mRNA_Ecto-sp13_S_contig73801.18556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73801.18556.1
Unique NamemRNA_Ecto-sp13_S_contig73801.18556.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 9.810e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 AIDEKVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERSQA 129
            AI EKV GPDHP +AT LNN A LL++QGKY EAEPLYERSQA
Sbjct:   84 AIKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYERSQA 126          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: UPI000C46EE86 (tetratricopeptide repeat protein n=1 Tax=Limnothrix sp. PR1529 TaxID=1704291 RepID=UPI000C46EE86)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   13 KVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERSQAIR 135
            K Y PDHPE+AT LNN A L +SQG+YE AEPLY RS A R
Sbjct:    5 KCYEPDHPEIATSLNNLAELYESQGRYEAAEPLYRRSLATR 45          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.340e-8
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 AIDEKVYGPDHPEVATDLNNWAALLDSQ---------------GKYEEAEPLYERSQAIR 135
            +I +K +GPDHPE+AT LNNWA LL SQ               GKY+ AEPLY RS AIR
Sbjct:  353 SILKKTHGPDHPEIATGLNNWAGLLSSQHHEANFSLAFRVPCQGKYDAAEPLYVRSLAIR 412          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.090e-8
Identity = 33/67 (49.25%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 AIDEKVYGPDHPEVATDLNNWAALLDS-----------------------QGKYEEAEPLYERSQAI 132
            AIDEKVYGPDHP+VAT LNNW  LL                         QGKY++A PLY+RS AI
Sbjct:  366 AIDEKVYGPDHPDVATALNNWVRLLSICSSALKYLLALTTLLPVVPFLIFQGKYDQAGPLYDRSLAI 432          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.130e-8
Identity = 35/72 (48.61%), Postives = 37/72 (51.39%), Query Frame = 1
Query:    1 AIDEKVYGPDHPEVATDLNNWAALL----------------------------DSQGKYEEAEPLYERSQAI 132
            AIDEKVYGPDHPEVATDLNNWAAL                             D+Q K+EEA  LY RS  I
Sbjct:  130 AIDEKVYGPDHPEVATDLNNWAALYEVQAIREKTIGAEHLDLVDVIIRRARVCDNQAKHEEARRLYGRSLEI 201          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A355B128_9BACT (Pilus assembly protein PilF (Fragment) n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A355B128_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.710e-8
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   10 EKVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERSQAI 132
            EK  GP+HP+VAT LNN A++L +QG ++EAEPLY+R+ +I
Sbjct:    1 EKALGPEHPDVATGLNNLASVLQAQGLFKEAEPLYKRTLSI 41          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A7S3NNH9_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNH9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.810e-8
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    4 IDEKVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERS 123
            I EK  GP+HP++AT LNN A LL++QGKY+EA+ LYER+
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERA 41          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: A0A7S3K3F8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3F8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.810e-8
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    4 IDEKVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERS 123
            I EK  GP+HP++AT LNN A LL++QGKY+EA+ LYER+
Sbjct:    2 IGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYERA 41          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: UPI00037296AD (tetratricopeptide repeat protein n=1 Tax=Desulfobacter curvatus TaxID=2290 RepID=UPI00037296AD)

HSP 1 Score: 58.9 bits (141), Expect = 7.870e-8
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   10 EKVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERSQAI 132
            EK  GPDHP+VAT L+N + L  SQGKYEEAEPLY+RS  I
Sbjct:  508 EKANGPDHPDVATILDNLSELYKSQGKYEEAEPLYQRSLKI 548          
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Match: UPI001BE10FAB (tetratricopeptide repeat protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001BE10FAB)

HSP 1 Score: 54.3 bits (129), Expect = 1.290e-7
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   22 GPDHPEVATDLNNWAALLDSQGKYEEAEPLYERSQAI 132
            GPDHP+VAT LNN A L  SQG+Y +AEPL++RS AI
Sbjct:    3 GPDHPDVATSLNNLAELYRSQGQYAQAEPLFKRSLAI 39          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73801.18556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0C4_9PHAE9.810e-1276.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C46EE861.050e-868.29tetratricopeptide repeat protein n=1 Tax=Limnothri... [more]
A0A6H5J9V8_9PHAE2.340e-853.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE3.090e-849.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LI51_9PHAE5.130e-848.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A355B128_9BACT5.710e-858.54Pilus assembly protein PilF (Fragment) n=1 Tax=Nit... [more]
A0A7S3NNH9_9STRA6.810e-862.50Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3K3F8_9STRA6.810e-862.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI00037296AD7.870e-868.29tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
UPI001BE10FAB1.290e-767.57tetratricopeptide repeat protein n=1 Tax=Klebsiell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73801contigEcto-sp13_S_contig73801:1..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.2
Seed ortholog evalue9e-08
Seed eggNOG ortholog2880.D7G180
Model size330
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size330
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464006.924099-CDS-Ecto-sp13_S_contig73801:0..841681464006.924099-CDS-Ecto-sp13_S_contig73801:0..84Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73801 1..84 +
1681464006.9365637-CDS-Ecto-sp13_S_contig73801:195..3301681464006.9365637-CDS-Ecto-sp13_S_contig73801:195..330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73801 196..330 +
1681464006.949385-CDS-Ecto-sp13_S_contig73801:391..5021681464006.949385-CDS-Ecto-sp13_S_contig73801:391..502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73801 392..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73801.18556.1prot_Ecto-sp13_S_contig73801.18556.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73801 1..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73801.18556.1

>prot_Ecto-sp13_S_contig73801.18556.1 ID=prot_Ecto-sp13_S_contig73801.18556.1|Name=mRNA_Ecto-sp13_S_contig73801.18556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
AIDEKVYGPDHPEVATDLNNWAALLDSQGKYEEAEPLYERSQAIREKVLG
PEHPAVATVLNNRAGFLSNCPSAYDEADSLYQRALGIDEKVLGPDHPDVA
KDLNSRAGLL
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mRNA from alignment at Ecto-sp13_S_contig73801:1..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73801.18556.1 ID=mRNA_Ecto-sp13_S_contig73801.18556.1|Name=mRNA_Ecto-sp13_S_contig73801.18556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=502bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73801:1..502+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTATCGACGAGAAAGTGTACGGTCCTGATCACCCGGAGGTCGCAACAGA CCTCAACAACTGGGCGGCGTTGTTGGACAGTCAGGTGAGAGCAAAATGAC GCTTCTAGATGGTTCTAGAAAAGAATGTACGTCCGCAATTCTAGATCCCA CTTGCACCAAAACCCGACCCTGTCACGCTGTCAACTGTAAGTCAGGGGAA GTATGAGGAAGCCGAGCCGCTATATGAGCGGTCACAAGCCATACGAGAGA AGGTCCTGGGTCCGGAACACCCCGCCGTCGCAACTGTGCTCAACAACCGG GCGGGGTTTTTGAGCAATTGTCCCTCCGCAGTAACTCTTCTAATAATAAC CACTCCTACCGTCCCACTCGTCCCTCTTGTGTCAGGGCAAGTACGACGAA GCTGATTCGTTGTACCAACGGGCCCTTGGGATAGACGAGAAGGTGCTGGG TCCGGATCACCCCGACGTGGCTAAAGATCTCAACAGCCGGGCGGGGTTGT TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73801:1..502+

>mRNA_Ecto-sp13_S_contig73801.18556.1 ID=mRNA_Ecto-sp13_S_contig73801.18556.1|Name=mRNA_Ecto-sp13_S_contig73801.18556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73801:1..502+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTATCGACGAGAAAGTGTACGGTCCTGATCACCCGGAGGTCGCAACAGA
CCTCAACAACTGGGCGGCGTTGTTGGACAGTCAGGGGAAGTATGAGGAAG
CCGAGCCGCTATATGAGCGGTCACAAGCCATACGAGAGAAGGTCCTGGGT
CCGGAACACCCCGCCGTCGCAACTGTGCTCAACAACCGGGCGGGGTTTTT
GAGCAATTGTCCCTCCGCATACGACGAAGCTGATTCGTTGTACCAACGGG
CCCTTGGGATAGACGAGAAGGTGCTGGGTCCGGATCACCCCGACGTGGCT
AAAGATCTCAACAGCCGGGCGGGGTTGTTG
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