mRNA_Ecto-sp13_S_contig7360.18533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7360.18533.1
Unique NamemRNA_Ecto-sp13_S_contig7360.18533.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A6H5K9Y6_9PHAE (dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9Y6_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.920e-68
Identity = 103/108 (95.37%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPG 324
            KRGAFILFEGVDRCGKTTQANLLVESLKQ GHD CFMRFPDRTTPIG MINGFLQNTT IDDRCVHLLFSANRWEAESKIRELLK GTTVVCDRYAYSGVAFSASKPG
Sbjct:   25 KRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGQMINGFLQNTTGIDDRCVHLLFSANRWEAESKIRELLKVGTTVVCDRYAYSGVAFSASKPG 132
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A835ZMW1_9STRA (dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMW1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 8.600e-50
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPG 324
            +RGAFILFEGVDRCGKTTQ   LV+ LK+ GHD   MRFPDRTT IG MIN +LQ+T ++DD+C+HLLFSANRWEA S I   L AG T+VCDRYAYSGVAFSA+KPG
Sbjct:   17 QRGAFILFEGVDRCGKTTQCERLVKRLKEDGHDAVHMRFPDRTTAIGQMINAYLQSTAEMDDQCIHLLFSANRWEALSTIERRLAAGLTIVCDRYAYSGVAFSAAKPG 124
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A8K1FAG4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAG4_PYTOL)

HSP 1 Score: 147 bits (370), Expect = 4.500e-42
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGE----CW 333
            +RG F+LFEGVDRCGKTTQ  LL E+L+Q+G  +  + FPDR+T IG  IN +L  T  +DDR +HLLF+ANRWEA  KI +LLK+G  +V DRY++SGVAFSA+KPG     CW
Sbjct:    6 RRGVFVLFEGVDRCGKTTQTKLLQETLQQSGRASSLLHFPDRSTAIGQSINAYLTTTQAMDDRAIHLLFAANRWEAAGKIEDLLKSGVNIVMDRYSFSGVAFSAAKPGMTIDWCW 120
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A7S2H363_9STRA (dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H363_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.760e-42
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = 1 
Query:    4 RGAFILFEGVDRCGKTTQANLLVESLKQTGHDT--------------CFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPG 324
            RGAFIL EGVDRCGKTTQ  +L ++L    H                  MRFPDRTT IG MING+L N  D+DDR +HLLFSANRWEA +KI + L+AGTT+VCDRYAYSGVAFS +K G
Sbjct:   44 RGAFILLEGVDRCGKTTQTKMLADTLSAARHAAPSGAIDDQNMPPRATLMRFPDRTTTIGQMINGYLANGVDMDDRAIHLLFSANRWEARAKIEDTLRAGTTIVCDRYAYSGVAFSGAKEG 164
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A6A7G8R9_9CRUS (dTMP kinase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8R9_9CRUS)

HSP 1 Score: 147 bits (370), Expect = 5.180e-42
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGECWW 336
            KRGAFIL EG+DRCGK+TQ  LL + L+  GH  C + FPDR T IG MIN +L  T+++DDR +HLLFSANRWEA SKI++ L  GTT++ DRY+YSGVAFS +K  +  W
Sbjct:   18 KRGAFILLEGIDRCGKSTQTGLLTKFLQNAGHSVCQLHFPDRDTRIGQMINSYLLETSNLDDRTIHLLFSANRWEASSKIKDALSNGTTLIVDRYSYSGVAFSTAKGLDMQW 129
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A4Y9YGE7_9APHY (dTMP kinase n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9YGE7_9APHY)

HSP 1 Score: 145 bits (366), Expect = 2.910e-41
Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGE 327
            KRGAFI+ EG+DR GK+TQA +LV+ LKQ G D   MRFPDR+TPIG MI+ +L++ +++DD  +HLLFSANRWE  S I   LKAGTT+VCDRYA+SG+AFS  KP  
Sbjct:    6 KRGAFIVLEGLDRSGKSTQAAMLVDRLKQEGVDVKLMRFPDRSTPIGKMIDSYLRSHSELDDHAIHLLFSANRWEFASTISATLKAGTTIVCDRYAFSGIAFSFCKPSN 114
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A2D4BHC5_PYTIN (dTMP kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHC5_PYTIN)

HSP 1 Score: 144 bits (363), Expect = 4.860e-41
Identity = 69/114 (60.53%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    4 RGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGE----CW 333
            RG F+LFEGVDRCGKTTQ  LL E L+  G  +  + FPDR+T IG  IN +L   T +DDR +HLLF+ANRWEA SKI ELL +G  VV DRY++SGVAFSA+KPG     CW
Sbjct:    5 RGVFVLFEGVDRCGKTTQTRLLHEKLQALGRQSALLHFPDRSTAIGQSINAYLTTATAMDDRAIHLLFAANRWEAASKIEELLTSGVNVVMDRYSFSGVAFSAAKPGLSLDWCW 118
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: A0A7S2L3C4_9STRA (dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3C4_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.230e-40
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASK 318
            KRGAFIL EGVDRCGKTTQ  LL++ L   G     MRFPDRTT +G +ING+L  T +++DR VHLLFSANRWEA + + + L  GTT+VCDRYAYSGVAFS++K
Sbjct:   15 KRGAFILLEGVDRCGKTTQCGLLLQHLLALGITALAMRFPDRTTMVGQLINGYLSQTREMEDRAVHLLFSANRWEASNSLAQHLANGTTIVCDRYAYSGVAFSSAK 120
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: S8EDI9_FOMPI (dTMP kinase n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8EDI9_FOMPI)

HSP 1 Score: 143 bits (361), Expect = 1.650e-40
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGE 327
            KRGAFI+ EG+DR GK+TQA LL + LKQ G D   ++FPDRTTPIG MI+ +L++ +D+DD  +HLLFSANRWE  S I   L+AGT VVCDRYA+SG+AFS  KP  
Sbjct:    6 KRGAFIVLEGLDRSGKSTQAALLADRLKQEGVDVKLIKFPDRTTPIGKMIDSYLRSQSDLDDHAIHLLFSANRWELASSIEAALRAGTIVVCDRYAFSGIAFSFCKPSN 114
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BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Match: W7TN04_9STRA (dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN04_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.710e-40
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    4 RGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPG 324
            RGAFI+ EGVDRCGKTTQ   +V++L   G     +RFPDRTT IG MIN +L N TD+DDR +HLLFSANRWEA + +R  L AG T+VCDRYAYSGVAFSA+K G
Sbjct:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDG 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7360.18533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y6_9PHAE1.920e-6895.37dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835ZMW1_9STRA8.600e-5072.22dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A8K1FAG4_PYTOL4.500e-4259.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2H363_9STRA4.760e-4260.33dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687... [more]
A0A6A7G8R9_9CRUS5.180e-4259.82dTMP kinase (Fragment) n=1 Tax=Hirondellea gigas T... [more]
A0A4Y9YGE7_9APHY2.910e-4162.39dTMP kinase n=1 Tax=Fomitopsis rosea TaxID=34475 R... [more]
A0A2D4BHC5_PYTIN4.860e-4160.53dTMP kinase n=1 Tax=Pythium insidiosum TaxID=11474... [more]
A0A7S2L3C4_9STRA1.230e-4064.15dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
S8EDI9_FOMPI1.650e-4061.47dTMP kinase n=1 Tax=Fomitopsis pinicola (strain FP... [more]
W7TN04_9STRA2.710e-4065.42dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7360contigEcto-sp13_S_contig7360:5869..7122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score221.1
Seed ortholog evalue2.9e-55
Seed eggNOG ortholog2880.D7FSC0
Model size372
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons3
EggNOG free text desc.dTDP metabolic process
EggNOG OGsCOG0125@1,KOG3327@2759
EC2.7.4.9
Cds size372
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.656684-CDS-Ecto-sp13_S_contig7360:5868..59891681464004.656684-CDS-Ecto-sp13_S_contig7360:5868..5989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7360 5869..5989 +
1681464004.6708195-CDS-Ecto-sp13_S_contig7360:6535..66441681464004.6708195-CDS-Ecto-sp13_S_contig7360:6535..6644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7360 6536..6644 +
1681464004.6831043-CDS-Ecto-sp13_S_contig7360:6980..71221681464004.6831043-CDS-Ecto-sp13_S_contig7360:6980..7122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7360 6981..7122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7360.18533.1prot_Ecto-sp13_S_contig7360.18533.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7360 5869..7122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7360.18533.1

>prot_Ecto-sp13_S_contig7360.18533.1 ID=prot_Ecto-sp13_S_contig7360.18533.1|Name=mRNA_Ecto-sp13_S_contig7360.18533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
KRGAFILFEGVDRCGKTTQANLLVESLKQTGHDTCFMRFPDRTTPIGHMI
NGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGV
AFSASKPGECWWSVWWSSWVVVG*
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mRNA from alignment at Ecto-sp13_S_contig7360:5869..7122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7360.18533.1 ID=mRNA_Ecto-sp13_S_contig7360.18533.1|Name=mRNA_Ecto-sp13_S_contig7360.18533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7360:5869..7122+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGGGGAGCGTTTATTCTGTTCGAGGGCGTGGATAGGTGCGGGAAAAC
GACGCAGGCGAATTTGTTGGTGGAGAGTCTCAAACAGACTGGTCACGACA
CCTGCTTCATGCGCTTTCCTGGTGAGAACATCAACGTATCATTGCACGTT
TGCTCGAAGCCCTACGTGGAATTGCTCGTGAAGCTCGTGTGTGTGGCATG
CAACCGAACGCTTTCTTGCGAGAGATAGCTATGTGAAACGGGCAGTGGAG
TGAGGAGGTAGCATTGCGGCAAGCGCAGCTTAGTTACAAGTTCGAACTTT
TCAAAAAAATTTAACCGCTTGTAGTCTAGAGGTCCAGCTTGTTGCGACAC
CATGCGATTGGTACATGGGTGGACTCGTTGTCTGCCGCCGTTCGTGAGCT
GCTGTAAGCAAGTAGTCTTTTGGTAGATTTATCTGCATCTCTGTCATGCA
CGACGGGTTTGCAGATGCACAAGTGACCAGTGAGGCGAAGAGCTTGGTCT
AATGTTTGGGGACCACCAATGCAGCAATCGCAGCAGGAGCGCAGCAGACT
CGGTGGGAATCATGGTCGTTCATACCGGGCTGTCAGAACATCACGAGATA
CGTCCAGCGGGTGTAATCAACTGACTGCTGTTCCGCACGGTGCTGGTGAC
TCTCGTCTTCCGTACAGATCGAACAACGCCAATTGGACACATGATCAACG
GCTTCCTGCAGAACACTACGGACATCGACGATCGATGTGTGCACCTTCTC
TTCTCTGCGAATCGATGGGAGGCAGAGTGAGTTCTCGCCAACCACGTTTT
GGTGTGGGATTGGGTCCGGCTACAGCTAGTGAAGATATCACACGGCACCA
ACCATGGTATGGGTGCAAGCTGGCAAGCGACTACTGTCGTCATTGTGTTT
GCGCTTCAACTGATACTGGAGCAATACGTCAGTGAACTAGAGTAGACCAT
TCGCCCGCCACACGACGTAGAACGGCCTCGCCAGTACAGGGACTTCCTTC
CAAGTACAAAGGAAACGACGTGATGCAGGCGTTCAACCGTGCGGGTGCAA
CAGCAGTAGTCAGCATGCACCATCATGGCTGACGTGTGGGTCGTGCTTTG
CGTTGTGGACAGATCGAAAATCCGAGAGCTGCTCAAGGCGGGTACTACCG
TCGTGTGTGATCGGTACGCCTACAGCGGAGTCGCCTTTTCAGCTTCCAAA
CCCGGTGAGTGCTGGTGGTCTGTCTGGTGGTCGTCTTGGGTTGTAGTGGG
TTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7360:5869..7122+

>mRNA_Ecto-sp13_S_contig7360.18533.1 ID=mRNA_Ecto-sp13_S_contig7360.18533.1|Name=mRNA_Ecto-sp13_S_contig7360.18533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7360:5869..7122+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGGGGAGCGTTTATTCTGTTCGAGGGCGTGGATAGGTGCGGGAAAAC
GACGCAGGCGAATTTGTTGGTGGAGAGTCTCAAACAGACTGGTCACGACA
CCTGCTTCATGCGCTTTCCTGATCGAACAACGCCAATTGGACACATGATC
AACGGCTTCCTGCAGAACACTACGGACATCGACGATCGATGTGTGCACCT
TCTCTTCTCTGCGAATCGATGGGAGGCAGAATCGAAAATCCGAGAGCTGC
TCAAGGCGGGTACTACCGTCGTGTGTGATCGGTACGCCTACAGCGGAGTC
GCCTTTTCAGCTTCCAAACCCGGTGAGTGCTGGTGGTCTGTCTGGTGGTC
GTCTTGGGTTGTAGTGGGTTGA
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