mRNA_Ecto-sp13_S_contig73436.18510.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73436.18510.1
Unique NamemRNA_Ecto-sp13_S_contig73436.18510.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: D7FJG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG7_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.730e-29
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 QAIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            +AIQ FIQEHGRPPVVLDIGQGTGLLSMLAVRAGAE+VYGAELYEPLAQIAREVTTLN
Sbjct:   32 KAIQAFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEDVYGAELYEPLAQIAREVTTLN 89
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A7S1J018_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J018_9EUGL)

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-15
Identity = 30/57 (52.63%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    4 AIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            A++ +++++GRPPVVLDIG GTGLL+M+A RAGA+ VY  E ++ LA++++ +T LN
Sbjct:   78 AVRQYVEQNGRPPVVLDIGTGTGLLAMMAARAGAQHVYACEGFQALAKLSQRITALN 134
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A485LTY3_9STRA (Protein arginine N-methyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTY3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-14
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    7 IQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            I+ FIQEHGR P+VLDIG GTGLL+MLA R GA+ VY  E+++ +A+IA EVT  N
Sbjct:  118 IERFIQEHGRRPIVLDIGTGTGLLAMLAARHGAQHVYACEMFQTMAEIANEVTMDN 173
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A8K1CD02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD02_PYTOL)

HSP 1 Score: 74.3 bits (181), Expect = 4.040e-14
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 AIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            AI +F Q+HGR P VLDIG GTGLLSM A R GAE VY  E+++P+A+IA+ VT  N
Sbjct:  129 AIASFKQKHGRAPTVLDIGTGTGLLSMFAARHGAEHVYACEMFKPMAEIAQNVTADN 185
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A5D6YFX8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFX8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.040e-14
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 QAIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            +AI  F   HGR P+VLDIG GTGLLS+ A R GAE VY  E++EP+A+IA+ VT  N
Sbjct:  121 RAIARFSARHGRAPIVLDIGAGTGLLSLFAARHGAEHVYACEMFEPMAEIAQHVTAAN 178
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A3M6VN45_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VN45_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.540e-14
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 QAIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            +AI TF  EHGR P+VLDIG GTGLLSM A   GAE VY  E++ P+A+IA +VT  N
Sbjct:  125 RAIGTFKAEHGRAPLVLDIGTGTGLLSMFAATHGAEHVYACEMFVPMAEIAEQVTAAN 182
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A5A8CMQ6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CMQ6_CAFRO)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    4 AIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            A+  F   HGR PVVLDIG GTGLLSMLA RAGA  V+  E+YEP+A++AR V   N
Sbjct:  114 AVARFRAAHGRGPVVLDIGAGTGLLSMLAARAGAAAVFACEMYEPMARVARRVVADN 170
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A2P4WYW6_9STRA (Arginine N-methyltransferase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYW6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.620e-13
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 QAIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            +AI TF  E GR PVVLDIG GTGLLSM A   GAE VY  E++ P+A+IA +VT  N
Sbjct:  125 RAITTFKAERGRAPVVLDIGTGTGLLSMFAATHGAEHVYACEMFVPMAEIAEQVTAAN 182
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: M4BCL8_HYAAE (Protein arginine N-methyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCL8_HYAAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.580e-13
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 AIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            AI TF ++H R P+VLDIG GTGLLSMLA + GAE VY  E++ P+A+IA +VT  N
Sbjct:   24 AIATFQEKHNRAPLVLDIGTGTGLLSMLAAQHGAEHVYACEMFVPMAEIAAQVTADN 80
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BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Match: A0A8J4S396_9STRA (Protein arginine N-methyltransferase n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4S396_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.590e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    4 AIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQIAREVTTLN 174
            AI  F +EHGR P+VLDIG GTGLLSM A   GA+ VY  E++ P+A+IA +VT  N
Sbjct:  106 AIAKFKEEHGRAPIVLDIGTGTGLLSMFAATHGADHVYACEMFVPMAEIAEQVTRAN 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73436.18510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG7_ECTSI3.730e-2994.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1J018_9EUGL6.500e-1552.63Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A485LTY3_9STRA1.160e-1462.50Protein arginine N-methyltransferase n=1 Tax=Aphan... [more]
A0A8K1CD02_PYTOL4.040e-1461.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YFX8_9STRA4.040e-1458.62Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VN45_9STRA7.540e-1460.34Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A5A8CMQ6_CAFRO1.400e-1361.40Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A2P4WYW6_9STRA2.620e-1360.34Arginine N-methyltransferase n=2 Tax=Phytophthora ... [more]
M4BCL8_HYAAE3.580e-1359.65Protein arginine N-methyltransferase n=1 Tax=Hyalo... [more]
A0A8J4S396_9STRA3.590e-1357.89Protein arginine N-methyltransferase n=1 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73436contigEcto-sp13_S_contig73436:3..176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score112.1
Seed ortholog evalue8.9e-23
Seed eggNOG ortholog2880.D7FJG7
Preferred namePRMT7
Model size174
KEGG rclassRC00003,RC02120
KEGG koko:K11438
KEGG ReactionR11216
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001650,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006349,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016277,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019918,GO:0019919,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032504,GO:0034622,GO:0034641,GO:0034969,GO:0035241,GO:0035242,GO:0035243,GO:0035246,GO:0035247,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0043021,GO:0043046,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043414,GO:0043933,GO:0043985,GO:0044020,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044728,GO:0044877,GO:0046483,GO:0048609,GO:0050789,GO:0050794,GO:0051098,GO:0051171,GO:0051252,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.peptidyl-arginine methylation, to symmetrical-dimethyl arginine
EggNOG OGsCOG0500@1,KOG1501@2759
EC2.1.1.321
Cds size174
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.6148016-CDS-Ecto-sp13_S_contig73436:2..1761681464002.6148016-CDS-Ecto-sp13_S_contig73436:2..176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73436 3..176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73436.18510.1prot_Ecto-sp13_S_contig73436.18510.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73436 3..176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73436.18510.1

>prot_Ecto-sp13_S_contig73436.18510.1 ID=prot_Ecto-sp13_S_contig73436.18510.1|Name=mRNA_Ecto-sp13_S_contig73436.18510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
QAIQTFIQEHGRPPVVLDIGQGTGLLSMLAVRAGAEEVYGAELYEPLAQI
AREVTTLN
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mRNA from alignment at Ecto-sp13_S_contig73436:3..176-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73436.18510.1 ID=mRNA_Ecto-sp13_S_contig73436.18510.1|Name=mRNA_Ecto-sp13_S_contig73436.18510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73436:3..176- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCATCCAAACGTTCATTCAAGAGCATGGGAGGCCACCTGTGGTTCT
CGATATTGGCCAAGGCACGGGGCTTTTGTCCATGCTGGCCGTTAGGGCCG
GCGCAGAGGAGGTGTACGGGGCAGAGCTCTATGAACCTCTCGCGCAGATC
GCCAGGGAGGTCACAACGCTGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73436:3..176-

>mRNA_Ecto-sp13_S_contig73436.18510.1 ID=mRNA_Ecto-sp13_S_contig73436.18510.1|Name=mRNA_Ecto-sp13_S_contig73436.18510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73436:3..176- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCATCCAAACGTTCATTCAAGAGCATGGGAGGCCACCTGTGGTTCT
CGATATTGGCCAAGGCACGGGGCTTTTGTCCATGCTGGCCGTTAGGGCCG
GCGCAGAGGAGGTGTACGGGGCAGAGCTCTATGAACCTCTCGCGCAGATC
GCCAGGGAGGTCACAACGCTGAAC
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