prot_Ecto-sp13_S_contig7374.18546.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7374.18546.1
Unique Nameprot_Ecto-sp13_S_contig7374.18546.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length242
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 389 bits (1000), Expect = 3.920e-135
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0 
Query:   35 KGGDLTMRRGLSYKGKNGPGLTNVGRVVSTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEIGYDDXXXXXXXADLF 241
            +GG LTMRRGLSYKGKNGPGLTN+GRVV+TRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEIGYDDXXXXXXXADLF
Sbjct:   56 QGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEIGYDDXXXXXXXADLF 262
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: W7TTT9_9STRA (Rnp-1 like rna-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.050e-14
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 0 
Query:   57 NVGRVVSTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAI 152
            ++G + S R+ +     P ++M+SNL +  +  ++  F S AG V  VK++       SKGYGFV F +PL+AT A+E L+G EL GR ++++PAI
Sbjct:   48 SIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAI 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: A0A7S2V4S3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-10
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0 
Query:   65 RKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPA 151
            RK V  +   CKV +SN  Y+ TE ++ E+CS AG V  VK++K  + K S+GYG+V++     AT AI  LN  +L GR V +  A
Sbjct:   73 RKNVFNA---CKVHVSNFPYTTTEEELREWCSQAGEVFAVKIIKNQWTKKSQGYGYVEYTISPYATAAINFLNETQLGGRTVYIAEA 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: B8LC97_THAPS (RNA binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC97_THAPS)

HSP 1 Score: 64.3 bits (155), Expect = 1.220e-9
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 0 
Query:   73 EPCKVMISNLDYSLTENDVAEFCSTA-GAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLN---GKELKGRVVEL 148
            +P KV I NL +  TE DV +  +T  G +  VK+V+ W +  SKGYGF+ F +P+ AT A++++N   G  +KGR + L
Sbjct:   13 DPNKVFIGNLPFDATEEDVNQLFATHWGRIESVKIVRDWKSGKSKGYGFIQFYEPMVATSAMKSVNEGKGLRIKGRPIRL 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: UPI0019E9B91D (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E9B91D)

HSP 1 Score: 63.5 bits (153), Expect = 1.730e-9
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   77 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKR 158
            + + NL Y +TE D+ +     G V  + ++K  Y+  SKG+GFV+      A  AIE LNGKELKGR++++  A    E R
Sbjct:    3 IYVGNLSYEVTEEDLKQAFGAFGQVESINIIKDKYSGESKGFGFVEMPAKAEAQSAIEGLNGKELKGRMLKVSEARPRSESR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: A0A3N5SIC5_9SPIR (RNA-binding protein n=2 Tax=Bacteria TaxID=2 RepID=A0A3N5SIC5_9SPIR)

HSP 1 Score: 63.2 bits (152), Expect = 2.070e-9
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 0 
Query:   77 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRR 159
            + + NL YS+TE+D+ +     G VA V ++K  ++  SKG+GFV+      A  AI  +NGKELKGR + +  A    + RR
Sbjct:    3 IYVGNLSYSVTEDDLKQAFEAFGQVASVSIIKDKFSNQSKGFGFVEMPTQEEAQAAISGMNGKELKGRAMNVNEARPRTDDRR 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: A0A661LRS4_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661LRS4_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 2.130e-9
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   77 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKR 158
            + + NL Y +TE D+ +    +G V  V+++   Y+  SKG+GFV+      A  AI+ LNGKELKGRV+ L  A    E R
Sbjct:    3 IYVGNLSYEVTEEDLRQAFEQSGQVESVRIIMDKYSGRSKGFGFVEMPSNHEAQAAIKGLNGKELKGRVLNLNEARPRTENR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: A0A8J6P332_9DELT (RNA-binding protein n=1 Tax=Candidatus Desulfatibia vada TaxID=2841696 RepID=A0A8J6P332_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 2.250e-9
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 0 
Query:   77 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRR 159
            + + NL Y +TE D+ E     G V  VK++K  Y   SKG+GFV+      A  AIE LNGKELKGR + +  A    E RR
Sbjct:    3 IYVGNLSYEVTEEDLKEAFEVFGEVDTVKVIKDNYTGRSKGFGFVEMSVKAEAQSAIEGLNGKELKGRSLNVNEARPRPEGRR 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: UPI00168AE54E (RNA-binding protein n=1 Tax=Treponema zioleckii TaxID=331680 RepID=UPI00168AE54E)

HSP 1 Score: 63.2 bits (152), Expect = 3.350e-9
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   76 KVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAI 152
            K+ I NL +S TE  ++      G VA   ++K  + + SKG+GFV+    ++AT AI +LNGKE+ GR V +  A+
Sbjct:    3 KIYIGNLSFSTTEERLSSIFGEYGEVASATIIKDKFTEMSKGFGFVEMPDDVSATSAISSLNGKEIDGRKVRVNEAV 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Match: A0A448ZIF6_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIF6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.440e-9
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = 0 
Query:   65 RKRVLESEEPCKVMISNLDYSLTENDVAEFC-STAGA----VAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVEL 148
            RK   +  +PCKV + NL + + +ND+A+F   T G     +   K+++ W    SKGYGF++F  P+ AT+ ++  +GK L GR V++
Sbjct:   80 RKGTKKFVDPCKVFVGNLPFDVDKNDLAQFVLDTMGQNRMILHSFKVIEDWKTGKSKGYGFIEFTDPIFATVCMDVCDGKMLNGRPVKI 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7374.18546.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE3.920e-13598.07RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TTT9_9STRA3.050e-1439.58Rnp-1 like rna-binding protein n=2 Tax=Monodopsida... [more]
A0A7S2V4S3_9STRA1.910e-1042.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8LC97_THAPS1.220e-941.25RNA binding protein (Fragment) n=1 Tax=Thalassiosi... [more]
UPI0019E9B91D1.730e-939.02RNA-binding protein n=1 Tax=Proteobacteria bacteri... [more]
A0A3N5SIC5_9SPIR2.070e-938.55RNA-binding protein n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A661LRS4_9DELT2.130e-940.24RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A8J6P332_9DELT2.250e-943.37RNA-binding protein n=1 Tax=Candidatus Desulfatibi... [more]
UPI00168AE54E3.350e-938.96RNA-binding protein n=1 Tax=Treponema zioleckii Ta... [more]
A0A448ZIF6_9STRA3.440e-935.96RRM domain-containing protein n=1 Tax=Pseudo-nitzs... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 76..149
e-value: 1.0E-16
score: 71.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 77..146
e-value: 5.8E-17
score: 61.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 75..153
score: 15.511
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 49..164
e-value: 9.9E-22
score: 79.6
NoneNo IPR availablePANTHERPTHR45735:SF2CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2coord: 75..162
NoneNo IPR availablePANTHERPTHR45735FAMILY NOT NAMEDcoord: 75..162
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 71..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7374contigEcto-sp13_S_contig7374:2393..4247 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7374.18546.1mRNA_Ecto-sp13_S_contig7374.18546.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7374 1257..5467 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7374.18546.1 ID=prot_Ecto-sp13_S_contig7374.18546.1|Name=mRNA_Ecto-sp13_S_contig7374.18546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MDAHPIVVFRPRACRACLRSRQLPVPHRHSYIRPKGGDLTMRRGLSYKGK
NGPGLTNVGRVVSTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGA
VAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKP
AITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVT
VDEFLEIVGRTNSRTAKKQPKYAEEIGYDDDDDDDDDADLF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf