mRNA_Ecto-sp13_S_contig7342.18509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7342.18509.1
Unique NamemRNA_Ecto-sp13_S_contig7342.18509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7342.18509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7342contigEcto-sp13_S_contig7342:876..6083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1028
Hectar predicted targeting categorysignal peptide
Exons2
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.5496538-UTR-Ecto-sp13_S_contig7342:875..9811681464002.5496538-UTR-Ecto-sp13_S_contig7342:875..981Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7342 876..981 -
1681464002.572066-UTR-Ecto-sp13_S_contig7342:1758..18001681464002.572066-UTR-Ecto-sp13_S_contig7342:1758..1800Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7342 1759..1800 -
1681464002.5833704-UTR-Ecto-sp13_S_contig7342:5980..60831681464002.5833704-UTR-Ecto-sp13_S_contig7342:5980..6083Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7342 5981..6083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.5608494-CDS-Ecto-sp13_S_contig7342:981..17581681464002.5608494-CDS-Ecto-sp13_S_contig7342:981..1758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7342 982..1758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7342.18509.1prot_Ecto-sp13_S_contig7342.18509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7342 982..1758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7342.18509.1

>prot_Ecto-sp13_S_contig7342.18509.1 ID=prot_Ecto-sp13_S_contig7342.18509.1|Name=mRNA_Ecto-sp13_S_contig7342.18509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MSTRALKLRSSFVVLVTATILLQYAGATSSSTSGLCTDESAACSFGSECQ
ECVMTATEAGSECTSSFTSDDWNPCVAYSRLGCCQDSYSANDCMGNSDFV
VLYTCLANYYESILGGGGECSLTCDYGSEDGEVDDDATATGDDGVGDDGA
TETDDGVVGDENATVTDDGGVGNYNATATDDDATATDDDATATDDGGVGN
YNGTATDDGAVTNDDDASDSSANTGGTSGAGNSSPSVMLTSALGLAFLSA
APVFYVLL*
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mRNA from alignment at Ecto-sp13_S_contig7342:876..6083-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7342.18509.1 ID=mRNA_Ecto-sp13_S_contig7342.18509.1|Name=mRNA_Ecto-sp13_S_contig7342.18509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7342:876..6083- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCACGCTGCGTCACTCTTCAGAACGTTGAGACGGAGAGACGTCAGGG
AGAGAGAAGCTCGAGCTGAAGCATCCAAATAACCCAAGCTACCGCTGCTG
AAGGTGTGTTTCCGCTCACCCAACCTCACCCAACCTCCTGAATTTACATG
TACTGCTGTATGCACAGGCTCGACAGCAGTGATTTACTTGTCCCCAACCA
TACCGAACCAAGAACCACCCGCAGCAGTAGTAGCTACTACTTTTGGTCGC
CCCGACTGCTTGACCACCGCAGGTGTTGCGCGTTGGTACTAAGTGTAGAC
TAGTCTAGAAGTAGAGCACCAAACGCTCCTAAGAAAACCGCTCCTCCTTG
CTGCCCCCCCGAAAAAAAAGCGCTCCGAGTCACAACAGTTCTTCAAGTGT
ACCTTGACAACCGTTCTTGCTAGTGGCTGCCAGAGTGTAGCAGAACATTG
GTATGCGTCGGTTCTTCTTGTGTCGCATCAGGGACACTCGTTCCCTGGCA
TGCATGGTCATTAACTTAGGCCGACCGCACACATAAATCGCGACGAGGGG
GGCTGTACAGCTCGACGCTTTGCAGGAAGTAGCCAACAAAATGAACAATT
TGCACCCTACGTTGATGCTGCTGCTTATCTTCCCCGCCCTGCAGTGGTGA
TTTCCGATGGTATTTTAGGGATTTGTAGTGCCACGACCCGCGAAGCGCTT
GTGTTAGACATCAAGATACCAGAAATAAGTTGATAACTTAATAATTATTG
CAGTACGAACCCTGAAAATATTCCACCGCATGCTCGCCGCCCCAGACGAA
CGGTTTCCGTTCACGCTCCTGCTTAATCCCCATTTCAGCAACAGCTAGTC
CTTGGAGGTATCGCGAGTCTCGAACGATTCCCCGTGCTCACGATTTTTTT
CGATCGAACACACGTAGTATTTCCGCCAGCCAGCTTCCTTGACTTCGACG
AAATTCGTCCGTGGGGCCCCCACACCTTCCACCATTAATTCATGTTCTGC
TACCGTTTCATCATTAGTAGTACAGGCGAGGCAACATTCCAATCACTTTG
ATTCAGTATTTCGGAGAGTTCTCACATTCTACGACTTACTACTTCACGTT
CCTAGGTATGTCATTGAAGTGTGCCTGGCCGGTTCCAGAGTTATGCGTGT
CCTGTGTAAACGAAATGACTGATTGTCAAAAAGATATGAATCGATAGAAG
TTCTGGATCACAATCTGGTTCAGACTAAAAACCGTATCTCTACTCGAGGG
GGGTAGGTGTGTTTCGTTCGGTCTTGTTTGAGTATTTCTGTGGGACATCC
TATCATCCTCTTCGAAGCTGGGTGGAGGGGGGAACTAATCTCGTACCTGC
TTCTCTTGTGGAGGTTTGCACACATTTCTCATACTTGCTGAGGTTCGACG
CGAGGGGGTTGTTTCGTGAGAGAAAGGTTGGAAGGGTGCCACGGCCTACT
CGGAAACAGAGGGTATCCTTGGAGCGCTTCATCTCCAGAGATCCAGCAAT
ATAAAACTCGACCCCCGCACTTTTGGGTCATACCCGGAGACAGGGGTTGG
GCAAGACGAAAACTGTTATGTCATCCCCGAGGGCCTTGGGCAAGAGAACA
TACAGCTTGTTTGCGCTTCGTACATGCCGGTCAGGCCAAGCACTTGAACA
CACACACGAGAACCACGAAAAACGAGAAAGAAAAGAAGGCGGGTAGCAAG
GTGGTGAAGGTCTCAGATCCCAGATCGCGATCACCTCGAAGGCTGCAGCT
CTCGGGGTCATCTTCAGTGTAGCAACCGTCGTGCACGGTTGCACATTCGG
TGGACTTCCAATGGCGACATGGCGATGAGATGAAGTATTTCTCAATACAC
CCAAGGGCGCTGATTCTTTTTTTCCGACACCTTCCCGTCAAATCATTTGT
TTGGACCTCTGCGGGTACGAAAGCCCCATCCCCCCCCCCCCCCCAAACGC
CATACAACTTCCTATGTAAACAAGCCTATTCTAAATCCTATATACAAAGG
GGGCACATTTCATGCCCGAGGGTAGTTCGACCTACGTAGCTGGCGCGTGG
GCGAGGTTGCGTGCACCGCAGCCAGCCGCGGTACAGTCCGCAGCAGAGGA
GAGAGAGAGAGAGCTTGCGAAGAAGACGTGGCCACGATGAGCACAGTCTC
CTTTGGGAGGGGATGCCTTTCAACGACCCCTTGGACAAGTGGCCTTTCGA
CTGTCAAAACCTCCGTCACACACCGAATAAAGTCCCACACCAGACGAGTA
CAGCTGGCAAAGCCCCCGTAACACGACGTAAGGTCTCGCTGGAGGCAGGG
GGGGGGTTGACGTAGTACAATTGACAGGTCACACTAAGACGAATCGTCAC
CGGAGAAAGGGGGACTTGGTTGAGGAAAAGAGCTCGAGTCGGAGGAGGAC
TTCCAGGAGAAGGCGGCGGACAGAGAGGGAAACGAGGAGGCGGAGGAGGA
GGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAAAAAACAAA
CGAAACACAATTGAAATTTATTTGGGGGGGGGGTGGGTAGGGAGGGGCGG
GGAACCACNNNNNNNNNNGAGGAGGAAGAGTGAGGAAGAGGGGAGGGGAG
GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGTGGGGTGGCGGAG
TGGACAAGTACAACGCACCGCAAATTGCAATTAATTCTGGACAGGTGTTG
CATGTGGCGAAGGTGATGCCACCGCCGTAAGCTCATCGACAGCCCCGCTC
CGATATGTTGCCGGTTTGAGCAATAATAGCTTGGATTGATGACGTTTCGA
CGCATGGTATTGATGTGTCCTTTGGGACTGGTGTATCGTCCAGTTTGTGT
CATTTCGCCAAGAACGCCCATGGTCAATGCCGCGGATTTGTCACAGAAGC
ATTGAAAAGTTCTGAGTTAGTTTCGATTGAGGGGTTGTCCCCAAGCACTG
TACTTCAACACTTGAAAACCAACCACAAGTGTCCCCAGCCCATCACAGCT
ATGGTGCGAAGTAGCAATCTTCTTCTGGCGCCGGATTTACGGCGCCGGAT
TTACACATCTTTAATTTTTATCTCAAGCTTATGGAACAAACACTTTTGAA
GTACCTGGTAACAAGGTCCTTTGTGCGAGTATATGTGCCGTGATCACCAG
CACACACAAGCAAGCACATGCAATAGAGAGGAAGACAACCAAAAAGGCCT
GTACAAAATTGTACCACGAAAAAAAAAACTTTAAGCGCACCCTTCCGACA
CTTTCTTCAGTTTTGCTAAACCGCCCATGAGTCACCCATAGGCATCACAT
GGGCGGCCATTGAGTGTTTTTCAACCAGAACAAGTGTACTCCTCAACAAA
AGATTATCTGGTCTATAACGGACAGTATAACGGCCAATACCCCTGACGCA
AACCCTAACCCGAACCCCAAGCCCACAAGATACGTGCCAGGTTGGCGCTT
GGTGGCCATGTTCTAGGTTGATGTGCCGATAGCTAGTTTCTAGCTTAATA
TGCCAGTCGCGAGTTCTAGGTTGAAGCTCACGGTAGACGCTTCGTGGGCA
GTCCATGGGCCCATGGGCAACCCATGGGTGACCCACGGGCGGTTTAACAG
AACTGCCAGTACTGTGGGAGATTGTCCCGGGGGGTCAGGGGGTCGGGTAT
GTTTGTGGTACTTGGATATGCGTCCGATCTGTGCGTCCTCTGTGGGGGAT
ACGCGTGTAGGAAGTATGCGTGTGGTCGGTATGTATGCGCTTGGCGTCCG
AGTGTGGGCCCCCGAGAGAGCACACGGCGGTGTGCTCCTGGCACTTGCTT
GAGGGGCTTGCGTGTCGGACACCAGCTTGCCTGACCGTCGGCGATGAGGA
CGCGACGGCGATTGACGATGGTGGTGTCGGCAGTTAGGATAGCACTCGCC
TGAGGGGCGAGCACTCCATGTCGTAGGTAGTGTGATCAGCTTGTCTCAGA
GGCTTGCGTGTTGGTGACCAGCTTGCCTGAGGGGCTTGCGCGTCGGATAG
ATAAACATGGTCGTTTTCTTCATCTGCGTTTCCTGGGATAACACAGTCCC
CAGCTTCAACACCACAGACCGCTGAGGGTGGTAGTGCACACGAACAGGGT
AGGTGTGCGGGGTAACTTGATACACCTCCGAGTTGCATTGTTCGTCGCCT
AGTTTTGAGCGGCTTTTCCAAAGCACGCGCCTCTTGAGCAAATGTCGTCC
CATAGAACCAGTGAAAGATAAAGGAACCAGTCCGAGCCCATAACCAAAAT
TTCTTCATGATTGGGTGCTGTTGCTTCCTGCAGGTGCGTTGACCCTGTGA
GCAGGGACGAGCGCGAGCAATCAGGATGTCCACCAGGGCGCTGAAACTTA
GGTCAAGCTTTGTCGTCCTCGTCACTGCAACGATATTGCTTCAATATGCT
GGCGCCACCTCATCTTCGACCTCTGGCCTTTGCACTGACGAATCGGCGGC
TTGCTCCTTTGGCTCTGAGTGTCAGGAATGCGTGATGACCGCCACCGAGG
CCGGGAGCGAATGTACTTCAAGTTTCACTTCTGATGATTGGAACCCTTGC
GTCGCTTATTCAAGACTCGGCTGCTGCCAAGACTCATATTCCGCCAACGA
CTGCATGGGAAATAGCGATTTTGTTGTTCTTTACACCTGCCTCGCTAATT
ATTATGAATCCATTCTTGGGGGAGGGGGAGAATGTTCCTTGACATGCGAT
TACGGAAGTGAGGACGGAGAGGTGGACGACGATGCGACCGCGACTGGAGA
TGACGGGGTTGGCGATGACGGCGCCACGGAGACTGACGATGGCGTCGTCG
GCGATGAGAACGCGACGGTGACTGACGATGGTGGTGTCGGCAATTACAAC
GCGACGGCGACTGACGACGACGCGACGGCGACTGACGACGACGCGACGGC
GACTGACGACGGGGGTGTCGGCAATTACAACGGGACGGCGACTGACGATG
GCGCCGTGACTAATGACGACGACGCTTCAGATAGCTCTGCCAACACGGGC
GGGACTTCCGGTGCCGGAAACTCATCTCCGAGCGTCATGCTCACGAGTGC
TTTGGGGCTCGCTTTTCTCAGTGCAGCCCCCGTGTTTTACGTGCTCCTGT
GAAGTTTGAGTCGTGGTTCTACGCAGAACGGCCCTGTTAACTCTGTTGGC
CGCATAAGATTTGTAGGCGTGTTTCGTTTGGCATATTATACACCTAAGTT
GTACAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7342:876..6083-

>mRNA_Ecto-sp13_S_contig7342.18509.1 ID=mRNA_Ecto-sp13_S_contig7342.18509.1|Name=mRNA_Ecto-sp13_S_contig7342.18509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7342:876..6083- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACCAGGGCGCTGAAACTTAGGTCAAGCTTTGTCGTCCTCGTCAC
TGCAACGATATTGCTTCAATATGCTGGCGCCACCTCATCTTCGACCTCTG
GCCTTTGCACTGACGAATCGGCGGCTTGCTCCTTTGGCTCTGAGTGTCAG
GAATGCGTGATGACCGCCACCGAGGCCGGGAGCGAATGTACTTCAAGTTT
CACTTCTGATGATTGGAACCCTTGCGTCGCTTATTCAAGACTCGGCTGCT
GCCAAGACTCATATTCCGCCAACGACTGCATGGGAAATAGCGATTTTGTT
GTTCTTTACACCTGCCTCGCTAATTATTATGAATCCATTCTTGGGGGAGG
GGGAGAATGTTCCTTGACATGCGATTACGGAAGTGAGGACGGAGAGGTGG
ACGACGATGCGACCGCGACTGGAGATGACGGGGTTGGCGATGACGGCGCC
ACGGAGACTGACGATGGCGTCGTCGGCGATGAGAACGCGACGGTGACTGA
CGATGGTGGTGTCGGCAATTACAACGCGACGGCGACTGACGACGACGCGA
CGGCGACTGACGACGACGCGACGGCGACTGACGACGGGGGTGTCGGCAAT
TACAACGGGACGGCGACTGACGATGGCGCCGTGACTAATGACGACGACGC
TTCAGATAGCTCTGCCAACACGGGCGGGACTTCCGGTGCCGGAAACTCAT
CTCCGAGCGTCATGCTCACGAGTGCTTTGGGGCTCGCTTTTCTCAGTGCA
GCCCCCGTGTTTTACGTGCTCCTGTGA
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