mRNA_Ecto-sp13_S_contig73480.18514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73480.18514.1
Unique NamemRNA_Ecto-sp13_S_contig73480.18514.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.760e-28
Identity = 55/96 (57.29%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEGGFFKAKLEFPKDFPNNPPTMTF+SEMFHPN                                       +YPDGRVCISILHPPGEDKFNEQ
Sbjct:   48 LYEGGFFKAKLEFPKDFPNNPPTMTFISEMFHPN---------------------------------------VYPDGRVCISILHPPGEDKFNEQ 104          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A1D3CZE9_9EIME (Ubiquitin-conjugating enzyme subfamily protein n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3CZE9_9EIME)

HSP 1 Score: 100 bits (250), Expect = 3.500e-24
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSV-----VDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQVR 294
             YEGG F+A L+FP DFPNNPP M F  +M+HPNG+E  L   G  DC   +      V  +   S  V+  P     ++PDGRVCISILHPPG D FNEQ +
Sbjct:   48 FYEGGIFQASLKFPPDFPNNPPEMVFEQDMWHPNGRENWLGRVGQWDCSFSTASYSRQVGALYSPSAFVFLLP----SVFPDGRVCISILHPPGHDMFNEQEK 146          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A1Z5KCD4_FISSO (Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCD4_FISSO)

HSP 1 Score: 90.9 bits (224), Expect = 2.030e-21
Identity = 47/96 (48.96%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEGGFFKAKL FP DFPN PPTMTF SEM+HPN                                       +Y DG+VCISILHPPGED+FN+Q
Sbjct:    7 LYEGGFFKAKLVFPPDFPNMPPTMTFTSEMWHPN---------------------------------------VYTDGKVCISILHPPGEDEFNQQ 63          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A1Z5JLS8_FISSO (Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5JLS8_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 2.070e-21
Identity = 48/96 (50.00%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEGGFFKAKL FP DFPN PPTMTF SEM+HPN                                       +Y DGRVCISILHPPGED+FN+Q
Sbjct:   48 LYEGGFFKAKLVFPPDFPNMPPTMTFTSEMWHPN---------------------------------------VYTDGRVCISILHPPGEDEFNQQ 104          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A2R5G2R2_9STRA (Ubiquitin-conjugating enzyme family protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2R2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.160e-21
Identity = 47/96 (48.96%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEGGFFKA LEFP D+PNNPPTM FV+ + HPN                                       +YPDG+VCISILHPPGEDKFNEQ
Sbjct:   60 LYEGGFFKALLEFPPDYPNNPPTMRFVTPILHPN---------------------------------------VYPDGKVCISILHPPGEDKFNEQ 116          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.650e-20
Identity = 46/96 (47.92%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYE G FKA LEFPKDFPN+PPTMTF S+M+HPN                                       +Y DGRVCISILHPPGED+FN+Q
Sbjct:   48 LYEEGLFKATLEFPKDFPNSPPTMTFTSDMWHPN---------------------------------------VYEDGRVCISILHPPGEDRFNDQ 104          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A4D9D8W7_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-20
Identity = 46/96 (47.92%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEGGFFKA+L FP DFPN PPTMTF +EM+HPN                                       +Y DGRVCISILHPPGED+FN Q
Sbjct:   47 LYEGGFFKARLTFPSDFPNMPPTMTFQTEMWHPN---------------------------------------VYEDGRVCISILHPPGEDRFNSQ 103          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A024UPR9_9STRA (UBC core domain-containing protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UPR9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.100e-20
Identity = 46/96 (47.92%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEG FFKA+LEFPKDFPN PP MTFVSEM+HPN                                       +YP+G VCISILHPPGED+ N Q
Sbjct:   47 LYEGAFFKARLEFPKDFPNMPPKMTFVSEMWHPN---------------------------------------VYPNGVVCISILHPPGEDRMNAQ 103          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A7S2AVY1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVY1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.180e-19
Identity = 46/96 (47.92%), Postives = 50/96 (52.08%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            +YEGGFFKA LEFP DFPN PP M FVSEM+HPN                                       +Y DGRVCISILHPPGEDK+N Q
Sbjct:   58 MYEGGFFKATLEFPPDFPNMPPEMRFVSEMWHPN---------------------------------------VYADGRVCISILHPPGEDKYNAQ 114          
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A067CW50_SAPPC (UBC core domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW50_SAPPC)

HSP 1 Score: 86.7 bits (213), Expect = 2.570e-19
Identity = 44/96 (45.83%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
            LYEGGFF+A+LEFPKDFPN PP MTF+S+M+HPN                                       +YP G VCISILHPPGED+ N Q
Sbjct:   47 LYEGGFFRARLEFPKDFPNMPPKMTFISDMWHPN---------------------------------------VYPSGVVCISILHPPGEDQMNAQ 103          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV8_ECTSI4.760e-2857.29UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A1D3CZE9_9EIME3.500e-2449.51Ubiquitin-conjugating enzyme subfamily protein n=1... [more]
A0A1Z5KCD4_FISSO2.030e-2148.96Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistuli... [more]
A0A1Z5JLS8_FISSO2.070e-2150.00Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacilla... [more]
A0A2R5G2R2_9STRA2.160e-2148.96Ubiquitin-conjugating enzyme family protein n=1 Ta... [more]
A0A836CP86_9STRA1.650e-2047.92Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A4D9D8W7_9STRA2.280e-2047.92UBC core domain-containing protein n=1 Tax=Nannoch... [more]
A0A024UPR9_9STRA9.100e-2047.92UBC core domain-containing protein n=7 Tax=Saprole... [more]
A0A7S2AVY1_9STRA1.180e-1947.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CW50_SAPPC2.570e-1945.83UBC core domain-containing protein n=3 Tax=Saprole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73480contigEcto-sp13_S_contig73480:10..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size310
Hectar predicted targeting categorysignal peptide
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464003.1773832-CDS-Ecto-sp13_S_contig73480:9..991681464003.1773832-CDS-Ecto-sp13_S_contig73480:9..99Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73480 10..99 -
1681464003.1889215-CDS-Ecto-sp13_S_contig73480:396..4801681464003.1889215-CDS-Ecto-sp13_S_contig73480:396..480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73480 397..480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464003.1991417-UTR-Ecto-sp13_S_contig73480:480..6161681464003.1991417-UTR-Ecto-sp13_S_contig73480:480..616Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig73480 481..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73480.18514.1prot_Ecto-sp13_S_contig73480.18514.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73480 10..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73480.18514.1

>prot_Ecto-sp13_S_contig73480.18514.1 ID=prot_Ecto-sp13_S_contig73480.18514.1|Name=mRNA_Ecto-sp13_S_contig73480.18514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MIVALFLLSMLSLCLRCWCILNPFLPLICTQMGGCAFRSYTHRERTSSTN
RYGCTIH*
back to top

mRNA from alignment at Ecto-sp13_S_contig73480:10..616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73480.18514.1 ID=mRNA_Ecto-sp13_S_contig73480.18514.1|Name=mRNA_Ecto-sp13_S_contig73480.18514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73480:10..616- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTATGAGGGAGGGTTCTTCAAGGCCAAGCTCGAGTTCCCGAAAGACTT CCCGAACAACCCTCCGACCATGACCTTTGTCAGCGAGATGTTCCATCCCA ACGGTAAGGAGCGGTTGCTCTTTGGTGGCGGCGTCCATGATTGTGGCGCT GTTTCTGTTGTCGATGTTGTCGTTGTGTCTTCGATGTTGGTGTATACTCA ACCCATTCTTACCGCTGATTGTGGCTTGTCTTTCTCGGTTGCCGCCGCTT TCTCGAACCATGTTTCGGAGCCGGCGTTGTCCTAGTACACACGTAGACAC GCAAGGGTTGCCTCTTATCATACGGTAGCAGGCGTGGAACGCACTCTGTC GTCTTCTGTCTCTGCATTCACAAAGCGTTGGCTAGTACTTCACATCACAG AGTCCGCCCGAGAGCTTGCTGGGAAGATTTTTTTTTGTCCGCCACGCATC CGCCATTCCCCGCAACGGTTTCATCTCTTTGTTTTTTGACTGCCTTTTTT GTGGACGCTTGCCTCAGTGTACCCAGATGGGAGGGTGTGCATTTCGATCC TACACCCACCGGGAGAGGACAAGTTCAACGAACAGGTACGGATGCACAAT TCACTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73480:10..616-

>mRNA_Ecto-sp13_S_contig73480.18514.1 ID=mRNA_Ecto-sp13_S_contig73480.18514.1|Name=mRNA_Ecto-sp13_S_contig73480.18514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73480:10..616- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGTGGCGCTGTTTCTGTTGTCGATGTTGTCGTTGTGTCTTCGATG
TTGGTGTATACTCAACCCATTCTTACCGCTGATTTGTACCCAGATGGGAG
GGTGTGCATTTCGATCCTACACCCACCGGGAGAGGACAAGTTCAACGAAC
AGGTACGGATGCACAATTCACTAA
back to top