mRNA_Ecto-sp13_S_contig73832.18560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: A0A6H5KTB8_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB8_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.220e-33 Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1
Query: 1 QEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPELDDHYAYRLGK 186
+EWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKD PKRFAPLPPELDDHYAY+LGK
Sbjct: 1213 KEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDLPKRFAPLPPELDDHYAYKLGK 1274
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: K8YWH0_NANGC (DUF547 domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWH0_NANGC) HSP 1 Score: 69.7 bits (169), Expect = 1.890e-12 Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 QEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPELDDHYAYRLGK 186
++W + F VSYE+G DVFSL ELEHCVLRG L RP + P+ PP DDHY Y L K
Sbjct: 100 KDWSAFFTNVSYEMGNDVFSLTELEHCVLRGHLARP--RSVPRHMPSPPPLDDDHYLYALSK 159
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: W7U430_9STRA (DUF547 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U430_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.050e-12 Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 QEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPELDDHYAYRLGK 186
++W + F VSYE+G DVFSL ELEHCVLRG L RP + P+ PP DDHY Y L K
Sbjct: 1335 KDWSAFFTNVSYEMGNDVFSLTELEHCVLRGHLARP--RSVPRHMPSPPPLDDDHYLYALSK 1394
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: A0A7S3HR51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR51_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 9.280e-7 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 4 EWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPELDDHYAYRL 180
+W + F SYE GD+FSL ELEHC+LRG + RPS+ + F L P ++ +A ++
Sbjct: 5 KWSNFFRFCSYEAFGDIFSLAELEHCILRGAMSRPSINFLAQHF--LIPNVEYSFALQI 61
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: B7FYB5_PHATC (tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB5_PHATC) HSP 1 Score: 50.4 bits (119), Expect = 1.270e-5 Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 4 EWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPELDDHYAYRLGK 186
+W F ++YEVG DVFSL ELEHC++R K+ PS F RF LP YA+ L K
Sbjct: 867 KWIGYFNNIAYEVGDDVFSLTELEHCIIRSKMAYPS--QFISRFV-LP---KSQYAFALTK 921
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: A0A1Z5JJS4_FISSO (PH domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJS4_FISSO) HSP 1 Score: 49.3 bits (116), Expect = 3.240e-5 Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query: 7 WPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFA 138
W + F V+Y+VG D+FSL ELEHC++R K+ PS F RFA
Sbjct: 814 WINYFNNVAYQVGDDIFSLTELEHCIIRAKMSAPS--QFLSRFA 855
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Match: A0A7S2SG73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SG73_9STRA) HSP 1 Score: 48.9 bits (115), Expect = 3.530e-5 Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 QEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPELDDHYAYRL 180
+EW + A VSYE+ G+VFSL E+E C+LRG+L P + PK + + D+ A+ +
Sbjct: 42 KEWATAHATVSYELLGNVFSLAEMEQCILRGRLSPP--RTVPKHYPRVASRQDERIAFAV 99 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73832.18560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig73832.18560.1 >prot_Ecto-sp13_S_contig73832.18560.1 ID=prot_Ecto-sp13_S_contig73832.18560.1|Name=mRNA_Ecto-sp13_S_contig73832.18560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp QEWPSRFAEVSYEVGGDVFSLQELEHCVLRGKLPRPSLKDFPKRFAPLPPback to top mRNA from alignment at Ecto-sp13_S_contig73832:38..223+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig73832.18560.1 ID=mRNA_Ecto-sp13_S_contig73832.18560.1|Name=mRNA_Ecto-sp13_S_contig73832.18560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73832:38..223+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73832:38..223+ >mRNA_Ecto-sp13_S_contig73832.18560.1 ID=mRNA_Ecto-sp13_S_contig73832.18560.1|Name=mRNA_Ecto-sp13_S_contig73832.18560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73832:38..223+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |