mRNA_Ecto-sp13_S_contig122.1849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig122.1849.1 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI) HSP 1 Score: 1850 bits (4793), Expect = 0.000e+0 Identity = 1010/1106 (91.32%), Postives = 1027/1106 (92.86%), Query Frame = 1
Query: 154 MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARKTPAGPASSEDLVAGDRGEEQWTKAAAAGGNSGFQALIGVNSVVVGHVRAAEELRASLLSPPSPRDLQKIRAPGTPTRRGEQPKSEEERLRKRSVSLRTGSPSAQAAASSRPQRVGSAASIAATLAMAAVRRGDRPYYVGAASGASRGSPEQTPQPTEGVSMANLLDIAVSLFGSGLGAGGRGGRHSIDGDGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSPPRKDCALVSELMWRTAQLRKAGLVSSAERHSIAGLVLQRMAWEEGTSRAPAPLLATTPPVDSSVESAASALLDSLVLEAKGLRKAIDVRCLHARTTLDTVEVPSVWGPTSSEVASSDAKAASPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGELSALRQELLAIWPPIADLPFPAKRSSASRAXXXXXXXXXX-VVEDRVVRLEAFLDGALALLGMYVSIDPRCSGALRIVQDFLGRPEDLFSADLALSPALRDQKRAELLLYRLLNQADSPASRMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLESEEWGPVKEVMGQATRSVLPTDQIDGLHRAAEHLTVLHASLQLNVCCDNGDASTDAADSSCNGRSGSSAALSVDSRRTSLKPYSREDRKGEAGEEDREEGSVRVESATAPTHGTLCPEEGEFGIRERDSNGLRLGGRPHRQMPAVSDSFTGDDGSVTNDVASDSDGPSSAPALSLVDEEQRLNVVQELVEDELSWQAHCVQDGDITTEEVGGEALRPKFNSSRSWSALSTSHDISPTPAKSSTSSWESIGSLDEGAAPGESDGGGXXXXXXVQDHPEVAPPATRPSDQAMGADDFLPLFALVLVHSAPLDLLLPQTILTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLGADGNQDSSP 3468
MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARK PAGPASS+DL AGDRGEEQWTKAAAAGGNSGFQAL+GVNSVVVGHVRAAEELRASL SPPSPRDLQKIRAPGTPTRRGEQPKS EERLRKRSVSLRT SPSAQAAASSR QR GSAASIAATLAMAAVRRGDRPYYVGAA GASRGSPEQTPQPTEGVSMANLLDIAVSLFGSG GAGGRGGRHSIDGDGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQS PRKDCALVSELMWRTAQLRKAG SAERHSIAGLVLQRMAWEEGTSRA APLLATTPPVDSS+ESAASALLDSLVLEAKGLRKAIDVRCLH RT ++TVEVPSVWGPTSSEVASSDAKAA PEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYG+LSALRQELLA+WPPIADLPFPAKRSS SRA VVE+RVVRLEAFLDGAL+LLGMYVSIDPRCSGAL IVQDFLGRPEDLF+ADLALSPALRDQKRAELLLYRLLNQADSPA+RMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVL S+EWGPVKEVMGQATR+VLPTDQIDGL RAAEHLT LHASLQLN CCDNGDASTDA DSSCNGRSGSS ALSVDSRR SLK YSRED KGEAGEED EEGSVR E ATAPTHGTLCPEEGEFGIRERDSNGLRLGGRP RQ AVSDSFTGD G TNDVASDSDGPSSAPALSL DEEQRLNVVQELVED+L WQA CVQD DI TEEV EALRP FNSSRSWSALSTSHDISPT AKSSTSSW+SIG L+EGAAPG XXXXXX SDQAMGADDFLPLFALVLVHSAPLDLLLPQT+LTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSL ADGNQDSSP
Sbjct: 1 MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARKAPAGPASSQDLAAGDRGEEQWTKAAAAGGNSGFQALVGVNSVVVGHVRAAEELRASLRSPPSPRDLQKIRAPGTPTRRGEQPKSAEERLRKRSVSLRTDSPSAQAAASSRRQRAGSAASIAATLAMAAVRRGDRPYYVGAAGGASRGSPEQTPQPTEGVSMANLLDIAVSLFGSGDGAGGRGGRHSIDGDGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAG---SAERHSIAGLVLQRMAWEEGTSRALAPLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHTRTIVETVEVPSVWGPTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGDLSALRQELLAMWPPIADLPFPAKRSSVSRAAAAETAETEETVVEERVVRLEAFLDGALSLLGMYVSIDPRCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDATDSSCNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFGIRERDSNGLRLGGRPDRQTRAVSDSFTGDGGRATNDVASDSDGPSSAPALSLADEEQRLNVVQELVEDDLCWQAQCVQDEDIATEEVDREALRPNFNSSRSWSALSTSHDISPTAAKSSTSSWDSIGGLNEGAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLSADGNQDSSP 1103
BLAST of mRNA_Ecto-sp13_S_contig122.1849.1 vs. uniprot
Match: A0A7S3H9E4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E4_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.280e-32 Identity = 156/576 (27.08%), Postives = 257/576 (44.62%), Query Frame = 1
Query: 847 SGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRC---VRSKSWR------QSPPRKDCALVSELMWRTAQLRKAGLVSSAERHSIAGLVLQRMAWEEGTSRAPAPLLATTPPVDSSVESAASALLDSL-----VLEAKGLRKAIDVRCLHARTTLDTVEVPSVWGPTSSEVASSDAKAASPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGELSALRQELLAIWPPIADLPFPAKRSSASRAXXXXXXXXXXVVEDRVVRLEAFLDGALALLGMYVSIDPRCSGALRIVQDFLGRPEDLFSADLALSPALRDQKRAELLLYRLLNQADSPASR--MKHLLMRDFES--DTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETRE-----AIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLESEEWGPVKEVMGQATRSVLPTDQIDGLHRAAEHLTVLHASLQ 2505
+G+ + KK+ ++V V G + TLG+ VK+L + V +++ G E AGI +GDVI G+N+ P +G + L +K + R + + WR + P E++ + L ++ + S ER + ++L M ++ RA T+ ++ S +A + + L +++AKGLR A+ VR +H ++ DTV +V+RVEDV +G QW+V Y + AL +ELL + ++ FP KR S +VE+R+V LE ++ L +L +Y ++D S ALR +Q FLG L D PAL DQ+ EL+ Y+ LN S A + ++ + D + + A ++ A L ++ FV H Q+ T E + VRK +RRQVE +LYLPLRR +++ + + + ++ L+RAI L+ +PP F LE V + + + ++ LP DQ L +AA + LH Q
Sbjct: 113 AGLHNAAKKQATGSIYSVVVDLGKTGTLGIGVKDLADNVLAVSMLKR-ENCCPGAGEDAGIRLGDVIYGVNFIPTREG----------SKTLISIIKKETGRGKTHIHIQGWRCHQLCSDAIPGYHFPRADEILVQAYSLVQSKVFSDWERWNFIEILLGHM-LDDLKLRASGDDGDTSGLLEPSQGAARAKQMQVLDLERNIMQAKGLRTALCVRIVHTKSHGDTVV-----------------------------------YVLRVEDVQSGLQWVVQRRYSDFFALNEELLDMTHFTKEVEFPRKRLSIRNTAK--------LVENRIVALEQYMRRMLHILTLYATMDSSASRALRHLQTFLGVDNYL---DCVHPPALDDQRFIELMAYQFLNDFGSEACQQCVRFITSVDLDGMVEIGTADGYVPVLNHARDALAEVEQFVQQLHMAQMIQTLQTRREDLNEDQLRSFVRKCIRRQVEAALYLPLRRTVFRIVFTFLAEKSKLLQRAITMLQGAPPKFFMLEPF-VTRATSLPRTVKAFRRVIQAYLPADQGQLLIQAATAVMELHKECQ 629
BLAST of mRNA_Ecto-sp13_S_contig122.1849.1 vs. uniprot
Match: A0A7S1U3A3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3A3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 5.740e-6 Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 3223 ATRPSDQ---AMGADDFLPLFALVLVHSAPLDLLLPQTILTHLMDLDGSLSEAGYLVATLEAAVSFITQV 3423
AT P D AM AD+FLPLFA VLVH+ P LLL Q ++ L+D D ++ E GY ATL+A V + Q+
Sbjct: 148 ATSPGDGGLGAMSADEFLPLFAYVLVHARPRRLLLAQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQL 217 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig122.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig122.1849.1 >prot_Ecto-sp13_S_contig122.1849.1 ID=prot_Ecto-sp13_S_contig122.1849.1|Name=mRNA_Ecto-sp13_S_contig122.1849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1106bp MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARKTPAGPASSEDLVAGback to top mRNA from alignment at Ecto-sp13_S_contig122:6949..17494+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig122.1849.1 ID=mRNA_Ecto-sp13_S_contig122.1849.1|Name=mRNA_Ecto-sp13_S_contig122.1849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig122:6949..17494+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig122:6949..17494+ >mRNA_Ecto-sp13_S_contig122.1849.1 ID=mRNA_Ecto-sp13_S_contig122.1849.1|Name=mRNA_Ecto-sp13_S_contig122.1849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig122:6949..17494+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |