mRNA_Ecto-sp13_S_contig7376.18547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7376.18547.1
Unique NamemRNA_Ecto-sp13_S_contig7376.18547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7376.18547.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.190e-88
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 3 
Query:    3 MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFKHFRSMDDAVLEVTSAVLGQDGVCLPGREPNPDLIETLPLDRRPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREEARERWLATGEVA 464
            MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGF+HFRSMDDAVLEVTSAVLGQDG CLPGREPNPDLIETLPLD RPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLRE ARERWLATGEVA
Sbjct: 4127 MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFQHFRSMDDAVLEVTSAVLGQDGACLPGREPNPDLIETLPLDSRPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREGARERWLATGEVA 4280
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BLAST of mRNA_Ecto-sp13_S_contig7376.18547.1 vs. uniprot
Match: A0A6H5KKL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL5_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.250e-87
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 3 
Query:    3 MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFKHFRSMDDAVLEVTSAVLGQDGVCLPGREPNPDLIETLPLDRRPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREEARERWLATGEVA 464
            MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGF+HFRSMDDAVLEVTSAVLGQDG CLPGREPNPDLIETLPLD RPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLRE ARERWLAT EVA
Sbjct: 2077 MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFQHFRSMDDAVLEVTSAVLGQDGACLPGREPNPDLIETLPLDSRPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREGARERWLATEEVA 2230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7376.18547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUD9_ECTSI1.190e-8897.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKL5_9PHAE1.250e-8796.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7376contigEcto-sp13_S_contig7376:957..3285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1462
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464005.8210204-UTR-Ecto-sp13_S_contig7376:956..9581681464005.8210204-UTR-Ecto-sp13_S_contig7376:956..958Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7376 957..958 +
1681464006.0161095-UTR-Ecto-sp13_S_contig7376:2290..32851681464006.0161095-UTR-Ecto-sp13_S_contig7376:2290..3285Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7376 2291..3285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464005.8493783-CDS-Ecto-sp13_S_contig7376:958..11371681464005.8493783-CDS-Ecto-sp13_S_contig7376:958..1137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7376 959..1137 +
1681464005.9584057-CDS-Ecto-sp13_S_contig7376:2004..22901681464005.9584057-CDS-Ecto-sp13_S_contig7376:2004..2290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7376 2005..2290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7376.18547.1prot_Ecto-sp13_S_contig7376.18547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7376 959..2290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7376.18547.1

>prot_Ecto-sp13_S_contig7376.18547.1 ID=prot_Ecto-sp13_S_contig7376.18547.1|Name=mRNA_Ecto-sp13_S_contig7376.18547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MEGIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLL
HLFEGFKHFRSMDDAVLEVTSAVLGQDGVCLPGREPNPDLIETLPLDRRP
EDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREEARERWLAT
GEVA*
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mRNA from alignment at Ecto-sp13_S_contig7376:957..3285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7376.18547.1 ID=mRNA_Ecto-sp13_S_contig7376.18547.1|Name=mRNA_Ecto-sp13_S_contig7376.18547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7376:957..3285+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATGGAGGGTATCCCCAAGCCGGATAGGGATGCTCTCGACTCGGCCCGG
TGGATGGCCTACGATGCTGCGAACGAGTACCTGGCGGAACGGCGGTCGAA
GAGGGCGCCGAGGAGGCCGCAGGACCCCCCCGCCCCCAGCGGAAAGTTAC
TGCACCTCTTTGAAGGCTTCAAGCACTTCCGGTTAGTTTTTTTTTCGTTC
TAGTTTTCTAGCTAGGCTCTTGTCATGGCATTACAAGCTGGTTGACGTTG
TTTCGGTCGTGCTTGATGTTGGTACAGCAGTATGCTTTTCTCCGTCAGTC
GAAGTCGATGATTGCCGGTGTTGCTTGTGTTGACGATGGTGGCCCATGGT
GCTGTTGACGTCCTCGTCTAGAGCACCGCTCAGATGCCAATGTTGATCTT
GTGTTGAAATACCTACAGTACGCCAAGAGTACCCTGATTTTTGCCCCTGT
CGTGTTGCTTTTGTGCACCGTCGCTCGCACCTTTTACCCGCTACGCCATC
TCGAACATTCGTGTTATTCTCTGTAAGAATATTTTCAACGCCCTCCCCTC
TCCTACGAGACCTAAGATACAAGTATGACAACATTTTGGTTGTACGTAAA
ACCTTCAGTTGTACATGAAGCACCTTCCGTTGACGCCCAACATGTTCGAG
GCGTCCGGTTGATTTGTAGACAAAGACCGGTGCATCGTCTCGAGGAACGT
GTGTTCCCAGCGATTGACGGCCGCAACCCGCAAGCGCCGAATTAAAAACA
AAATGCGTTATCACTGAAGAACCTGGGAGTTGGAAAAACGTCAGACTAAG
AATGGGCGGGAAAACCAGAAAGGTGGCCACAAGATTTAGTGCTCCATCGA
AGAAACCTAAGTTTCTCACAGAACGAATGCAATTCTACCCTATGGATACA
ACTTGATGCAAGGGTCCTCACGTGGTGGTGCCTTCAGAAGCACTAAATGC
TAAATCCTCCGTTCTCTCGAGGACGCGTGGTCAATGGTCCAACACTTGGC
ATGCGAAACATGAGTACGCCCCCCTTTTCCCCGTGCCATATATATTAGGT
CGATGGATGACGCGGTCCTAGAGGTAACCTCGGCTGTGCTGGGGCAAGAC
GGGGTCTGCTTGCCCGGGCGGGAGCCAAACCCGGACCTAATCGAGACGCT
GCCGTTGGACAGACGTCCGGAGGACTGGCTCTTCCACGAGGACGACCTGT
ACTACGTAAAGTGCAGGGTGGCCGAGGGCATCTTGGAGGAGCTAGTGGAA
GACACCGTGCAGGAGTGCAAGCGGGTTTACTCGTTGAGGGAGGAGGCCAG
GGAGCGGTGGCTGGCCACGGGAGAGGTGGCATGAGTGATTAGGTCAGGCT
ACCTCGAGACGGTATCTGATTGGGTGGGATGATCCCACTGCAGGTTGGGT
AGAACAACCGTCCTTTTAACTGCGCGCGCCCCTGATCAGGATAACGAAAG
AGATTTCTTCACACGGATGGTTGCTAAGTTTGGCCGGTAGGCCTCGGACC
AACGCTTGGCGGTTTTTGGCTGAGAGATGAATAAGTAGGTCAAATTTGTG
ATGTGCTTGTTATTGCATGTCGTGTTTAATTTGTTATGTGTTCTGTTTGC
CCTGAAGTGTGACGAAGTCGAGGACGACACCAGTCTCGGAACACTCATGC
ATGCGAGGCACCACAGGCTTTGGATGGGTAGGGTGGTTTGGACGATTATT
TTGTGTTGGACTGTAGGACAGCAGTGGAACAAGAGTCTTTGAAAGGATGA
TGGCTTCGGGTCTTTGCAGTGTGACTTTCTCTCTCTCTTTCTCTCTCTCT
CGCTCTCAGGCGACTCGGTAACTTGTTTTATTGTGTCTGATCCCAGATAT
TCCTGTTTAATATGTCCCGCTGGTTTGGCTGAACGGGGGTTCAGTTGGGA
ACGTCATGAAAGCCTCGCTGAATGAGGGTCCTTAAGTGCGATGAAATTGT
TTTCCAAGTTTGAGGGCGTTAATAAAAGCAGTTTGGAAGTTGTAAAAGAA
ACACCCGTCGGTTCGTCTCGAAAAATATTCCTCTTTTGGGGGGATTTCTG
TTTGTTTTATGTTTTGGCCGTCAAAAAGAGTCTTACAACGTCGTGTTTAT
TTAATTCTTTTCCCTCTACTAGTGTTTGGCCGTGTCGGGTGTCCTTTCGA
TATTGCTGTATTGTACATACCATCGAAACGATAATTGCTTTCGCCCTCTG
TTTCTTTCACCGTTGCAGCGAGCAGTGCGGCCTTGATTCTGCTACGAGGG
TTGCTGATTCGAGAATCTGCCTGGTGATGTTGTACCGTCCCTGCTAGACC
TGTAACACTATTTTACTTGTTGTACCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7376:957..3285+

>mRNA_Ecto-sp13_S_contig7376.18547.1 ID=mRNA_Ecto-sp13_S_contig7376.18547.1|Name=mRNA_Ecto-sp13_S_contig7376.18547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7376:957..3285+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGTATCCCCAAGCCGGATAGGGATGCTCTCGACTCGGCCCGGTG
GATGGCCTACGATGCTGCGAACGAGTACCTGGCGGAACGGCGGTCGAAGA
GGGCGCCGAGGAGGCCGCAGGACCCCCCCGCCCCCAGCGGAAAGTTACTG
CACCTCTTTGAAGGCTTCAAGCACTTCCGGTCGATGGATGACGCGGTCCT
AGAGGTAACCTCGGCTGTGCTGGGGCAAGACGGGGTCTGCTTGCCCGGGC
GGGAGCCAAACCCGGACCTAATCGAGACGCTGCCGTTGGACAGACGTCCG
GAGGACTGGCTCTTCCACGAGGACGACCTGTACTACGTAAAGTGCAGGGT
GGCCGAGGGCATCTTGGAGGAGCTAGTGGAAGACACCGTGCAGGAGTGCA
AGCGGGTTTACTCGTTGAGGGAGGAGGCCAGGGAGCGGTGGCTGGCCACG
GGAGAGGTGGCATGA
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