mRNA_Ecto-sp13_S_contig7337.18501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 535 bits (1379), Expect = 9.000e-184 Identity = 276/301 (91.69%), Postives = 283/301 (94.02%), Query Frame = 3
Query: 6 NGYGAVKTPQVRWMNEEELAFVRGVLMTKQEKVRLKQEKLHQQLASRGYAGTELVSIGSSGAADAASGR------GDVISLEAFVEFSLWWAPLMTTLSLLRNDWASTDPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLASSTRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDEPLGGGPWGGGGEDAALSDTMSLYPQPPDVARLSGPVGVVTLEEWGSRPIDMVLVDDDLDADLTLAGAV 890
NGYGAV TPQVRWMNEEELAFVRGVL TKQEKVRLKQEKL QQLASRGY+GTELVSIGSSGAADAA GR G+VISLEAFVEFSLWWAPLMTTLSLLRNDWAST+PTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPR SSMLAS+ SRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSM+VLYPDVRKEDAFDEP GGGPWGGGG DAALSD+M LYPQP DV RLSGPVGVVTLEEWGSRP+DMVLVDDDLDADLTLAGAV
Sbjct: 41 NGYGAVNTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMEVLYPDVRKEDAFDEPSGGGPWGGGGGDAALSDSMPLYPQPSDVTRLSGPVGVVTLEEWGSRPLDMVLVDDDLDADLTLAGAV 341
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 526 bits (1356), Expect = 5.300e-171 Identity = 277/309 (89.64%), Postives = 280/309 (90.61%), Query Frame = 3
Query: 6 NGYGAVKTPQVRWMNEEELAFVRGVLMTKQEKVRLKQEKLHQQLASRGYAGTELVSIGSSGAADAASGRG-----------DVISLEAFVEFSLWWAPLMTTLSLLRNDWASTDPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLASSTRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDEPLGGGPWGGGGE---DAALSDTMSLYPQPPDVARLSGPVGVVTLEEWGSRPIDMVLVDDDLDADLTLAGAV 890
NGYGAV TPQVRWMNEEELAFVRGVL KQEKVRLKQEKL QQ ASRGYAGTELVSIGSSGAADAASGR DVISL+AFVEFSLWWAPLM TLSLLRNDWAST+PTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSML S+ RSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDEP GGGPW DAALSDTMSLYPQPPDVARLSGPVGVVTLEEWGSRPIDMVLVDDDLDADLTLAGAV
Sbjct: 705 NGYGAVNTPQVRWMNEEELAFVRGVLKAKQEKVRLKQEKLRQQRASRGYAGTELVSIGSSGAADAASGRXXXXXXXXXXXXDVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDEPSGGGPWXXXXXXXXDAALSDTMSLYPQPPDVARLSGPVGVVTLEEWGSRPIDMVLVDDDLDADLTLAGAV 1013
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.550e-39 Identity = 101/254 (39.76%), Postives = 135/254 (53.15%), Query Frame = 3
Query: 3 RNGYGAVKTPQVRWMNEEELAFVRGVLMTKQEKVRLKQEKLHQQLASRGYAGTELVSIGSSGAADAASGRGDVISLEAFVEFSLWWAPLMTTLSLLRNDWASTDPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVT--------------------------QAAPRASSMLASSTRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDE 686
RN + P R ++ +L F+RG+L QE V A G G E +G GR D +S+EAF FS WWAPLM TL ++RNDWA+T P RVHGF+SR+A++R L++RE GTFLLRFSES+ G LV+SFT+ Q +P ++ + R +S+ VKH LVEV+ GG C I+ E+G Y SLHD V ++ LYPD+ KE+AF E
Sbjct: 203 RNWDDPIILPHGRVVDTPQLEFIRGILRRGQEAVAK---------ARWGATGDECTEVGG-------DGRDDFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVISFTQPSVSVSRLSRISRCLVPFISCAGRLACCLQGSPINPRIVLQQFQLRSGRRSLSVKHSLVEVKWGGRCCIQAEKGGMRCYGSLHDFVRQIPELKKLYPDIPKEEAFGE 440
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 164 bits (414), Expect = 3.400e-38 Identity = 105/248 (42.34%), Postives = 136/248 (54.84%), Query Frame = 3
Query: 3 RNGYGAVKTPQVRWMNEEELAFVRGVLMTKQEKVRLKQEKLHQQLASRGYAGTELVSIGSSGAADAASGRGDVISLEAFVEFSLWWAPLMTTLSLLRNDWASTDPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLASSTRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDEPLGGGPWGGGGEDAALSDTM 746
RN + +P R + +L F+RG+L QE V A G G E + R D IS+EAF +FS WWAPL++TL ++RNDWA T P RVHGF+SR+AA+R L++RE GTFLLRFSES+ G LV+SFT+ P S P +S+ VKH LVEV+ GG C I+ E+G Y SLHD V ++ LYPD+ KE+AF E P G AA D +
Sbjct: 700 RNWDDPIISPHGRVADTPQLEFIRGILRRGQEAVAR---------ARWGATGDECPEVDG-------GCRYDFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQ------PSVS----------PGRRSLSVKHSLVEVKWGGRCCIQAEKGGMRCYASLHDFVRRIPELKKLYPDIPKEEAFGETPRSPPATASGPGAARRDEL 915
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 126 bits (317), Expect = 3.170e-26 Identity = 81/215 (37.67%), Postives = 105/215 (48.84%), Query Frame = 3
Query: 39 RWMNEEELAFVRGVLMTKQEKVRLKQEKLHQQLASRGYAGTELVSIGSSGAADAASGRGDVISLEAFVEFSLWWAPLMTTLSLLRNDWASTDPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLASSTRSRPRSQSMCVKHCLVEVRRGGWCYIEV-EQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAF 680
R ++ + F+RG+L KQ+ +LA+ G + GR D IS+E F +FS WW PLM TL ++RNDWA T P VHGFI R+ + L R RG FLLRFSES PG+LV+S H H LVEV GG CY+ V +QG++ Y SLHDLV ++ LY D+ E F
Sbjct: 883 RVLDRSQWGFIRGILRKKQK-----------ELANAGVQTVDCTEY-------RLDGRYDFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENL-RRARGAFLLRFSESHPGKLVISRAYH----------------------------HSLVEVTEGGRCYMTVNQQGTRREYESLHDLVTQNGQLRHLYQDIPMEQVF 1050
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Match: A0A7S2F5D4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5D4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.600e-7 Identity = 46/149 (30.87%), Postives = 72/149 (48.32%), Query Frame = 3
Query: 24 KTPQVR---WMNEE----ELAFVRGVLMTKQEKVRLKQEKLHQQLASR--GYAGTELVSIGSSGAADAASGRGDVISLEAFVEFSLWWAPLMTTLSLLRNDWASTDPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTE 443
K PQVR W EE ELA + K + ++ K H+ L+ + + T+++ + +G +S V WW P+++ ++LL W ++HG + R A++ LL R+ GTFL RFS SQP LV+S E
Sbjct: 1 KQPQVRVDVWTREEVSWEELALGLQEELMKASEQTVRDSKAHRSLSLQDLNFIRTKIIQL--------PAGPRRRVSRSMLVALKKWWTPVLSIVTLLPGPWQQW---QIHGMLDRATADQLLLNRQPGTFLFRFSGSQPQFLVISVLE 138 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7337.18501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7337.18501.1 >prot_Ecto-sp13_S_contig7337.18501.1 ID=prot_Ecto-sp13_S_contig7337.18501.1|Name=mRNA_Ecto-sp13_S_contig7337.18501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp MNEEELAFVRGVLMTKQEKVRLKQEKLHQQLASRGYAGTELVSIGSSGAAback to top mRNA from alignment at Ecto-sp13_S_contig7337:96..3242+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7337.18501.1 ID=mRNA_Ecto-sp13_S_contig7337.18501.1|Name=mRNA_Ecto-sp13_S_contig7337.18501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7337:96..3242+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7337:96..3242+ >mRNA_Ecto-sp13_S_contig7337.18501.1 ID=mRNA_Ecto-sp13_S_contig7337.18501.1|Name=mRNA_Ecto-sp13_S_contig7337.18501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7337:96..3242+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |