mRNA_Ecto-sp13_S_contig7369.18540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7369.18540.1
Unique NamemRNA_Ecto-sp13_S_contig7369.18540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A6H5JZB1_9PHAE (NMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.490e-32
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 192
            +AGCSLENVVRTRMYVTDIENAEKVMAEHC+VFSSIRPAATLISVSSLVHPDLLVEIEADALEP
Sbjct:  597 EAGCSLENVVRTRMYVTDIENAEKVMAEHCRVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 660
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: D7FU38_ECTSI (NMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU38_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 7.870e-32
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 192
            +AGCSLENVVRTRMYVTDI+NAEKVMAEHCKVFSSIRPAATL+SVSSLVHPDLLVEIEADALEP
Sbjct:  493 EAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLVSVSSLVHPDLLVEIEADALEP 556
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A1X1TVG1_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium florentinum TaxID=292462 RepID=A0A1X1TVG1_9MYCO)

HSP 1 Score: 80.1 bits (196), Expect = 8.610e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADA-LEP 192
            +AG SL++VVRTR+YVTDI    +V A H +VF  IRPAAT++ V++L+ P+LLVEIEADA LEP
Sbjct:   61 EAGASLDDVVRTRIYVTDISRWREVAAAHARVFGQIRPAATMVEVAALIAPELLVEIEADAYLEP 125
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A1A2LZW3_9MYCO (Uncharacterized protein n=3 Tax=unclassified Mycobacterium TaxID=2642494 RepID=A0A1A2LZW3_9MYCO)

HSP 1 Score: 79.7 bits (195), Expect = 1.420e-17
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADA 183
            QAG +L +VVRTR+YVTDI    +V A H +VF +IRPAAT++ VS+L+ PDLLVEIEADA
Sbjct:   59 QAGAALTDVVRTRIYVTDISRWHEVAAVHAQVFGAIRPAATMVEVSALIAPDLLVEIEADA 119
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A1X1Z2V0_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium palustre TaxID=153971 RepID=A0A1X1Z2V0_9MYCO)

HSP 1 Score: 79.0 bits (193), Expect = 2.850e-17
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADA 183
            +AG SL ++VRTRMYVTDI    +V A H +VF  IRPAAT++ VS+L+ P+LLVEIEADA
Sbjct:   61 EAGASLTDIVRTRMYVTDISRWREVAAVHAEVFGQIRPAATMVEVSALIAPELLVEIEADA 121
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A024JXS5_9MYCO (Endoribonuclease L-PSP n=1 Tax=Mycobacterium triplex TaxID=47839 RepID=A0A024JXS5_9MYCO)

HSP 1 Score: 78.6 bits (192), Expect = 3.140e-17
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADA-LEP 192
            QAG +L +V+RTR+YVTDI    +V A H +VF  IRPAAT++ VS+L+ P+LLVEIEADA +EP
Sbjct:   61 QAGATLSDVIRTRVYVTDISRWREVAAVHARVFGQIRPAATMVEVSALIAPELLVEIEADAYVEP 125
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A2K4Y8Y7_9MYCO (RidA family protein n=1 Tax=Mycobacterium ahvazicum TaxID=1964395 RepID=A0A2K4Y8Y7_9MYCO)

HSP 1 Score: 78.6 bits (192), Expect = 3.470e-17
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADA-LEP 192
            +AG SL +VVRTR+YVTDI    +V A H +VFS IRP AT++ VS+L+ P LLVEIEADA LEP
Sbjct:   61 EAGASLTDVVRTRIYVTDISRWREVAAVHARVFSEIRPVATMVEVSALIAPGLLVEIEADAYLEP 125
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A8J7PQU0_9BACT (RidA family protein n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7PQU0_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 3.560e-17
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 192
            QAG SL++VVRTRMY+T+I + EKV   H + F ++RPAAT++ VS L+ PD+LVEIEADA+ P
Sbjct:   66 QAGGSLQDVVRTRMYLTNIADWEKVGRAHGEAFGAVRPAATMVEVSKLIDPDMLVEIEADAVLP 129
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A1F3CQ74_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium RBG_16_67_12 TaxID=1797288 RepID=A0A1F3CQ74_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 3.740e-17
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    4 AGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 192
            AG  LE+VVRTR+YVT+I + E +   H +VF +IRPA+T++ VS LVHPD+LVEIEADA+ P
Sbjct:   66 AGARLEHVVRTRIYVTNIADWEHIGRAHGEVFGAIRPASTMVEVSRLVHPDMLVEIEADAIIP 128
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BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Match: A0A327X7A2_9BACT (Enamine deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax=Larkinella arboricola TaxID=643671 RepID=A0A327X7A2_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 4.800e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADAL 186
            +AG SL+NVVRTRMYVTDI   ++V   H +VF+ IRPA +++ VS+L+HPDLLVEIE  A+
Sbjct:   65 EAGASLQNVVRTRMYVTDISQWQEVGRAHGEVFNDIRPATSMVEVSALIHPDLLVEIEITAV 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7369.18540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZB1_9PHAE6.490e-3296.88NMO domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU38_ECTSI7.870e-3295.31NMO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1X1TVG1_9MYCO8.610e-1861.54Uncharacterized protein n=1 Tax=Mycobacterium flor... [more]
A0A1A2LZW3_9MYCO1.420e-1763.93Uncharacterized protein n=3 Tax=unclassified Mycob... [more]
A0A1X1Z2V0_9MYCO2.850e-1762.30Uncharacterized protein n=1 Tax=Mycobacterium palu... [more]
A0A024JXS5_9MYCO3.140e-1760.00Endoribonuclease L-PSP n=1 Tax=Mycobacterium tripl... [more]
A0A2K4Y8Y7_9MYCO3.470e-1763.08RidA family protein n=1 Tax=Mycobacterium ahvazicu... [more]
A0A8J7PQU0_9BACT3.560e-1759.38RidA family protein n=1 Tax=Zavarzinella sp. TaxID... [more]
A0A1F3CQ74_9BACT3.740e-1760.32Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
A0A327X7A2_9BACT4.800e-1759.68Enamine deaminase RidA (YjgF/YER057c/UK114 family)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7369contigEcto-sp13_S_contig7369:9..1062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score123.2
Seed ortholog evalue4.3e-26
Seed eggNOG ortholog2880.D7FU38
Model size195
KEGG rclassRC02541,RC02759
KEGG koko:K00459
KEGG ReactionR00025
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009410,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.2-nitropropane dioxygenase
EggNOG OGs2RHJM@2759,COG2070@1
EC1.13.12.16
Cds size195
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464005.0605714-CDS-Ecto-sp13_S_contig7369:8..1401681464005.0605714-CDS-Ecto-sp13_S_contig7369:8..140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7369 9..140 +
1681464005.078429-CDS-Ecto-sp13_S_contig7369:999..10621681464005.078429-CDS-Ecto-sp13_S_contig7369:999..1062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7369 1000..1062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7369.18540.1prot_Ecto-sp13_S_contig7369.18540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7369 9..1062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7369.18540.1

>prot_Ecto-sp13_S_contig7369.18540.1 ID=prot_Ecto-sp13_S_contig7369.18540.1|Name=mRNA_Ecto-sp13_S_contig7369.18540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
QAGCSLENVVRTRMYVTDIENAEKVMAEHCKVFSSIRPAATLISVSSLVH
PDLLVEIEADALEP*
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mRNA from alignment at Ecto-sp13_S_contig7369:9..1062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7369.18540.1 ID=mRNA_Ecto-sp13_S_contig7369.18540.1|Name=mRNA_Ecto-sp13_S_contig7369.18540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1054bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7369:9..1062+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCGGATGCTCCTTGGAGAACGTGGTGAGGACTCGCATGTACGTGAC
CGACATTGAGAACGCGGAGAAGGTGATGGCGGAACACTGCAAGGTCTTCA
GCAGCATCCGCCCTGCTGCGACCCTCATCAGCGTGAGTTAGTCGCGCCGC
ATTTCGAGGCAGTGTGTGTGTGTGTTTTTTTTTGCTTTACTCTTTTTTTT
TGAGGCAATGCTTAACTACGTCGGGAGAATCCTCCGTAGAAGAACGTGTT
GTGAGCGAAGGAAGTCGGAGACGGGTTGATTGAAAATTTGCATCGAGTCA
CTCCTCCGACTCTTTGTGTACGCCATCCAGGAGAGATGAAAATGGTTAAT
GAAGTCCTGAAAATAGATTTGGTTCGGAACAGGTAATGATTTGTCTGTGG
AACATTGTTTTAGACTGCAGTAGTGGAGGGTGGTGTGACAAAGGCCTCGA
CCGCCTTCTACCGGAGCCCCCTCCTATAAGGTACACTCTGATATCGTCGC
TCGGAGCTACGACTCTATTCTTCTTTCTGTTCTGTTCTGTTCGTGAGTGA
AAAATCTTACCATTTAATTTCGGCGAATTCGACGAATTGTGCCACATACT
CCAGTTTTCTCTTTTCAGTGCAGGACGAGACTTCGTTGTTATGTCTAGTA
CTACGTACGCGACGATACTTTGCCTCTCGTCCGTTTTTTTCAATGCAGGA
CGAAGGTTCGTTCTCATGTTCAGTCTACGTACGCGATGATACTTTGTCCT
TTGTCCGATTTTTCGGTACAGCTTCGTTGTTGTGTTTGGGACACCTGTGC
GACGATGTGCAAACGGGTTTTCTTTTTTATTTCATGCAGGACGAAGCTTC
GTTGTTGCTTTTGGTATGTACATGCGACGATACATTCCTCTTGTTCATTT
TGTAATGCAAGACTAAGCTTCGGTGGAAGTCGGAGACGTGTGCGAGGCGA
TTTGCAACCGTTTTTTTTTTTACATTCTGTCTGTGAAACAGGTGAGCTCT
CTCGTCCACCCGGACCTGCTCGTGGAGATCGAGGCGGATGCGCTCGAGCC
CTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7369:9..1062+

>mRNA_Ecto-sp13_S_contig7369.18540.1 ID=mRNA_Ecto-sp13_S_contig7369.18540.1|Name=mRNA_Ecto-sp13_S_contig7369.18540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7369:9..1062+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCGGATGCTCCTTGGAGAACGTGGTGAGGACTCGCATGTACGTGAC
CGACATTGAGAACGCGGAGAAGGTGATGGCGGAACACTGCAAGGTCTTCA
GCAGCATCCGCCCTGCTGCGACCCTCATCAGCGTGAGCTCTCTCGTCCAC
CCGGACCTGCTCGTGGAGATCGAGGCGGATGCGCTCGAGCCCTAA
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