Homology
BLAST of mRNA_Ecto-sp13_S_contig10156.185.1 vs. uniprot
Match:
A0A6H5LDU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDU4_9PHAE)
HSP 1 Score: 204 bits (520), Expect = 1.110e-60
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 1
Query: 1 LGSPSGAGFAAPSPTGAPRTLPPAALAAAAVVREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDETGKGAMHPLMASKR 339
LGSPSGAGFAAPSPTGAPRTLPPAALAAAAV+REGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQ XXX PASP+ETGKGAMHPLMASKR
Sbjct: 470 LGSPSGAGFAAPSPTGAPRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXPASPEETGKGAMHPLMASKR 582
BLAST of mRNA_Ecto-sp13_S_contig10156.185.1 vs. uniprot
Match:
D8LR84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR84_ECTSI)
HSP 1 Score: 151 bits (381), Expect = 1.900e-41
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1
Query: 100 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDETGKGAMHPLMASKR 339
EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPD TGKG MHPLMASKR
Sbjct: 351 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDATGKGGMHPLMASKR 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10156.185.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.11e-60 / Id = 96.46 Expect = 1.90e-41 / Id = 97.50 Sequence A0A6H5LDU4_9PHAE D8LR84_ECTSI
Match Name E-value Identity Description
A0A6H5LDU4_9PHAE 1.110e-60 96.46 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LR84_ECTSI 1.900e-41 97.50 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 151.4 Seed ortholog evalue 2.6e-34 Seed eggNOG ortholog 2880.D8LR84 Preferred name DCAF7 Model size 339 KEGG ko ko:K11805 Hectar predicted targeting category other localisation GOs GO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146 Exons 2 EggNOG free text desc. epidermal cell fate specification EggNOG OGs KOG0290@1,KOG0290@2759 Cds size 339 COG Functional cat. M Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04121
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462511.5223556-CDS-Ecto-sp13_S_contig10156:4471..4552 1681462511.5223556-CDS-Ecto-sp13_S_contig10156:4471..4552 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10156 4472..4552 - 1681462511.5343075-CDS-Ecto-sp13_S_contig10156:5580..5838 1681462511.5343075-CDS-Ecto-sp13_S_contig10156:5580..5838 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10156 5581..5838 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10156.185.1
>prot_Ecto-sp13_S_contig10156.185.1 ID=prot_Ecto-sp13_S_contig10156.185.1|Name=mRNA_Ecto-sp13_S_contig10156.185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
LGSPSGAGFAAPSPTGAPRTLPPAALAAAAVVREGSGSGARSPTWPLPRV back to top mRNA from alignment at Ecto-sp13_S_contig10156:4472..5838-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10156.185.1 ID=mRNA_Ecto-sp13_S_contig10156.185.1|Name=mRNA_Ecto-sp13_S_contig10156.185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10156:4472..5838- (Ectocarpus species13 EcNAP12_S_4_19m)CTTGGGAGTCCCTCCGGAGCGGGCTTCGCCGCGCCGTCGCCTACGGGGGC
CCCGCGGACTCTCCCCCCCGCGGCGTTGGCGGCCGCGGCCGTGGTTAGGG
AGGGGAGCGGCAGCGGCGCACGCTCCCCCACTTGGCCGCTTCCGCGAGTC
ATCCCCGAGGGGTCGGAGATCTCTGACCAGGACGCCGGCGGCTTGCTGAT
CGACTTCTTCAAGTCGGTGCACGATAAGGTCAAGACTGCTTCCGACGAGC
TCGGGGAG GTATGTATGTGTGTACGGAAGGGTGTAGGTCGTGTTTTGACC
GCTCACGGTCGCCCGCAGAGCAGCATGTTCAGTCGTCATGTTGTGCTGCT
AGTTTTCCCTTCCGCGCTGTGCTTGGGACATTTCTTGTTTCTGATGCTCT
CTGTTTGACCTTGGGCGGCCGCGCTCAAAATCCCTCTTGCTCAAACCTCT
AGTTGGTTGATTGCGTAGCGGCGCCACCGTCCCTCCGAAACGCTCGTTTT
TTCCAAACCGCAAAGACGAGAAGCACGCACACAGTATTAAGTTCTCAACA
GTGGCGCAAGAGTGCGAGAGTCAACCGCGCACACCCTAAAGACCGATTTT
CACAGCTCACGTACGACCATTGTAGGGTGCCAACGCCGACAGGATAGGGA
TTTTTGCAACGACAATAAATACGTGGTAGAGATTGATCGTTCCTTGCTTG
TGTCGGTGAGCTTTACTTGGGAGTACCGTATACGACACAAGATAACACAC
CCCCTGACCCGATTTTCAAGGCTCGGTTTTTCAAGAGCAGTAAAAGTGGG
GATGCCGAAAACGGCGGCGTTGGAGCTTTTCTGATCGAGAGCTCTCCGAA
CACGTATCGTTTGGTTAACTCATCGTCTTGGTCGTGAAGTAATCGAGCTT
CGAAAATCGGTCCAGGGGGTGTGTTACCTTATGTCGTGTACGGTACTCTC
TTCGGGTTGTGGAGTAATCGATGTTTGAGGAGTCAATCTAGGGGTTACGG
TACGCTACGTGATCGCTCGGTCGGAATATTACAGTATTCAGTACCGCGGC
ATGTCTACACCCCCCTTCTATGGCCATCTATGGCAGAGTCGTGTGGTATG
CGTGACCGTGGGTGTCCTCATTTCAGTGCTGATTTGTAGATAGTCTAATG
GTGTGCCTGTTACTACATGTAGCGTTCTCCCTGTGCTCTCAGCCCCGCAC
ATGAAACACGCCAATCCTACATTGTACAAAACGTTTCCTCTCGCTGCATG
CACCCCGCCCGTGTTCGGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCTGCGAGCCCTGACGAGACGGGCAAGGGAGCGATGCACCCGC
TCATGGCAAGCAAGCGC back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10156:4472..5838-
>mRNA_Ecto-sp13_S_contig10156.185.1 ID=mRNA_Ecto-sp13_S_contig10156.185.1|Name=mRNA_Ecto-sp13_S_contig10156.185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10156:4472..5838- (Ectocarpus species13 EcNAP12_S_4_19m) back to top