGCTTACTGTGAAACA
GACTGCAATCGGTGGGTCGGTCTCATGCGTACACGATTTCACCTTTGATT
CTGACCTACGAACTCCATTACATGATCATACCATGTCATTGCTGACCCTA
ACAACATATGTATCACATCTGACATGCATACGCGGGTTACGGAATTCGGC
CAACCTACACGTGCCCGAGCAGATATGTTCCGGTTCACACCCTGACCTGT
AAAGACCAACCACAATATTATCAAGTCAACGCTATTGCTATTCGTGACTG
CTATCCGTGACCGCAGCAGGAAAAAATTGAGGTGTGATGCCAGCAATGCT
GGTTGTACCTGAAATAGGGATGCATAATGTTTATCAACTCTGCGACGCCC
GTTCATCACGTGTGTACTTTGTGATCGCGCTATTTACCAGTGCACATTGT
ATATTAGCGGTCACGGTTCGGAGGAAAGGATCAGTCTTTTACCGCTGCAC
GACGAAGAAAACGGCGTGGTAGTAGTCATGCACTGCTTCGAGAAACACCA
AGAGCATCTACTTCCAGAAAATGCCAAGTTCTGCCAAGCGCTGAGAGACC
AGTATGACGGCTACGACTACCGGCACCTGATGAACTCGACGTTCGGGCTA
GTACCAGCTGGACGCGGTCCTGCCACGTACCGACTCGGGGAAGTGATGAG
CGCCGGGTCGATCCCCGTATTCGTTGGTCGGGACCTAGTTCCTCCATTCA
TGGAACAAATCGACTGGCCTTCGATATCTTTCGCGTTTACGCCGGACGAA
GTGGAGTCGCGCATGATGAGTACGTTGCTGGCGGTTCCACGAGCGCAGCT
AGAGGAAATGCAGGTATATATGTGAACAACATGGCTCGAATTAGATGGGC
AGCGATGAGTACCCCCGGTGTTCCCCGCCGTTGTGAATGTGGAGAGGGTG
ATGCGTCTAAGCCACCGGGCCATTTGACGAACGTGGTGCATCGTTCCTTT
CACATGCGCCCCTTTCGGCTGAAACAAAAATCGCGGTGCCCACACCACGC
TATACGTAGTGACCAGGCATGGACGGGTGTGTACCAAGCTTGCCGAATGA
AAGCTCGTTTCTTCGCGAAGGATGGTAATGACCCACAAGCAAAGTCATTC
CATATTCTGCCGTCTCCGCACCCCCCTTATCATCTAAGCCACGCCCTTGA
AAACTTCCACGGCCATGACAAACGATGCGTATCGGTCCCGGGCTCCCAAG
AGGAGAGAGAGAGGGGGGGTGAAAGGAAGTAGATTGGAAATACCTGGCGT
TCACTGTGCGGGGCGAGTCCCAGCACAAGGTACTAGCACCACATTTCAAG
CTTACCCCTCTCCGTTGTCGCTACTTCGACTGTTCAATCGAAAATTTATT
ATAATGAACCGAGCTGTGGCTACACTCACAACAGCTGGCTAAGCTGGGCC
AGTACAGTACGTGATAACTTCCTCTACATGTCGGAGCTACATCCCTCATT
CTGCCAATCTTCGGCAAGAGGTTCGAACTTGTAACCGTACCGCACCGTTT
TCGTTTCAAATGCCATTTGACATCGACAACGGAATTGCCACAAAGCGCAA
GTCGCTCGAGGCGTATGGGAGGATGTTCGGGGCGGACGTGAACGACTTCC
GTCCAAGCGCTAAAATCATACTTGGAATTCTTCGCAGGCGGCTAGGACTC
CGGCGGAAGCGATGAAAGTGCATGCCCGGATAAAATGTTGTGCAGGGTTC
GTGAATTTCCGAGCTCATGGTTGCAGCTGAGCTATCACAGTTTGTGGTCA
ATAGTCTAGTAAGTGTATCGATCGGATCGTGCCTGCTGTTTCATCCAGCG
CCGTGTCTTCGTCTCGCAGTGGTCCACGGGAGGAGAGGGTGTTGGCCTCT
GGGAGGGCCAATTTTGGATCCGAAATGAAGGTTTTCAAGCTTTATATTTC
GCAATATATTTTGGTGTTTGCGAACCGTAACATAGCTCTTCTGGGGGTCC
TTAAGTGAGGCGTCGTCGGGGTTGCTGGAAATTGTTTTCGTTCGTTTGAT
GAGATGGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12203:2833..5143-

>mRNA_Ecto-sp13_S_contig12203.1857.1 ID=mRNA_Ecto-sp13_S_contig12203.1857.1|Name=mRNA_Ecto-sp13_S_contig12203.1857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12203:2833..5143- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTGCTTCGAGAAACACCAAGAGCATCTACTTCCAGAAAATGCCAA
GTTCTGCCAAGCGCTGAGAGACCAGTATGACGGCTACGACTACCGGCACC
TGATGAACTCGACGTTCGGGCTAGTACCAGCTGGACGCGGTCCTGCCACG
TACCGACTCGGGGAAGTGATGAGCGCCGGGTCGATCCCCGTATTCGTTGG
TCGGGACCTAGTTCCTCCATTCATGGAACAAATCGACTGGCCTTCGATAT
CTTTCGCGTTTACGCCGGACGAAGTGGAGTCGCGCATGATGAGTACGTTG
CTGGCGGTTCCACGAGCGCAGCTAGAGGAAATGCAGCGCAAGTCGCTCGA
GGCGTATGGGAGGATGTTCGGGGCGGACGTGAACGACTTCCGTCCAAGCG
CTAAAATCATACTTGGAATTCTTCGCAGGCGGCTAGGACTCCGGCGGAAG
CGATGA
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