mRNA_Ecto-sp13_S_contig7340.18507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7340.18507.1
Unique NamemRNA_Ecto-sp13_S_contig7340.18507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7340.18507.1 vs. uniprot
Match: D7FXS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS7_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 1.250e-77
Identity = 165/222 (74.32%), Postives = 170/222 (76.58%), Query Frame = 2 
Query:    2 AEFFRVLGEGERIDADELKMGWVESEHNGKKVAKWICLENGPGPRGVKYKSGVPRQTWQVIAEIGQYNYVMEESDHAGVATRYMATAGFLSPRMKEREQVKRLKMTNKLAVAVEEGAEVPEKTAEAAEAVPTAGAVAPTNEAKTTAPPAAEASKQGXXXXXXXEKPEDNPSGSAGQDEGKATSGTKEEDKAEEKKDSTPDAADAVSSEGKEKSDDAVAGDAA 667
            AEFFRVLGEGE+IDADEL+MGWVESE NGKKVAKWICLE+GPGPRGVKYKSGVPRQTWQVIAEIGQYNYVMEESDHAGVATRYMATAGFLSPRMKEREQ K+LKMTNKLAVAVEEG E P K AEA+E VPTAGA  P NEA              XXXXXXX                           AEEKKDSTPDAADAVSSEGKEKSDDA AGDAA
Sbjct: 1350 AEFFRVLGEGEKIDADELQMGWVESEQNGKKVAKWICLEDGPGPRGVKYKSGVPRQTWQVIAEIGQYNYVMEESDHAGVATRYMATAGFLSPRMKEREQAKQLKMTNKLAVAVEEGTETPGKAAEASETVPTAGAXXPPNEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKKDSTPDAADAVSSEGKEKSDDAAAGDAA 1571
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7340.18507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXS7_ECTSI1.250e-7774.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7340contigEcto-sp13_S_contig7340:3051..5074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score242.3
Seed ortholog evalue2.8e-61
Seed eggNOG ortholog2880.D7FXS7
Model size935
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs28SCF@1,2QZ1Z@2759
Cds size867
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7340.18507.1prot_Ecto-sp13_S_contig7340.18507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7340 3109..5064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.3065195-UTR-Ecto-sp13_S_contig7340:3050..31081681464002.3065195-UTR-Ecto-sp13_S_contig7340:3050..3108Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7340 3051..3108 +
1681464002.3942826-UTR-Ecto-sp13_S_contig7340:5064..50741681464002.3942826-UTR-Ecto-sp13_S_contig7340:5064..5074Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7340 5065..5074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.3499606-CDS-Ecto-sp13_S_contig7340:3108..31411681464002.3499606-CDS-Ecto-sp13_S_contig7340:3108..3141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7340 3109..3141 +
1681464002.3617895-CDS-Ecto-sp13_S_contig7340:3535..36901681464002.3617895-CDS-Ecto-sp13_S_contig7340:3535..3690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7340 3536..3690 +
1681464002.3751056-CDS-Ecto-sp13_S_contig7340:4121..42211681464002.3751056-CDS-Ecto-sp13_S_contig7340:4121..4221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7340 4122..4221 +
1681464002.3856397-CDS-Ecto-sp13_S_contig7340:4485..50641681464002.3856397-CDS-Ecto-sp13_S_contig7340:4485..5064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7340 4486..5064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7340.18507.1

>prot_Ecto-sp13_S_contig7340.18507.1 ID=prot_Ecto-sp13_S_contig7340.18507.1|Name=mRNA_Ecto-sp13_S_contig7340.18507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
MGWVESEHNGKKVAKWICLENGPGPRGVKYKSGVPRQTWQVIAEIGQYNY
VMEESDHAGVATRYMATAGFLSPRMKEREQVKRLKMTNKLAVAVEEGAEV
PEKTAEAAEAVPTAGAVAPTNEAKTTAPPAAEASKQGAPAAASAEKPEDN
PSGSAGQDEGKATSGTKEEDKAEEKKDSTPDAADAVSSEGKEKSDDAVAG
DAATDAEEDKEKPGEDDDKKSEGRSTSERSKSGADGEQDNQASDNEDDKS
KQGAEKDDGGSKRDAATDDDASVSKPADDRESRRSDAE*
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mRNA from alignment at Ecto-sp13_S_contig7340:3051..5074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7340.18507.1 ID=mRNA_Ecto-sp13_S_contig7340.18507.1|Name=mRNA_Ecto-sp13_S_contig7340.18507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2024bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7340:3051..5074+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGAGTTCTTCCGGGTGCTAGGGGAGGGCGAGAGGATAGACGCGGACG
AGCTGAAGATGGGCTGGGTGGAGAGCGAGCACAACGGCAAAGTAATAATA
GTATTTGGTCACATAGCGGCACATGGTATTCCAAGAACAACAAAATAAAC
AGAGTCACCGAAGACCGGACAACCCAGTCGGCGGAAAGGGAGAGGGCATG
CATGTATCTTACGGTAATATGGACCGACACACCTCATGAATACATTCCTA
TCAAAGCTTCCAAGAGCACTGAAAGTGCAATTCGCTAAATTTTCAAGAAC
ATGGCGTGTTTCATGCAATTATCGTTTAGTTATAGAGCCATGTAGACCAG
TCCACACATGAATCACTGTAAGCATACAGCGAGTTACCGCGGCGCCAGAT
TGCGGCACTTCACGGCGGCACTCGTCATTCCCATCCCCCCTCACATGTGA
CCCCCTTACCCCCCGCTTCCGATTGTGAACGGCAGAAAGTCGCCAAGTGG
ATTTGTCTCGAAAATGGTCCGGGTCCCAGGGGCGTCAAGTACAAATCCGG
GGTGCCTCGGCAAACGTGGCAGGTCATCGCCGAGATCGGGCAATACAACT
ACGTCATGGAAGAGAGCGACCACGCTGGCGTAGCCACCAGGTATCATCTT
CTTGCCTTTCGCGAAACTGAGTGTTTTTTTTTATATATTTCGCGAAACCG
CACCACGTCTTCTGTGTGCGCACGTGGGGGTAGGCGTGTCATCCCTGAAC
GAGTTGCGAGGCTTGCCCGTAGGGTAACCGGTACCGTTAAACGTTTTTAC
CACCGCAACAAGGGACAATGACAGGCAAGCAAGGATACTGTTTTTATCCT
ACACGCGAGAGAGACCATCTGGTCTTCGGATGCTTCTCGTCCGCGACTGA
ACTGAAAGTTACACAAACGTGGTCATCTGGAAGTTAACGCTAGACGGTGT
GCTTCACGACAGGACGAGCAGAGTTTGTGCGTTCTCTCTTCCCACCGAGG
AGTGGTGCCATTGAAACTTCCCTGCGATGCGGCGAAAAAATATTTCATGT
TTCTCTTGTTTCTCTTTGCAGATACATGGCGACGGCCGGTTTCTTGAGCC
CTCGCATGAAGGAGAGAGAACAAGTGAAGCGGTTGAAGATGACCAACAAG
CTCGCCGTCGCCGTTGAGGAGGTGCATTTTTTGTATTGTTTTGTTGCCTT
ACTTCCAAGACTAGCGCTCACAGCACTTGTGCCGTTTACTCCAACCCGCG
GTCACACGGAAGGGTTCCTCTCCCTGAGGCCCGTGCATGAAATTATAACA
TATGTTGTTCGAGCACACAGGACGAGACCAACGGTACCGCCCCTAATGCC
AAGGAGACGGTTTGACGTACTATCAGTCTACAAGCCCAACACTAACAATT
GCTTGCACAAACGCTCCCTTCCATACCTCCCGCAGGGTGCTGAAGTCCCA
GAAAAAACCGCCGAGGCGGCTGAAGCGGTACCGACAGCGGGAGCGGTAGC
CCCAACGAACGAAGCCAAAACCACCGCACCACCGGCGGCAGAAGCATCTA
AGCAGGGTGCGCCTGCCGCTGCAAGCGCAGAAAAGCCAGAAGACAACCCC
TCTGGATCGGCCGGCCAAGACGAAGGGAAAGCGACGAGCGGCACAAAAGA
AGAAGATAAGGCCGAAGAAAAGAAAGATTCTACCCCGGACGCGGCAGACG
CTGTTTCCAGCGAAGGCAAGGAGAAATCGGATGACGCTGTCGCCGGAGAT
GCTGCGACTGATGCCGAGGAAGACAAAGAAAAGCCGGGTGAGGATGACGA
CAAGAAAAGCGAGGGACGAAGCACGTCCGAGCGTAGCAAGTCTGGCGCCG
ACGGAGAACAAGACAACCAAGCATCCGACAACGAAGACGACAAGTCCAAG
CAAGGCGCAGAAAAAGACGACGGCGGATCCAAGCGCGATGCCGCTACCGA
TGACGATGCGTCCGTCTCGAAGCCGGCCGACGACCGAGAGAGTCGGCGAT
CCGACGCTGAATAATATTTTTGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7340:3051..5074+

>mRNA_Ecto-sp13_S_contig7340.18507.1 ID=mRNA_Ecto-sp13_S_contig7340.18507.1|Name=mRNA_Ecto-sp13_S_contig7340.18507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7340:3051..5074+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTGGGTGGAGAGCGAGCACAACGGCAAAAAAGTCGCCAAGTGGAT
TTGTCTCGAAAATGGTCCGGGTCCCAGGGGCGTCAAGTACAAATCCGGGG
TGCCTCGGCAAACGTGGCAGGTCATCGCCGAGATCGGGCAATACAACTAC
GTCATGGAAGAGAGCGACCACGCTGGCGTAGCCACCAGATACATGGCGAC
GGCCGGTTTCTTGAGCCCTCGCATGAAGGAGAGAGAACAAGTGAAGCGGT
TGAAGATGACCAACAAGCTCGCCGTCGCCGTTGAGGAGGGTGCTGAAGTC
CCAGAAAAAACCGCCGAGGCGGCTGAAGCGGTACCGACAGCGGGAGCGGT
AGCCCCAACGAACGAAGCCAAAACCACCGCACCACCGGCGGCAGAAGCAT
CTAAGCAGGGTGCGCCTGCCGCTGCAAGCGCAGAAAAGCCAGAAGACAAC
CCCTCTGGATCGGCCGGCCAAGACGAAGGGAAAGCGACGAGCGGCACAAA
AGAAGAAGATAAGGCCGAAGAAAAGAAAGATTCTACCCCGGACGCGGCAG
ACGCTGTTTCCAGCGAAGGCAAGGAGAAATCGGATGACGCTGTCGCCGGA
GATGCTGCGACTGATGCCGAGGAAGACAAAGAAAAGCCGGGTGAGGATGA
CGACAAGAAAAGCGAGGGACGAAGCACGTCCGAGCGTAGCAAGTCTGGCG
CCGACGGAGAACAAGACAACCAAGCATCCGACAACGAAGACGACAAGTCC
AAGCAAGGCGCAGAAAAAGACGACGGCGGATCCAAGCGCGATGCCGCTAC
CGATGACGATGCGTCCGTCTCGAAGCCGGCCGACGACCGAGAGAGTCGGC
GATCCGACGCTGAATAA
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