prot_Ecto-sp13_S_contig737.18541.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig737.18541.1
Unique Name	prot_Ecto-sp13_S_contig737.18541.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	278

Homology

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-15
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIPP 72
            M STDREAL+ALFR T G GW ++GNWGTD++LATWDGV+V+GQG + +L          L  N L+GPIPP
Sbjct:    1 MASTDREALIALFRLTCGYGWSRRGNWGTDAELATWDGVQVNGQGRVVKLG---------LAANNLQGPIPP 63

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.530e-15
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIP 71
            M+STDREAL+ALFRSTGGAGW ++ NW TD+ LATWDGV V+ QG +  L+         L  N L+GPIP
Sbjct:   19 MSSTDREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLS---------LIRNNLQGPIP 80

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.730e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIPP 72
            M STDREALV+LFRSTGGAGW ++ NW TD+DLATW+GV V+ QG +          +L L  N L+G IPP
Sbjct:    1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVV---------NLDLQYNNLQGSIPP 63

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.780e-14
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLA------------DLGALQSLHLFNNKLKGPIPP 72
            M STDREALVALFRSTGGAGW Q+GNW TD+ +A W+GV V+ QG + +L+             + AL+SL L  N+L   IPP
Sbjct:    1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIAIWNGVEVNDQGRVVKLSLKLKSLRGPIPPGISALESLSLGYNELDSNIPP 84

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.370e-14
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIPP 72
            M STDREALVALFRSTGGAGW Q+GNW TD+ +ATW GV V+ QG +  L+         L  N L+G IPP
Sbjct:    1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLS---------LGGNSLRGHIPP 63

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-13
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIP 71
            M S DR+ALVALF STGGAGW ++ NW TD+D ATW GV+V+ QG +  + DLG+        N L+GPIP
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDV-DLGS--------NNLQGPIP 62

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.970e-13
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIPP 72
            M STDREAL+ALFRSTGGAGW ++  W TD+ LATWDG  V+ QG +           LHL +N L+G IPP
Sbjct:    1 MASTDREALIALFRSTGGAGWKRRDKWDTDAVLATWDGAEVNDQGRVV---------GLHLSSNNLQGNIPP 63

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-12
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIP 71
            M+STDREAL+ALFRSTGGAGW ++ NW TD+ L TW GV+V+ QG +  L+         L  N L+G IP
Sbjct:    1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLS---------LDQNNLQGHIP 62

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.380e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQLADLGALQSLHLFNNKLKGPIPP 72
            M  TDR+ALVALFRSTGGA W +K NW T +++ATW GV+V+ +G + +L          L +N L+GPIPP
Sbjct:    1 MALTDRDALVALFRSTGGASWDKKDNWDTAAEIATWSGVQVNDEGRVVKL---------RLKSNNLRGPIPP 63

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BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-11
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 0

Query:    1 MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQL---------------ADLGALQSLHLFNNKLKG 68
            M  TDR+ALV L+R+TGG  W ++ NW TD+DL TW GV V+ QG + +L                 LG LQ LHL +NKL G
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLSG 83

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig737.18541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJS7_ECTSI	1.200e-15	58.33	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5L6T0_9PHAE	1.530e-15	57.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQP2_9PHAE	1.730e-14	56.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FX69_ECTSI	1.780e-14	52.38	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FX56_ECTSI	2.370e-14	58.33	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5KQQ0_9PHAE	1.220e-13	54.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LF46_ECTSI	1.970e-13	55.56	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FXI0_ECTSI	1.380e-12	53.52	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
D8LCS7_ECTSI	5.380e-12	51.39	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D8LBY3_ECTSI	2.900e-11	45.78	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 53..77 e-value: 41.0 score: 8.2 coord: 101..124 e-value: 140.0 score: 3.9 coord: 173..194 e-value: 76.0 score: 6.0 coord: 125..149 e-value: 16.0 score: 11.6
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 128..186 e-value: 2.5E-6 score: 27.2
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 104..125 e-value: 0.58 score: 10.9
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 2..211 e-value: 2.2E-50 score: 173.5
None	No IPR available	PANTHER	PTHR46662	FAMILY NOT NAMED	coord: 94..188
None	No IPR available	PANTHER	PTHR46662:SF8		coord: 94..188
None	No IPR available	PANTHER	PTHR46662	FAMILY NOT NAMED	coord: 45..119
None	No IPR available	PANTHER	PTHR46662:SF8		coord: 45..119
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 49..189

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig737	contig	Ecto-sp13_S_contig737:3788..13226 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig737.18541.1	mRNA_Ecto-sp13_S_contig737.18541.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig737 3629..17039 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig737.18541.1 ID=prot_Ecto-sp13_S_contig737.18541.1|Name=mRNA_Ecto-sp13_S_contig737.18541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp
MTSTDREALVALFRSTGGAGWGQKGNWGTDSDLATWDGVRVHGQGHIPQL
ADLGALQSLHLFNNKLKGPIPPELGNLAELKELLLWTNQLSGGIPEELGN
LTALTHLWLNGNSLEGPIPPELGKLAALKELSLSSNHLSGPIPPELGNLG
ALIKLRLAGNELAGSIPPELGKLAALRWLDLRNNHLTGEKTFCASFRLNP
ADALAGHISEEKKYAVSIMCSKEQSAHSFVITFLTSVLVFAKNQRPQVGK
SSQLLGYWPWTNQKQRSGETNQECMDG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf