mRNA_Ecto-sp13_S_contig7359.18527.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7359.18527.1
Unique NamemRNA_Ecto-sp13_S_contig7359.18527.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: D8LTE9_ECTSI (RecQ-mediated genome instability protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE9_ECTSI)

HSP 1 Score: 926 bits (2394), Expect = 0.000e+0
Identity = 589/735 (80.14%), Postives = 595/735 (80.95%), Query Frame = 1 
Query:    1 MQQTATRVRQSMAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARETARAGGAQSTAGAATNATNNDDTVEPRTSRNQPGEPPGRTATDSGAAGNSGPRARAPRNATRAQAENSGWPRPPQPGGSHRHDENADPSGVVDLSSSSSSSGGNADTPLSSQGRRADDTEGRQRSRSASGNGGVVGSSRPSGSSSGVFNPYAAATGPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTARSESQQSVAQSRSYGSSGEQGRPRGGETRVPAFQDLEDDDGPGFEYLEEPDFDDXXXXXXXXXXXXXXXXX--VRNGRNPGMLSDPPRVSASTERSSPTAAAVTPRTTIVSARVQKEKLRQXXXXXXXXXXXXXXXXXXXXXXXXXVADIEGEFGGVGRSRTELEVSSRSKRGRSSSEIGSRAGGDRERRNETRPSPSSGPYTSLEDLDRFAAAGGGMFRVKAVVSDTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQADPEKAISIQTRVEKEIREMEGVMEIQTSAGATSSQSPATPGA-MSQNSATGDSEWGLPMVVSVKPPTDGDCHELLSRVTSLL 2196
            MQQTATRVRQSMAGLGVHLRLDWVKHCLEAGGGMDPGA GNGQRQQSEAQEGVYRTFLACDLRE GEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEY+RVQGLVADPPLGLKLLLVEPWVRRGILLLSS+NT VLGGEVSSLVEARETARAGGAQSTAGAATNATNNDDT+EPRTSRNQPGEP GRTATDSGAAGNSGPR                       GGSHRHDENADPSGVVDLSSSSSS GGNADTPLSSQGRR                       RPSGS SGVFNPYAAA      XXXXXXXXXXXXXXXXXXXX            GTARS+S Q  A+SRS GSSG QGRPRGGETRVPAFQDLEDDDGPGFEYLEEPDFDD                   VRNGRNPGM SDPPRVS ST                            XXXXXXXXXXXXXXXXXXX      VADIEGEFGG GRSRT LEVSSRSKRGRSSSEIGSRAGG RER N TRPSP SGPYTSLEDLDR AAAGGGM+RVKAVVSDTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQADPEKAISIQTRVEKEIREMEGVMEIQTSAGATSS SPATPGA MSQNSATGDSEWGLPMVVSVKPPTDGDC ELLSRVTSLL
Sbjct:    1 MQQTATRVRQSMAGLGVHLRLDWVKHCLEAGGGMDPGAIGNGQRQQSEAQEGVYRTFLACDLREAGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYRRVQGLVADPPLGLKLLLVEPWVRRGILLLSSENTTVLGGEVSSLVEARETARAGGAQSTAGAATNATNNDDTLEPRTSRNQPGEPAGRTATDSGAAGNSGPRXXXXXXXXXXXXXXXXXXXXXXXGGSHRHDENADPSGVVDLSSSSSS-GGNADTPLSSQGRRXXXXXXXXXXXXXXXXXXXXXXXRPSGSGSGVFNPYAAAXXXXXXXXXXXXXXXXXXXXXXXXXXTLSATSSAAETVGTARSQSPQGAARSRSSGSSGGQGRPRGGETRVPAFQDLEDDDGPGFEYLEEPDFDDEEHDNEPPKEAVAAANAAAVRNGRNPGMRSDPPRVSTSTGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGDGEVADIEGEFGGGGRSRTGLEVSSRSKRGRSSSEIGSRAGGGRERSNGTRPSPPSGPYTSLEDLDRLAAAGGGMYRVKAVVSDTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQADPEKAISIQTRVEKEIREMEGVMEIQTSAGATSSPSPATPGAAMSQNSATGDSEWGLPMVVSVKPPTDGDCLELLSRVTSLL 734
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A8J9RNM3_9CHLO (Probable recQ-mediated genome instability protein 1 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RNM3_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-15
Identity = 63/173 (36.42%), Postives = 89/173 (51.45%), Query Frame = 1 
Query:   22 VRQSMAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEAR 540
            V+  +  LGVHL+  +V   L   G   P AS        E  + V+  FL  DL   G  CL A +       ++G+ V+QV+ A D A   + R   DG+ A   LKL+L DGRQ   AFE + +  L    P GLK+ + +  ++RG+L+L  +N  VLGGEV  L +AR
Sbjct:    4 VQAMLVDLGVHLKASFVSEALTFLG--RPTASAE------ERVQFVFSHFLTADLNSCGSGCLLANLHSQHNTVLRGRHVLQVDEATDTAACAKHR--YDGAGAKRCLKLSLTDGRQRAFAFEQQPISTLHTLCPAGLKVAITDAPIKRGMLVLKPENITVLGGEVERLEQAR 166
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A5P1FHM6_ASPOF (RecQ-mediated genome instability protein 1 n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FHM6_ASPOF)

HSP 1 Score: 91.3 bits (225), Expect = 3.870e-15
Identity = 58/167 (34.73%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:   43 LGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARE 543
            LG+ LR +W++ C+    G+D    G  +   SE  +  +  FL  D+   G   LPA V GM K  ++G  V+Q++   +IA  L +R     +     LKL+L DG Q V   EY+ ++ L    P GLK+++    +RRG+L+L  +   VLGG V  L  ARE
Sbjct:  112 LGLRLRREWLESCVS---GLDRSGLGFERMGVSEKAKLCFEQFLFSDMSYCGAGILPANVSGMHKVELEGPFVLQIDEVINIAVPLRERYHRAHAGTKRCLKLSLTDGIQRVFGMEYRPIKDLDVIGPAGLKIIVRNIHIRRGLLMLVPEVLEVLGGLVEDLEAARE 275
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A1E5VPI5_9POAL (RecQ-mediated genome instability protein 1 (Fragment) n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPI5_9POAL)

HSP 1 Score: 90.9 bits (224), Expect = 5.180e-15
Identity = 55/170 (32.35%), Postives = 87/170 (51.18%), Query Frame = 1 
Query:   34 MAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARE 543
            + GLG+ LR +W++ C     G D       Q ++       +  FL  D+ + G   LP GVGGM    + G  VVQV+   +I+  L++R +   +     LKL++ DG Q +   EY+ ++ L    P GLK++L    +RRG+L+L  +   +LGG V  L  AR+
Sbjct:  192 LRGLGLRLRPEWLESCAAGIPGFDGLGGAEAQARR------CFEQFLFADMNDCGAGVLPEGVGGMHAAVLDGPFVVQVDEIVNISAPLKERYRDAHAGPKRCLKLSMTDGIQRIFGMEYRPIKYLAVLAPAGLKIVLRNVHIRRGLLMLVPEVIEILGGVVDELEAARD 355
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A5J9TWG0_9POAL (RecQ-mediated genome instability protein 1 (Fragment) n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TWG0_9POAL)

HSP 1 Score: 87.0 bits (214), Expect = 1.050e-13
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 1 
Query:   22 VRQSMAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEAR 540
            V + + GLG+ LR +W++ C     G D       Q ++       +  FL  D+   G   LP GVG M    + G  V+QV+   +I+  L +R +   +     LKL++ DG Q +   EY+ ++ L    P GLK++L    +RRG+L+L  +    LGG V  L EAR
Sbjct:  172 VVEFLRGLGLRLRPEWLESCAAGVPGFDGLGGAEAQARR------CFEQFLFADMNTCGAGVLPEGVGSMHTAVLDGPFVLQVDEIVNISAPLRERYRDTHAGPKRCLKLSMTDGIQRIFGMEYRPIKDLQVLAPAGLKIVLRNVHIRRGLLMLVPEVIQFLGGVVDDLEEAR 338
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A383VJY1_TETOB (DUF1767 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJY1_TETOB)

HSP 1 Score: 86.7 bits (213), Expect = 1.640e-13
Identity = 60/165 (36.36%), Postives = 87/165 (52.73%), Query Frame = 1 
Query:   55 LRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEAC-LPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHT-LKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARE 543
            ++  W++  L+       GA G   R Q   +  +    L  D R  G    LPA +  M K+ ++GK ++Q++ A +IA  ++ R +     AH+  LKL L DG Q + A EY+    L    P G+KLLLV P VRRG+LLL  +N +VLGG V  L  AR+
Sbjct:   20 IKQQWLEQLLQQLQTAHDGAFGQLPRDQQRQK--LLEQLLMADFRAAGAGGHLPAAIQDMHKQTMQGKFMLQLDEAVNIAAGIKDRYR---EPAHNRCLKLHLTDGVQQLVAVEYRHCPALGLLMPAGIKLLLVNPAVRRGVLLLQPENVVVLGGVVERLEAARQ 179
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A7J7QC97_9CHLO (RMI1_N domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QC97_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 2.080e-13
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:  181 DLREVGEAC-LPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHT-LKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARE 543
            D R  G    LPA V  M K+ ++GK ++Q++ A +IA  ++ R +     AH+  LKL L DG Q + A EY+    L    P G+KLLLV P VRRG+LLL  +N +VLGG V  L  AR+
Sbjct:    3 DFRSAGAGGHLPAAVQDMHKQVMQGKFMLQLDEAVNIAAGIKDRYR---EPAHNRCLKLHLTDGVQQLVAVEYRHCPALGLLMPAGIKLLLVNPAVRRGMLLLQPENVVVLGGVVERLEAARQ 122
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: A0A2T7CU54_9POAL (RecQ-mediated genome instability protein 1 n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7CU54_9POAL)

HSP 1 Score: 85.9 bits (211), Expect = 2.210e-13
Identity = 54/176 (30.68%), Postives = 89/176 (50.57%), Query Frame = 1 
Query:   22 VRQSMAGLGVHLRLDWVKHCLEAGGGMDP--GASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARE 543
            V + + GLG+ LR +W++ C     G D   GA+   +R         +  FL  D+   G   LP GVG M    + G  V+QV+   +++  L++R +   +     LKL++ DG Q +   EY+ ++ L    P GLK+++    +RRG+L+L  +   +LGG V  L  AR+
Sbjct:  222 VYELLRGLGLRLRPEWLESCAAGIPGFDGLGGAAAQARR--------CFEQFLFADMNACGAGVLPEGVGSMHATVLDGPFVLQVDEIVNMSAPLKERYRDAHAGPKRCLKLSMTDGIQRIFGMEYRPIKDLAVLAPAGLKIIIRNVHIRRGLLMLVPEVIDILGGIVDELEAARD 389
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: UPI001FB0DAE1 (recQ-mediated genome instability protein 1 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0DAE1)

HSP 1 Score: 84.7 bits (208), Expect = 3.600e-13
Identity = 53/174 (30.46%), Postives = 92/174 (52.87%), Query Frame = 1 
Query:   22 VRQSMAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEARE 543
            V + + GLG+ LR  W+  C++   G++    G G+   +   +  ++ FL  D++  G   LP  VG M    ++G  V+QV+   +I+  L+ R +     A   LKL++ DG ++V   EY+ ++ L    P G+K+++    VRRGI++L  +   V+GG V  L  AR+
Sbjct:  111 VGRILHGLGLRLRRQWLDSCVQ---GLENSVPGFGRLDVTAKAKLCFQQFLFSDMKFSGSGILPENVGSMHLVDLEGPFVLQVDEIVNISIALKTRYQNANPGAKRCLKLSITDGVRSVVGMEYRPIKDLQVFSPSGMKVIIRNVQVRRGIMMLVPEVFEVVGGLVEDLEAARQ 281
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BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Match: K3Y5D2_SETIT (RecQ-mediated genome instability protein 1 n=5 Tax=Setaria TaxID=4554 RepID=K3Y5D2_SETIT)

HSP 1 Score: 84.7 bits (208), Expect = 4.900e-13
Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 1 
Query:   22 VRQSMAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQEGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLVEPWVRRGILLLSSDNTIVLGGEVSSLVEAR 540
            V + + GLG+ LR +W++ C     G D       Q ++       +  FL  D+   G   LP GVGGM    + G  V+QV+   +++  L++R     +     LKL++ DG Q +   EY+ ++ L    P GLK+++    +RRG+L+L  +   +LG  V  L  AR
Sbjct:  193 VYELLRGLGLRLRPEWLESCAAGIPGFDGLGGAEAQARR------CFEQFLFADMNACGAGVLPEGVGGMHAAVLDGPFVLQVDEIVNMSAPLKERYHDAHAGPKRCLKLSMTDGMQRIFGMEYRPIKDLAVLAPAGLKIVIRNVHIRRGLLMLVPEVIEILGAVVDELEAAR 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7359.18527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE9_ECTSI0.000e+080.14RecQ-mediated genome instability protein 1 n=2 Tax... [more]
A0A8J9RNM3_9CHLO1.050e-1536.42Probable recQ-mediated genome instability protein ... [more]
A0A5P1FHM6_ASPOF3.870e-1534.73RecQ-mediated genome instability protein 1 n=2 Tax... [more]
A0A1E5VPI5_9POAL5.180e-1532.35RecQ-mediated genome instability protein 1 (Fragme... [more]
A0A5J9TWG0_9POAL1.050e-1331.79RecQ-mediated genome instability protein 1 (Fragme... [more]
A0A383VJY1_TETOB1.640e-1336.36DUF1767 domain-containing protein n=1 Tax=Tetrades... [more]
A0A7J7QC97_9CHLO2.080e-1343.09RMI1_N domain-containing protein n=1 Tax=Scenedesm... [more]
A0A2T7CU54_9POAL2.210e-1330.68RecQ-mediated genome instability protein 1 n=5 Tax... [more]
UPI001FB0DAE13.600e-1330.46recQ-mediated genome instability protein 1 n=1 Tax... [more]
K3Y5D2_SETIT4.900e-1330.06RecQ-mediated genome instability protein 1 n=5 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7359contigEcto-sp13_S_contig7359:1057..6888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score942.2
Seed ortholog evalue1.5e-271
Seed eggNOG ortholog2880.D8LTE9
Preferred nameRMI1
Model size2798
KEGG koko:K10990,ko:K15364,ko:K15700,ko:K18404
KEGG Pathwayko03460,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000217,GO:0000278,GO:0000280,GO:0000400,GO:0000819,GO:0002021,GO:0002023,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0009991,GO:0010033,GO:0016043,GO:0016604,GO:0022402,GO:0031422,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033500,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0035264,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042755,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048285,GO:0048589,GO:0048878,GO:0050896,GO:0051276,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1903047
Exons8
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG3683@1,KOG3683@2759
Ec32 ortholog descriptionDomain of unknown function DUF1767
Ec32 orthologEc-02_006090.1
EC2.3.2.27
Cds size2199
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036,ko03400,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7359.18527.1prot_Ecto-sp13_S_contig7359.18527.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7359 1057..6289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.0998309-CDS-Ecto-sp13_S_contig7359:1056..13231681464004.0998309-CDS-Ecto-sp13_S_contig7359:1056..1323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 1057..1323 +
1681464004.114138-CDS-Ecto-sp13_S_contig7359:1750..18581681464004.114138-CDS-Ecto-sp13_S_contig7359:1750..1858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 1751..1858 +
1681464004.1264873-CDS-Ecto-sp13_S_contig7359:2347..24881681464004.1264873-CDS-Ecto-sp13_S_contig7359:2347..2488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 2348..2488 +
1681464004.1380494-CDS-Ecto-sp13_S_contig7359:2965..36581681464004.1380494-CDS-Ecto-sp13_S_contig7359:2965..3658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 2966..3658 +
1681464004.1499817-CDS-Ecto-sp13_S_contig7359:3926..43861681464004.1499817-CDS-Ecto-sp13_S_contig7359:3926..4386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 3927..4386 +
1681464004.1623995-CDS-Ecto-sp13_S_contig7359:4811..49811681464004.1623995-CDS-Ecto-sp13_S_contig7359:4811..4981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 4812..4981 +
1681464004.1796784-CDS-Ecto-sp13_S_contig7359:5649..57901681464004.1796784-CDS-Ecto-sp13_S_contig7359:5649..5790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 5650..5790 +
1681464004.1905336-CDS-Ecto-sp13_S_contig7359:6070..62891681464004.1905336-CDS-Ecto-sp13_S_contig7359:6070..6289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7359 6071..6289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.2017457-UTR-Ecto-sp13_S_contig7359:6289..68881681464004.2017457-UTR-Ecto-sp13_S_contig7359:6289..6888Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7359 6290..6888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7359.18527.1

>prot_Ecto-sp13_S_contig7359.18527.1 ID=prot_Ecto-sp13_S_contig7359.18527.1|Name=mRNA_Ecto-sp13_S_contig7359.18527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=733bp
MQQTATRVRQSMAGLGVHLRLDWVKHCLEAGGGMDPGASGNGQRQQSEAQ
EGVYRTFLACDLREVGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNL
EQREKVDGSSAHHTLKLALGDGRQTVAAFEYKRVQGLVADPPLGLKLLLV
EPWVRRGILLLSSDNTIVLGGEVSSLVEARETARAGGAQSTAGAATNATN
NDDTVEPRTSRNQPGEPPGRTATDSGAAGNSGPRARAPRNATRAQAENSG
WPRPPQPGGSHRHDENADPSGVVDLSSSSSSSGGNADTPLSSQGRRADDT
EGRQRSRSASGNGGVVGSSRPSGSSSGVFNPYAAATGPSSTPGRSAVAST
RARVRNPYSASTLSATSSAAETVGTARSESQQSVAQSRSYGSSGEQGRPR
GGETRVPAFQDLEDDDGPGFEYLEEPDFDDEEDDDEPPEEAATAAAAVRN
GRNPGMLSDPPRVSASTERSSPTAAAVTPRTTIVSARVQKEKLRQEQEEE
SRKRRRGRGEGGGSGGGDGEVADIEGEFGGVGRSRTELEVSSRSKRGRSS
SEIGSRAGGDRERRNETRPSPSSGPYTSLEDLDRFAAAGGGMFRVKAVVS
DTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQ
ADPEKAISIQTRVEKEIREMEGVMEIQTSAGATSSQSPATPGAMSQNSAT
GDSEWGLPMVVSVKPPTDGDCHELLSRVTSLL*
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mRNA from alignment at Ecto-sp13_S_contig7359:1057..6888+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7359.18527.1 ID=mRNA_Ecto-sp13_S_contig7359.18527.1|Name=mRNA_Ecto-sp13_S_contig7359.18527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7359:1057..6888+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCAGACAGCGACACGGGTTCGGCAGAGCATGGCCGGGCTTGGAGT
CCACCTGCGGCTGGACTGGGTTAAGCACTGCCTCGAAGCAGGGGGAGGCA
TGGACCCTGGTGCAAGCGGCAACGGCCAGCGACAGCAGTCAGAAGCACAA
GAGGGGGTGTATAGGACGTTTCTGGCCTGCGATCTCCGGGAGGTGGGCGA
GGCGTGTCTTCCCGCCGGGGTCGGGGGTATGGTGAAGGAGCGGGTGAAGG
GCAAGATGGTGGTTCAGGTACGCGAAGGTAGACTCTCTTCTTTGAGCCTC
TAGAACTAGACCTGGGCTCGATGAGCCAAGTAGTTTACACCTGGGAACTG
TACCCCACTTCTGCTGTCGCCCGGTTGTGGCCGCCATGAAGGTTTCGGCG
CCCTTAAGTCCACACCTGCACGTTCAGAGGTCAACCTTACGGGATGTTTT
TGCCTCGGCTTTACGTCTCCTTCCCGCGAGCCGTACATCGTCGCAAGGCT
GGACGATGGACCTTGCTTAGATGTCCATAGTGTTCTGCGTGTGCGCCGCA
AACACGTCGTGCGCAATATATATTGCTCTCCCTTGTCTGGGCCTTTCCCC
CACCGTGTCTTTATCACAACGACAGGACAGGCAACGCTCACCTCGGCAAC
GCCGTTCGTCCGTTCATTCGTTCGTTTGTTCGCTGCTCCACCAGGTAGAG
AACGCCAGGGACATAGCGAAAAACTTGGAGCAAAGGGAGAAGGTGGACGG
CTCGTCCGCCCACCACACTCTCAAGCTTGCATTGGGGGACGGCAGGCAAA
CGGTACGACATGGAGGATGATGATGAAGAAGGCAACCGCCTCGTTGGTTT
CTTGTGATAAGGTCTCTTCGAATGATGGCGGTTTGTCAAGACATGCTCAC
TCTGTGTCTGCTTGAGGATAGGTGTTTTCAAGGCTCCGATTCATGTAAAT
ACCGTGAACAACGAGGCGATCCCCCCCCCCCCCGGGCCTAAAATTGACGG
TTACAATGCCCGCCCAGACGGGGGAATGCACACAGCTAGCTTTTGCCTCC
CTCGTGTCTACACAATGCGTGCATTCACCTGCAGGCTTATTTGAAATGTC
GCATAAGCTTCCGGCAACAGCCCAATTGCCCCGCGTCGTCCGTTCCAAGT
CTTGCGTGTATTCTCTGAGCTTGAGGTATACCGCTCCGGAGCGCTCACTA
CTGCTGTATTCAGAGACTGCTGTCGGTCTTATTCTGTTTGTCATACCCCT
GTCGTTGGTCTTGTCCTGGTTCCTTTGTTGTGGGCCAACAGGTTGCGGCT
TTCGAGTACAAGCGTGTTCAGGGGTTGGTGGCAGACCCTCCACTAGGCCT
CAAGCTCCTCCTGGTGGAGCCATGGGTTAGAAGAGGCATCCTGCTTCTCT
CCTCGGACAACACCATCGTACTAGGCGGCGAGGTGTGAAAATGTTAGGGA
GGGGTACGGAGCGGAAAGCTTACCGGCGTGTCGTCGTCCTGGCATGAATT
GTTCGGAGGCGGGCCGGCGCAGCCTTAGGGGTCGACAACCCGAGGCAACC
GTTTGGTCTGCACTTGCCCATGGTGTGACGAGGGGTCACGCAACATCACG
TGCGTACAGGGAGCCTTTCGTCCAGTGTGAAGAAACGAAGCGTTGTTGCC
CTACGCACGTTCTCACCCAAGTACGACTCCAGAACTGAACAGCAGCGAGG
TTGCGGTAGAACGACGCCAGCCCCCCGACCTACACCCCATTTGTTCGGCA
GGCACGTTCCGCGTTCCGTGCGTAGCGCGTAGCCCAAGCAACACGAGGCA
CAAAAGCCGTCAGCGCGAACACCCTTCTCCCCGTAAACTCTGTCGGTGCG
TAGTAGGGTGGCTTATTTTCAACTCGTGTTGTATTGTGATAATTGTGTCG
GACTGCCAGGTGTCTAGCCTCGTGGAGGCGAGAGAGACCGCTCGTGCTGG
CGGCGCGCAGAGCACGGCAGGCGCTGCCACCAATGCCACGAACAACGACG
ATACTGTGGAGCCCCGCACAAGCCGAAATCAGCCGGGGGAGCCACCCGGT
CGAACCGCTACCGACTCCGGTGCCGCCGGCAACAGCGGCCCACGGGCACG
CGCGCCACGGAACGCAACGAGGGCTCAGGCAGAGAATAGCGGGTGGCCGC
GACCACCCCAGCCAGGAGGCAGTCACCGACACGACGAGAACGCTGACCCT
AGTGGCGTGGTGGACTTATCGTCGTCGTCGTCGTCGTCAGGAGGCAACGC
GGACACACCGTTATCATCCCAGGGCCGACGAGCCGACGACACAGAAGGGC
GGCAGCGGTCGAGGTCCGCCTCGGGGAACGGGGGGGTTGTTGGTAGCAGC
AGGCCGAGCGGGTCTAGCTCCGGTGTATTCAATCCGTACGCCGCCGCGAC
AGGGCCTAGTTCGACTCCTGGAAGGTCGGCGGTTGCTTCCACTAGAGCCC
GAGTCCGCAACCCCTATTCCGCCTCGACGCTCTCTGCTACTAGCTCAGCA
GCAGAGACGGTCGGGACGGCGCGAAGCGAGAGTCAGCAGAGCGTAGCCCA
GAGTAGAAGTTATGGTTCAAGTGGCGAGCAGGGGAGACCACGAGGCGGAG
AGGTAAGTGTCGATGGAGAGAACGGCTTTTTTGCCAAATATCCATGATCG
CACGGCCCCTCGTGCAGTACCTGCGGCGTAGGACGCACCAATGTTTTAAC
ACCTTACCCGTGGTAAACCTTCTCCACGCTTCCTGCCGACCCACCCGTCT
TCCGTCATTCCCCTCTCTCCTTAACGCGTTCCTGTTCTTCGGCATAGGAC
TGATATACCCGAAACGAACCCATCCACCCATGTATCTCCCCATACGCTCG
CTCGTGTTAATTGTTCGCAGACGCGGGTTCCCGCGTTCCAAGACTTGGAG
GACGATGACGGACCGGGGTTCGAGTATCTGGAAGAACCAGACTTCGACGA
CGAAGAAGACGACGACGAACCCCCGGAAGAGGCTGCTACTGCTGCTGCTG
CCGTCCGCAACGGAAGAAACCCGGGGATGCTAAGCGATCCTCCCCGGGTT
TCGGCGTCGACCGAAAGATCTTCTCCGACGGCGGCGGCGGTAACCCCTCG
AACGACGATCGTCTCGGCGAGGGTGCAGAAGGAGAAACTTAGACAAGAGC
AGGAGGAGGAATCGCGGAAACGGAGGAGAGGGCGGGGCGAGGGCGGCGGT
AGTGGTGGCGGCGACGGGGAAGTCGCCGACATCGAGGGAGAGTTCGGCGG
TGTAGGGAGGAGCCGAACTGAGCTGGAGGTTTCTTCGCGGAGTAAGCGCG
GCCGGAGCAGCAGCGAAATCGGCAGCCGAGGTGAAAAAGAAGCGTTGCCA
GCGAAAAGGAAAGGCTGTTCCACCGGCCGAGGAGATGCGGTAGATTCGCC
GCGCCTTTACATTTGAAACGGCGAGGAAGGCGGGTGCTATGCCTTTTTCG
TGTCGCATGACAAGCATCACGTAGGTTGGACTATTTCTACAGGTGTAGGT
TGGACTACTTCTATTGGTGTAGGTTGGACTACTTCTATTGGCGTAGTCGC
AACTCAAGTGAGGCTTCGTCTCTAATCGACATTTATGAATCATTAAATGA
GTCCTCAACTTTCTGCGTTACGCTGTCTCCACGAAACGCTGAATGGATAC
GTAGTCTCACACCCGACAACTTGGAACCGAACAACACCGCACCTACGGTG
GTGGTTTATCGGCTTTGTTCTCGACCTCACTTGGCCTGTTTCAAAACGAT
GGCAGCAGGAGGCGACCGTGAACGGAGAAACGAGACTAGGCCGTCTCCGT
CTAGCGGCCCGTACACGTCCTTGGAGGACCTGGATCGGTTCGCCGCCGCG
GGAGGGGGTATGTTTCGCGTCAAGGCCGTCGTGTCTGACACAAAGAACTG
CAAGATCCGCAAGAAAAAGTACCTGGTGAGTCTAGGGGGGTTAAGTTCGG
CATGGTTAAGTGTTGCGTCAGTGTTGTCGTTCGGTAAAAGGCGTGTTCTT
CTAAGGTCGATTCACGCGTGGAGCATTGTAGATGATAAATGTGGTTTGGG
GGTACAGTTGCGGGAGCTTCCGTTTTGAATGATGACTGGGTGCCTCCAAC
ATGGGCATGTATCACGTCTAACGTGGTCCACACGACTTTTTTATCGTGCT
CCCCGGAGGAACGCATTTGAAAGAAATAACGTATACCATGTTCTAGCGCA
AGAATACGCAAGGAAATTGCAGCAATACATACAGTAGATGGCTTTCGGCA
GGGTGCACCCGTGCGCGTCGAATTACTTGACCGGTGCGTGCTTTATCCAC
GTGCTTGGGTGCGAGGTAGTCACTGGTTCTTGCAGCAACATGGGCCAGAG
AGAGCTGCGTGTCTGTCAAGGTGGCGAGACCTTCGTCTACGTCTATCCTT
GACTTGCACTACAGTACCCGAAAAAAATGCCCCATGTTATCAAGAGAACA
TTAGTCTTGTACGATGCATGTTACCGTGCAAGGCGGCGGCGCGGTACGGA
ACGTGTCAACGCCTCCTGGTCGTCCTCCACCCCGCCGCCCCCGTGCCCTG
CTGACCATTCTCACGCCTGCCACGAACAACTTGGCGACGACAGCTTGTGG
TCGAGATCGAGGACGGCACGGCTGTCGTTAGCGTTCGCCTCTCGGAGCAA
ATCACCAGGCGCCTATTCGGGGTGGAAGCACGGGAGTTCAAGAAGATCTT
CCAGGCGGATCCCGAGAAGGCGATAAGCATCCAGGTACAGCAGTAGTCGT
GGTGCCTGTGAAGGCCGCACAATACTGCCAAGGGATTTGGCCGGCTAGCA
CCGGACACCCAGCACTAGTCAGAGCATGAAACTACTTGAGTTGTATTCTA
TGTGTTTCAAGCCACTTCACTGGCCTTATGATTTACTCGGGACTACGGTC
CTCATTTTGGCGGCCTTATATCATACAGGGACCATCGCTGCTGAACGAGT
GTTCCGCCGCATAATTCGGGTGATGACTCCCCTCCGTCTCTCTTTTTTTG
CCGAAAATCACCAGACTCGTGTGGAGAAGGAAATCCGGGAGATGGAAGGC
GTTATGGAAATCCAAACTTCCGCCGGGGCAACGTCCTCGCAATCCCCGGC
AACACCCGGCGCCATGAGCCAGAACTCTGCGACGGGCGACTCGGAGTGGG
GTCTGCCCATGGTGGTATCGGTGAAACCTCCGACTGACGGCGATTGCCAC
GAGCTTCTCTCACGCGTGACGTCATTGTTGTAGCCCTTTGTCGGGCCGGC
CTGACTTCGCAACCTTGACCGGTTGTTGCTGCTGCCGCACGCCATGTACA
TAAGGTATTGCTACGGTCGGGTTTGAGGTCCACGTCAGTGACTGGGGCCT
GGGTTTGCGGTCCTCTTGAGGTGTTCGGAGGGGCTTCGAACGACTGGATC
TCCTGTTGATGTTCATCGCCTCAAGCTTTCCTCCAAAGGTGGGGGTCGTG
GGTTCAGACCAGACAGTACCGCATGGAATGCTTTCGAAGCGAGCTTGGAG
GCGAATCTTGTAGGTCGGGCTACGAATACGTTCGTTCCCATCAACCTTCA
AGGCTTTATTCATCAACCTCCAAGCCTTTGGGGATAAGGGGCCGTGCGGT
GTGAAGTCGTGATCCACTTGTTCAAAGAACACATGTACAGGTTTTTTATC
CAGAAAGGTCTGCGATTTTGTGCATGAGGCCGGTGGGCGACAATTTCTTT
CTAGTTCGAGAGAAAGGACATCGGGCAAGGTTAGGGTTTTAGTGGTGATG
CGCCGTGCTTTGCAACTTCCGTTGATGGATATTGTTATCTCGGAGGGACG
GAGAACGAACTTTCCTCGCCAGAAGAACACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7359:1057..6888+

>mRNA_Ecto-sp13_S_contig7359.18527.1 ID=mRNA_Ecto-sp13_S_contig7359.18527.1|Name=mRNA_Ecto-sp13_S_contig7359.18527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7359:1057..6888+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCAGACAGCGACACGGGTTCGGCAGAGCATGGCCGGGCTTGGAGT
CCACCTGCGGCTGGACTGGGTTAAGCACTGCCTCGAAGCAGGGGGAGGCA
TGGACCCTGGTGCAAGCGGCAACGGCCAGCGACAGCAGTCAGAAGCACAA
GAGGGGGTGTATAGGACGTTTCTGGCCTGCGATCTCCGGGAGGTGGGCGA
GGCGTGTCTTCCCGCCGGGGTCGGGGGTATGGTGAAGGAGCGGGTGAAGG
GCAAGATGGTGGTTCAGGTAGAGAACGCCAGGGACATAGCGAAAAACTTG
GAGCAAAGGGAGAAGGTGGACGGCTCGTCCGCCCACCACACTCTCAAGCT
TGCATTGGGGGACGGCAGGCAAACGGTTGCGGCTTTCGAGTACAAGCGTG
TTCAGGGGTTGGTGGCAGACCCTCCACTAGGCCTCAAGCTCCTCCTGGTG
GAGCCATGGGTTAGAAGAGGCATCCTGCTTCTCTCCTCGGACAACACCAT
CGTACTAGGCGGCGAGGTGTCTAGCCTCGTGGAGGCGAGAGAGACCGCTC
GTGCTGGCGGCGCGCAGAGCACGGCAGGCGCTGCCACCAATGCCACGAAC
AACGACGATACTGTGGAGCCCCGCACAAGCCGAAATCAGCCGGGGGAGCC
ACCCGGTCGAACCGCTACCGACTCCGGTGCCGCCGGCAACAGCGGCCCAC
GGGCACGCGCGCCACGGAACGCAACGAGGGCTCAGGCAGAGAATAGCGGG
TGGCCGCGACCACCCCAGCCAGGAGGCAGTCACCGACACGACGAGAACGC
TGACCCTAGTGGCGTGGTGGACTTATCGTCGTCGTCGTCGTCGTCAGGAG
GCAACGCGGACACACCGTTATCATCCCAGGGCCGACGAGCCGACGACACA
GAAGGGCGGCAGCGGTCGAGGTCCGCCTCGGGGAACGGGGGGGTTGTTGG
TAGCAGCAGGCCGAGCGGGTCTAGCTCCGGTGTATTCAATCCGTACGCCG
CCGCGACAGGGCCTAGTTCGACTCCTGGAAGGTCGGCGGTTGCTTCCACT
AGAGCCCGAGTCCGCAACCCCTATTCCGCCTCGACGCTCTCTGCTACTAG
CTCAGCAGCAGAGACGGTCGGGACGGCGCGAAGCGAGAGTCAGCAGAGCG
TAGCCCAGAGTAGAAGTTATGGTTCAAGTGGCGAGCAGGGGAGACCACGA
GGCGGAGAGACGCGGGTTCCCGCGTTCCAAGACTTGGAGGACGATGACGG
ACCGGGGTTCGAGTATCTGGAAGAACCAGACTTCGACGACGAAGAAGACG
ACGACGAACCCCCGGAAGAGGCTGCTACTGCTGCTGCTGCCGTCCGCAAC
GGAAGAAACCCGGGGATGCTAAGCGATCCTCCCCGGGTTTCGGCGTCGAC
CGAAAGATCTTCTCCGACGGCGGCGGCGGTAACCCCTCGAACGACGATCG
TCTCGGCGAGGGTGCAGAAGGAGAAACTTAGACAAGAGCAGGAGGAGGAA
TCGCGGAAACGGAGGAGAGGGCGGGGCGAGGGCGGCGGTAGTGGTGGCGG
CGACGGGGAAGTCGCCGACATCGAGGGAGAGTTCGGCGGTGTAGGGAGGA
GCCGAACTGAGCTGGAGGTTTCTTCGCGGAGTAAGCGCGGCCGGAGCAGC
AGCGAAATCGGCAGCCGAGCAGGAGGCGACCGTGAACGGAGAAACGAGAC
TAGGCCGTCTCCGTCTAGCGGCCCGTACACGTCCTTGGAGGACCTGGATC
GGTTCGCCGCCGCGGGAGGGGGTATGTTTCGCGTCAAGGCCGTCGTGTCT
GACACAAAGAACTGCAAGATCCGCAAGAAAAAGTACCTGCTTGTGGTCGA
GATCGAGGACGGCACGGCTGTCGTTAGCGTTCGCCTCTCGGAGCAAATCA
CCAGGCGCCTATTCGGGGTGGAAGCACGGGAGTTCAAGAAGATCTTCCAG
GCGGATCCCGAGAAGGCGATAAGCATCCAGACTCGTGTGGAGAAGGAAAT
CCGGGAGATGGAAGGCGTTATGGAAATCCAAACTTCCGCCGGGGCAACGT
CCTCGCAATCCCCGGCAACACCCGGCGCCATGAGCCAGAACTCTGCGACG
GGCGACTCGGAGTGGGGTCTGCCCATGGTGGTATCGGTGAAACCTCCGAC
TGACGGCGATTGCCACGAGCTTCTCTCACGCGTGACGTCATTGTTGTAG
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