prot_Ecto-sp13_S_contig7357.18526.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7357.18526.1
Unique Nameprot_Ecto-sp13_S_contig7357.18526.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length194
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7357.18526.1 vs. uniprot
Match: D8LMB9_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB9_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 5.460e-129
Identity = 177/194 (91.24%), Postives = 183/194 (94.33%), Query Frame = 0 
Query:    1 SHVRCFRCGQRGHSTPTCRVEKSHLPSRCDTCLGFGHDASVCTSEAEPAVEVPPLKEKAAFSEEVAMERAQQPGKLDAGGPVEVEEVVRRCNPEDFVFGSAAAYHCLATADGIRNYRTCTGTLRDAAWNPIQVVGCGDLVVSFPSDTGRVNLTLKNVKHVPQVSHNIISTGCLVDEGHTFQFDRNGTMLNLPGG 194
            SHVRCFRCGQRGH TPTCRVEKS LP+RCDTCLGFGHDASVCTSEAEP++E PPLKEKAAFSEE  +ERAQ+PGKLD GGPVEVEEVVR CN EDFVFGSAAAYHCLATADGIRNYRTCTGTL DAAWNPIQ+VGCGDLVVSFPSDTGRVNLTLKNVKHVPQVS NIISTGCLVDEGHTFQFDRNGTMLNL GG
Sbjct:  112 SHVRCFRCGQRGHFTPTCRVEKSDLPARCDTCLGFGHDASVCTSEAEPSIEAPPLKEKAAFSEEAVVERAQRPGKLDLGGPVEVEEVVRLCNTEDFVFGSAAAYHCLATADGIRNYRTCTGTLCDAAWNPIQIVGCGDLVVSFPSDTGRVNLTLKNVKHVPQVSRNIISTGCLVDEGHTFQFDRNGTMLNLAGG 305
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BLAST of mRNA_Ecto-sp13_S_contig7357.18526.1 vs. uniprot
Match: UPI00064DBE39 (retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DBE39)

HSP 1 Score: 53.1 bits (126), Expect = 7.620e-5
Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 0 
Query:   84 VEEVVRRCNPEDFVFGSAAAYHCLATADGIRNY---RTCTGTLRDAAWNPIQVVGCGDLVVSFPSDTGRVNLTLKNVKHVPQVSHNIISTGCLVDEGHTFQFDRNGTMLNLPGG 194
            V  V+   +  +++  SA +YH     +   +Y   + C  TL D     I V G G + + F S  G V LTLKNV+HVP +SHN+IS   L D+G  F+ D     +N+  G
Sbjct:    5 VNSVLASLSENEWLLDSACSYHMTPRREVFSDYVQMKNCGVTLADGTM--IVVNGIGTVCLKFVS--GSV-LTLKNVRHVPTLSHNLISCAVLEDDG--FRGDWGDGCMNIMKG 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7357.18526.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB9_ECTSI5.460e-12991.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI00064DBE397.620e-535.09retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 28..44
e-value: 1.6
score: 10.0
coord: 4..20
e-value: 0.072
score: 18.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 4..19
score: 9.175
NoneNo IPR availableGENE3D4.10.60.10coord: 1..52
e-value: 1.6E-6
score: 29.9
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 2..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7357contigEcto-sp13_S_contig7357:113..694 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7357.18526.1mRNA_Ecto-sp13_S_contig7357.18526.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7357 113..694 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7357.18526.1 ID=prot_Ecto-sp13_S_contig7357.18526.1|Name=mRNA_Ecto-sp13_S_contig7357.18526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
SHVRCFRCGQRGHSTPTCRVEKSHLPSRCDTCLGFGHDASVCTSEAEPAV
EVPPLKEKAAFSEEVAMERAQQPGKLDAGGPVEVEEVVRRCNPEDFVFGS
AAAYHCLATADGIRNYRTCTGTLRDAAWNPIQVVGCGDLVVSFPSDTGRV
NLTLKNVKHVPQVSHNIISTGCLVDEGHTFQFDRNGTMLNLPGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf