mRNA_Ecto-sp13_S_contig7383.18559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7383.18559.1
Unique NamemRNA_Ecto-sp13_S_contig7383.18559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A6H5KCH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH3_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 8.900e-47
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND 230
            FDEMPCIWLKPSRKEDADGSAG LYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND
Sbjct:  425 FDEMPCIWLKPSRKEDADGSAGNLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND 500
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: D7FN30_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN30_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 6.320e-46
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND 230
            FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND
Sbjct: 4114 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND 4189
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A7S3HSU4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSU4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.770e-28
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND 230
             D MPCIWLKP     AD     +Y+CPLYKTS+RAGTLSTTGHSTNFV  L IP+  ++DHWIRRGCAMLCM N+
Sbjct:  147 LDVMPCIWLKPVIT--ADYHPTSVYDCPLYKTSIRAGTLSTTGHSTNFVVALPIPTETTQDHWIRRGCAMLCMTNE 220
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A7S2FAY2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAY2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.180e-28
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLN 227
            FD MPC+WLKP  KED     G +Y CP+YKTS+RAGTLSTTGHSTNFV  + IPS K  DHWIRRGCAMLCML+
Sbjct:  337 FDVMPCLWLKPMVKEDY--KPGPVYVCPVYKTSIRAGTLSTTGHSTNFVCYMDIPSLKEMDHWIRRGCAMLCMLD 409
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: H3G7F9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7F9_PHYRM)

HSP 1 Score: 116 bits (290), Expect = 7.340e-28
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLN 227
            FD MP IWLKP R+E+   S   +Y CPLYKTS+RAGTLSTTGHSTNFV  L +P+ KS DHWIRRGCAMLCML+
Sbjct: 2826 FDRMPVIWLKPMRREEYKPS--DVYECPLYKTSIRAGTLSTTGHSTNFVVALDVPTDKSPDHWIRRGCAMLCMLD 2898
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A0P1A822_PLAHL (Dynein heavy chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A822_PLAHL)

HSP 1 Score: 115 bits (289), Expect = 1.010e-27
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLN 227
            FD MP IWLKP R+E+   +   +Y CPLYKTS+RAGTLSTTGHSTNFV  L +P+ KS DHWIRRGCAMLCML+
Sbjct: 3953 FDRMPVIWLKPMRREEYQPT--DVYECPLYKTSIRAGTLSTTGHSTNFVVSLNVPTDKSPDHWIRRGCAMLCMLD 4025
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A0W8D9V4_PHYNI (Dynein heavy chain 6 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D9V4_PHYNI)

HSP 1 Score: 115 bits (287), Expect = 1.840e-27
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLN 227
            FD MP IWLKP R+E+   +   +Y CPLYKTS+RAGTLSTTGHSTNFV  L +P+ KS DHWIRRGCAMLCML+
Sbjct: 1594 FDRMPVIWLKPMRREEYKPT--DVYECPLYKTSIRAGTLSTTGHSTNFVVALDVPTDKSPDHWIRRGCAMLCMLD 1666
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: K3WBQ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBQ8_GLOUD)

HSP 1 Score: 114 bits (286), Expect = 2.440e-27
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLN 227
            FD MP IWLKP RKE        +Y CPLYKTS+RAGTLSTTGHSTNFV  L IP+ KS DHWIRRGCAMLCML+
Sbjct:  880 FDRMPVIWLKPMRKEGY--KPVDVYECPLYKTSIRAGTLSTTGHSTNFVVALDIPTDKSPDHWIRRGCAMLCMLD 952
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A5D6XHL3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHL3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.480e-27
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLN 227
            FD MP IWLKP R+E+       +Y CPLYKTS+RAGTLSTTGHSTNFV  L IP+ K  DHWIRRGCAMLCML+
Sbjct: 3617 FDRMPVIWLKPMRREEY--KPADVYECPLYKTSIRAGTLSTTGHSTNFVVSLDIPTDKDPDHWIRRGCAMLCMLD 3689
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BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Match: A0A812PC02_SYMMI (DNAH6 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PC02_SYMMI)

HSP 1 Score: 114 bits (284), Expect = 4.690e-27
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 3 
Query:    3 FDEMPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLTIPSGKSEDHWIRRGCAMLCMLND 230
            FD MPC+WL+P   E+   +   +YNCPLYKTSLRAGTLSTTGHSTNFV  L +P+   EDHWIRRGCAMLCML++
Sbjct: 1898 FDMMPCVWLQPVITENYHPT--NVYNCPLYKTSLRAGTLSTTGHSTNFVVSLPVPTALDEDHWIRRGCAMLCMLDE 1971
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7383.18559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCH3_9PHAE8.900e-4798.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN30_ECTSI6.320e-46100.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3HSU4_9STRA6.770e-2867.11Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2FAY2_9STRA7.180e-2870.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
H3G7F9_PHYRM7.340e-2870.67Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0P1A822_PLAHL1.010e-2769.33Dynein heavy chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A0W8D9V4_PHYNI1.840e-2769.33Dynein heavy chain 6 n=1 Tax=Phytophthora nicotian... [more]
K3WBQ8_GLOUD2.440e-2772.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XHL3_9STRA3.480e-2769.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A812PC02_SYMMI4.690e-2767.11DNAH6 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7383contigEcto-sp13_S_contig7383:6491..7184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score161.0
Seed ortholog evalue2.1e-37
Seed eggNOG ortholog2880.D7FN30
Model size341
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size222
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.0638797-UTR-Ecto-sp13_S_contig7383:6490..65981681464007.0638797-UTR-Ecto-sp13_S_contig7383:6490..6598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7383 6491..6598 -
1681464007.1061604-UTR-Ecto-sp13_S_contig7383:7173..71841681464007.1061604-UTR-Ecto-sp13_S_contig7383:7173..7184Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7383 7174..7184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.077936-CDS-Ecto-sp13_S_contig7383:6598..67241681464007.077936-CDS-Ecto-sp13_S_contig7383:6598..6724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7383 6599..6724 -
1681464007.0931723-CDS-Ecto-sp13_S_contig7383:7077..71731681464007.0931723-CDS-Ecto-sp13_S_contig7383:7077..7173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7383 7078..7173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7383.18559.1prot_Ecto-sp13_S_contig7383.18559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7383 6599..7173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7383.18559.1

>prot_Ecto-sp13_S_contig7383.18559.1 ID=prot_Ecto-sp13_S_contig7383.18559.1|Name=mRNA_Ecto-sp13_S_contig7383.18559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MPCIWLKPSRKEDADGSAGKLYNCPLYKTSLRAGTLSTTGHSTNFVAPLT
IPSGKSEDHWIRRGCAMLCMLND*
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mRNA from alignment at Ecto-sp13_S_contig7383:6491..7184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7383.18559.1 ID=mRNA_Ecto-sp13_S_contig7383.18559.1|Name=mRNA_Ecto-sp13_S_contig7383.18559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7383:6491..7184- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTCGACGAGATGCCGTGCATCTGGCTCAAGCCATCAAGGAAAGAAGAC
GCTGACGGAAGCGCGGGCAAGTTATACAACTGCCCTCTCTACAAAACGTC
CTTAAGGGTGAGCGCGGCGCAAAAGGAGCTTGGAATTTGACACCTGTCTC
GTAATACGAAACTTGCTAGTCCGAACTATGGGTATTCAGAACGCAGAAAG
ATTGCAAATGCAAAACGAGAAAGCGCGTTGCGTAGACCGGTGTTTGTGTG
ACGCGGTTTCTATTATTGATGGGTTACGTGCATACGGCCATGTCTTGATT
TCGCCTGGTGGGTTCTACCGAGATCCACCGTTCTTTGTGCCTATTTCGGT
GCTTCGACAGAGATCGTGGGTCGGTTGTTCTTGTCTATGTGTCTACCAAC
GACATATTGGTGCGTTGAATACATAGTACCAACCGAGACCGCAAACATTT
GCTTCACCAGGCCGGGACTCTGTCCACAACGGGGCACTCTACCAACTTCG
TGGCACCACTTACCATCCCGAGCGGCAAGTCGGAAGACCATTGGATTCGA
CGAGGTTGCGCCATGCTCTGCATGCTGAACGACTAGACCGGCTCGAAGTA
AAGGACACGAGCTGCTGAACATGATCTTGCATTTGAAACGAGCTGCGATC
AGTGTTTATGTCCAGGAACTCGGAATATGCTCAGCGTGACGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7383:6491..7184-

>mRNA_Ecto-sp13_S_contig7383.18559.1 ID=mRNA_Ecto-sp13_S_contig7383.18559.1|Name=mRNA_Ecto-sp13_S_contig7383.18559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7383:6491..7184- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGCATCTGGCTCAAGCCATCAAGGAAAGAAGACGCTGACGGAAG
CGCGGGCAAGTTATACAACTGCCCTCTCTACAAAACGTCCTTAAGGGCCG
GGACTCTGTCCACAACGGGGCACTCTACCAACTTCGTGGCACCACTTACC
ATCCCGAGCGGCAAGTCGGAAGACCATTGGATTCGACGAGGTTGCGCCAT
GCTCTGCATGCTGAACGACTAG
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