mRNA_Ecto-sp13_S_contig12203.1856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12203.1856.1
Unique NamemRNA_Ecto-sp13_S_contig12203.1856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12203.1856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12203contigEcto-sp13_S_contig12203:2211..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size617
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.7907627-UTR-Ecto-sp13_S_contig12203:2210..25141681462648.7907627-UTR-Ecto-sp13_S_contig12203:2210..2514Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12203 2211..2514 +
1681462648.8110135-UTR-Ecto-sp13_S_contig12203:2823..28271681462648.8110135-UTR-Ecto-sp13_S_contig12203:2823..2827Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12203 2824..2827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.8016999-CDS-Ecto-sp13_S_contig12203:2514..28231681462648.8016999-CDS-Ecto-sp13_S_contig12203:2514..2823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12203 2515..2823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12203.1856.1prot_Ecto-sp13_S_contig12203.1856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12203 2515..2823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12203.1856.1

>prot_Ecto-sp13_S_contig12203.1856.1 ID=prot_Ecto-sp13_S_contig12203.1856.1|Name=mRNA_Ecto-sp13_S_contig12203.1856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MFASGYKKVQRTTKFEDEDNSKQQKKIKNCGIKTILMSISKQCHPYAEHP
RTILLQHTRDFRTQNHSKTATSPVLEKTPNEPLTSTLKCDAVSRSHIQSH
YK*
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mRNA from alignment at Ecto-sp13_S_contig12203:2211..2827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12203.1856.1 ID=mRNA_Ecto-sp13_S_contig12203.1856.1|Name=mRNA_Ecto-sp13_S_contig12203.1856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12203:2211..2827+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGACGGCACCTATGTCATCAATGTCCACAACAGTAGCCCCCTCCCCTG
TGATACTGTTTCCAGAACTCATGGTGAAGGTCAAATAATCCTAACCCTAC
GGCAGTACACCCGCACTACAAAGTAGGCGCCCAACGGAAATCATACCTAC
CAAGCTGTAATGCTCTGCCCCGGGACAGGATATCCGTGCTCTTACTTTCC
CGCTACCATGGTTACACATGTACAGGTGGTTGAACGGACAGCTGCATCAC
GAAATATAAGTAAACAAGGAGAGGTGAATCGAGACCACCGCCAGCATCAG
GCCTATGTTTGCCTCGGGGTACAAAAAAGTACAACGTACAACAAAATTTG
AAGATGAAGATAACTCGAAACAACAAAAAAAAATCAAGAACTGTGGTATC
AAGACAATACTCATGAGTATAAGCAAACAGTGTCACCCTTACGCAGAGCA
CCCCCGCACAATCCTATTACAGCACACCAGGGATTTCAGGACACAAAATC
ACTCAAAAACAGCAACAAGTCCGGTACTAGAGAAGACGCCCAATGAACCC
CTAACGTCCACACTGAAGTGCGACGCAGTGTCGAGGAGTCACATACAAAG
TCACTACAAGTAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12203:2211..2827+

>mRNA_Ecto-sp13_S_contig12203.1856.1 ID=mRNA_Ecto-sp13_S_contig12203.1856.1|Name=mRNA_Ecto-sp13_S_contig12203.1856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12203:2211..2827+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGCCTCGGGGTACAAAAAAGTACAACGTACAACAAAATTTGAAGA
TGAAGATAACTCGAAACAACAAAAAAAAATCAAGAACTGTGGTATCAAGA
CAATACTCATGAGTATAAGCAAACAGTGTCACCCTTACGCAGAGCACCCC
CGCACAATCCTATTACAGCACACCAGGGATTTCAGGACACAAAATCACTC
AAAAACAGCAACAAGTCCGGTACTAGAGAAGACGCCCAATGAACCCCTAA
CGTCCACACTGAAGTGCGACGCAGTGTCGAGGAGTCACATACAAAGTCAC
TACAAGTAG
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