mRNA_Ecto-sp13_S_contig7349.18515.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7349.18515.1 vs. uniprot
Match: D7G8L6_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L6_ECTSI) HSP 1 Score: 707 bits (1824), Expect = 9.210e-250 Identity = 350/382 (91.62%), Postives = 364/382 (95.29%), Query Frame = 2
Query: 995 PTNPTTSTCIVSDSTNNSIGLSDPVAQRDAPDVETGEKSDTFSTSEAEDTRPIPRDRYRHCTFCSVCEKPRTEPKAVAKCESCPRVFCRKCAGREGETVPKAKYADDVVLPLHKCLCQTKDSEFPKPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKQRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGYKPGSSDDRAGIVTCTLILETMIEKYYADFMEQQELVVDEGSWQAGRERRKREQFARIAQTPLNPALWPNGSCADQLDPVDGTDEETVSDDENMRIGDSICHKRKFGSESSEGQAALNTTAHASNSSAPLVDGAGSSAGGRVACNVEGLDQNMCALAAIGETLGGSSSKR 2140
PTNPTTST IV DSTNNS G+S+PVAQRD PDVETGEKSDTFSTSEAEDTRP PRDRYRHCTFCSVCEKPRTEPKAVAKCE+CPR+ CRKCAGREGETVPK KYADDVVLPLHKCLCQTKDSEFP+PKKGKDPQAHLLKHLLRHDLSVMFREPVDVE NPGYLGVVTREDMMDLGTMK+RLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGYKPGSSDDRAGIV CTLIL+TMIE+YYAD+MEQQELVVDE SWQAGRERRKREQFARIA TPLNPALWPNG+CADQLDPVDG+DEET SDDENMR+GDSICHKRKFGS+ SE QAALNTTAHAS SSAPLVDG GSSAG RVACNVEGLDQNMCALAAIG+ LGGSSSKR
Sbjct: 26 PTNPTTSTSIVRDSTNNSTGVSEPVAQRDTPDVETGEKSDTFSTSEAEDTRPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETVPKTKYADDVVLPLHKCLCQTKDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVETNPGYLGVVTREDMMDLGTMKRRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGYKPGSSDDRAGIVMCTLILKTMIERYYADYMEQQELVVDERSWQAGRERRKREQFARIAHTPLNPALWPNGTCADQLDPVDGSDEETDSDDENMRLGDSICHKRKFGSDDSEEQAALNTTAHASISSAPLVDGGGSSAGVRVACNVEGLDQNMCALAAIGKNLGGSSSKR 407
BLAST of mRNA_Ecto-sp13_S_contig7349.18515.1 vs. uniprot
Match: A0A6H5LCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCM5_9PHAE) HSP 1 Score: 575 bits (1483), Expect = 5.230e-197 Identity = 335/554 (60.47%), Postives = 355/554 (64.08%), Query Frame = 2
Query: 2 SAAEICLLKSQVNELKNQVEIFRADGRQAAAEAACRPFPISGLTGISSGADSRGNTAVADTCNPLAFVKTSGAAAYPDHIPLEDREAIRSRMLRDRGPQERHELRQPSAVDTQAATHESCLPSPSRPAGLEPFLPEDDTASNGATSPQPEQRQEIEAADHDSEETEDECLDRHIETDGDDDDDLSDHEPLLSPNSANTVASRVDFGWDGKQEPRAQEDGEEPREPRLCGEARMSPPSTPAAAVEQAVIPRLPAVKTEAESALVDHRGRDVQAAGSPLLNTVEASTSQGSETAGGVTTPPFVKNDTVPGGSIHTSPARDVGACYKHQLFSASPTNPTTSTCIVSDSTNNSIGLSDPVAQRDAPDVETGEKSDTFSTSEAEDTRPIPRDRYRHCTFCSVCEKPRTEPKAVAKCESCPRVFCRKCAGREGETVPKAKYADDVVLPLHKCLCQTKDSEFPKPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKQRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGYKPGSSDDRAG 1663
SAAEICLLKSQVNELKNQVEIFRAD RQAAAEAACRPFPISGLT I+SGA+ RGNTAVADT NPLAFV T+GAAAY DHIPLEDREAI RHIETDGDDDDD SDHE LSPNS NTVASR+ FGWDGKQEPRAQ+DGEEPREPRLCGEAR++P ST AAA EQAVIPRL VKTEAESAL DHRGRDVQA+GSPLLN+VEASTSQ +PTNP TST IVSDSTNNS GLSDP+AQRDAPDVETGEKSDTFS SEAEDTR IPRDRYRHCTFCSVCEKPRTEPKAVAKCE+CPR+ CRKCAGREGET+PKA+ + EFPKPKKGKDPQAHLLKH++RH V DLGTM++RL KKKQYQSPRGQ KFRTDLEK WV CWKYAGYK GSSDDRAG
Sbjct: 41 SAAEICLLKSQVNELKNQVEIFRADSRQAAAEAACRPFPISGLTRIASGANGRGNTAVADTYNPLAFVNTAGAAAYTDHIPLEDREAI-----------------------------------------------------------------------------------RHIETDGDDDDDFSDHELPLSPNSVNTVASRICFGWDGKQEPRAQQDGEEPREPRLCGEARLAPRSTSAAADEQAVIPRLAGVKTEAESALRDHRGRDVQASGSPLLNSVEASTSQ-------------------------------------------APTNPITSTYIVSDSTNNSTGLSDPIAQRDAPDVETGEKSDTFSASEAEDTRSIPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETLPKAR---------------RRTQEFPKPKKGKDPQAHLLKHIVRHGHDV------------------------DLGTMEKRLFKKKQYQSPRGQPKFRTDLEKFWVKCWKYAGYKAGSSDDRAG 429
BLAST of mRNA_Ecto-sp13_S_contig7349.18515.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI) HSP 1 Score: 135 bits (341), Expect = 2.160e-29 Identity = 83/230 (36.09%), Postives = 120/230 (52.17%), Query Frame = 2
Query: 1160 DRYRHCTFCSVCEKPRTEPKAVAKCESCPRVFCRKCA--------------GREGETVPKAKYADDVVLPLHKCLCQTKDSEFPKPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKQRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGY----KPGSSDDRAGIVTCTLILETMIEKYYADFME--QQELVVDEGSWQAGRERRKRE 1789
DR H C+ C+ E + +CE CPR FC +C G++ ++ K D + +C + KD+EF P G P HLL LLRHDLS+ FREPVD+ +P Y+ + R MMDLGTM +L + K+Y RG +F+ DL +IW NC ++AG +P + GIV C L LE M +K+ + +M Q+ E +W R+R++RE
Sbjct: 332 DRSSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSLLNGKQGDISIARCPECF-RGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKL-QGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQESTWDFHRQRQERE 559
BLAST of mRNA_Ecto-sp13_S_contig7349.18515.1 vs. uniprot
Match: A0A7S1V5M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5M0_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 9.780e-5 Identity = 38/117 (32.48%), Postives = 59/117 (50.43%), Query Frame = 2
Query: 1274 REGETVPKAKYADDVVLPLHKCLCQTKDSEFPKPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKQRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKY 1624
+E + KA+ ++V P+ +CL +L H+ + +F EPVD E P Y +V + MDLGT++++LLKKK YQ+P + F D+ K+W NC Y
Sbjct: 346 KEKALLAKAQKPNEVWQPMRRCL-------------------KVLDHIAEDSFADIFLEPVDTEDFPDYEDIV--DQPMDLGTVREKLLKKK-YQAP---ENFARDVRKVWNNCKVY 437 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7349.18515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7349.18515.1 >prot_Ecto-sp13_S_contig7349.18515.1 ID=prot_Ecto-sp13_S_contig7349.18515.1|Name=mRNA_Ecto-sp13_S_contig7349.18515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=623bp MLRDRGPQERHELRQPSAVDTQAATHESCLPSPSRPAGLEPFLPEDDTASback to top mRNA from alignment at Ecto-sp13_S_contig7349:2..3343- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7349.18515.1 ID=mRNA_Ecto-sp13_S_contig7349.18515.1|Name=mRNA_Ecto-sp13_S_contig7349.18515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7349:2..3343- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7349:2..3343- >mRNA_Ecto-sp13_S_contig7349.18515.1 ID=mRNA_Ecto-sp13_S_contig7349.18515.1|Name=mRNA_Ecto-sp13_S_contig7349.18515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1869bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7349:2..3343- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |