mRNA_Ecto-sp13_S_contig73641.18536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73641.18536.1
Unique NamemRNA_Ecto-sp13_S_contig73641.18536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.230e-19
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQR 135
            VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQ+FAQR
Sbjct:  263 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQVFAQR 307
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: D7FUR6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR6_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.320e-19
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQR 135
            VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQ+FAQR
Sbjct:  257 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQVFAQR 301
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A7S0Q4K2_9EUKA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4K2_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 3.040e-15
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    4 ELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            ELCGALKNVVALGA FCDGLG+GGNTKAAI+R GL EMQ+F +++
Sbjct:  233 ELCGALKNVVALGAGFCDGLGFGGNTKAAIIRIGLKEMQLFCEKF 277
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A397ALS8_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ALS8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.320e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  196 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 241
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A6A5A9Z2_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A9Z2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.420e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  201 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 246
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A6G0WBF1_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBF1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.440e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  202 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 247
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A067D8S7_SAPPC (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D8S7_SAPPC)

HSP 1 Score: 76.3 bits (186), Expect = 3.560e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  208 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 253
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BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A024UGT0_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024UGT0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.640e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  212 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 257
[Close]
BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: A0A024UGF2_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UGF2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.930e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  228 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Match: W4GCC6_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCC6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.970e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY 138
            VELCGALKNVVALGA FCDGLGYGGNTKAAI+R GL EM+ F  R+
Sbjct:  230 VELCGALKNVVALGAGFCDGLGYGGNTKAAIIRLGLIEMKKFCYRF 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73641.18536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZY6_9PHAE1.230e-1997.78Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
D7FUR6_ECTSI1.320e-1997.78Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S0Q4K2_9EUKA3.040e-1577.78Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A397ALS8_9STRA3.320e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A6A5A9Z2_9STRA3.420e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A6G0WBF1_9STRA3.440e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A067D8S7_SAPPC3.560e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Ta... [more]
A0A024UGT0_9STRA3.640e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=8 Ta... [more]
A0A024UGF2_9STRA3.930e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=5 Ta... [more]
W4GCC6_9STRA3.970e-1580.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=9 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73641contigEcto-sp13_S_contig73641:485..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.8
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog112098.XP_008604722.1
Model size138
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.glycerol-3-phosphate catabolic process
EggNOG OGsCOG0240@1,KOG2711@2759
EC1.1.1.8
Cds size138
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.809287-CDS-Ecto-sp13_S_contig73641:484..6221681464004.809287-CDS-Ecto-sp13_S_contig73641:484..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73641 485..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73641.18536.1prot_Ecto-sp13_S_contig73641.18536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73641 485..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73641.18536.1

>prot_Ecto-sp13_S_contig73641.18536.1 ID=prot_Ecto-sp13_S_contig73641.18536.1|Name=mRNA_Ecto-sp13_S_contig73641.18536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
VELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQIFAQRY
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mRNA from alignment at Ecto-sp13_S_contig73641:485..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73641.18536.1 ID=mRNA_Ecto-sp13_S_contig73641.18536.1|Name=mRNA_Ecto-sp13_S_contig73641.18536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73641:485..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGAGCTTTGCGGCGCGCTGAAGAACGTCGTGGCGCTGGGGGCGGCCTT
TTGCGATGGCCTGGGGTACGGGGGAAACACCAAGGCGGCTATCGTCCGCA
CAGGCCTCGCCGAGATGCAGATCTTCGCACAGAGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73641:485..622+

>mRNA_Ecto-sp13_S_contig73641.18536.1 ID=mRNA_Ecto-sp13_S_contig73641.18536.1|Name=mRNA_Ecto-sp13_S_contig73641.18536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73641:485..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGAGCTTTGCGGCGCGCTGAAGAACGTCGTGGCGCTGGGGGCGGCCTT
TTGCGATGGCCTGGGGTACGGGGGAAACACCAAGGCGGCTATCGTCCGCA
CAGGCCTCGCCGAGATGCAGATCTTCGCACAGAGGTAC
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