mRNA_Ecto-sp13_S_contig122.1848.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig122.1848.1
Unique NamemRNA_Ecto-sp13_S_contig122.1848.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig122.1848.1 vs. uniprot
Match: A0A6H5JA16_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA16_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.950e-6
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  146 QKQHANEETSNNRSSPQLAPEPRAPTFK 229
            QKQHANEETSNNRSSPQLAPEP APTFK
Sbjct:    3 QKQHANEETSNNRSSPQLAPEPWAPTFK 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig122.1848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA16_9PHAE8.950e-696.43BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig122contigEcto-sp13_S_contig122:3763..6784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size229
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.6886113-CDS-Ecto-sp13_S_contig122:3762..38431681462647.6886113-CDS-Ecto-sp13_S_contig122:3762..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig122 3763..3843 -
1681462647.698793-CDS-Ecto-sp13_S_contig122:6636..66961681462647.698793-CDS-Ecto-sp13_S_contig122:6636..6696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig122 6637..6696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.7088108-UTR-Ecto-sp13_S_contig122:6696..67841681462647.7088108-UTR-Ecto-sp13_S_contig122:6696..6784Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig122 6697..6784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig122.1848.1prot_Ecto-sp13_S_contig122.1848.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig122 3763..6696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig122.1848.1

>prot_Ecto-sp13_S_contig122.1848.1 ID=prot_Ecto-sp13_S_contig122.1848.1|Name=mRNA_Ecto-sp13_S_contig122.1848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MVWNIFQPLGEKRNRTSGGQKQHANEETSNNRSSPQLAPEPRAPTFK
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mRNA from alignment at Ecto-sp13_S_contig122:3763..6784-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig122.1848.1 ID=mRNA_Ecto-sp13_S_contig122.1848.1|Name=mRNA_Ecto-sp13_S_contig122.1848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3022bp|location=Sequence derived from alignment at Ecto-sp13_S_contig122:3763..6784- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTGCGTGAAAGAGAGCTAACGTGTTGAAGGAGAGGTAATGGGAGATC
AACACGCCTGTGTGTGCTAAGAGCACCGCCACGCGAGCATGGTGTGGAAC
ATATTTCAACCTCTGGGCGAAAAGAGGAACAGGACATCCGGGGGGCAGGT
ACGCTGCGGCCATCTCTTAACCTACACCATTACCTCTCAGTGCCCCCAAT
GTTGACATCTGATAGCTGGCACTTTGCAGTCCTGCTACGACTTGGCGTTC
TACCTCCCTCCTTGTCCCAATCTATCATATTATTGCGATGCTTCATTACC
GGTACCATTATTATACTATCCTACAAAACAGTCGTAGCTCCTTGCCGTTG
GGTACAACTGCAAACAAGGTGCGTTCAAATAGCAGTATCTGTGTACCGGA
GACACTGCGAACGCCGCATGGCAGGACCGTGTGCGATCTTGGACACTATT
TGGTTTTGATCGGGCGAAGTATGCGGCCAAAGAATAAAATGCTGAGCCAG
AGTTTGAACCCGAGTGCTATAATTTCTAGAAATTTATAATTTCTAGTTAT
TTTCATGTACACGACTCCCAACCGTAGTTCTGCCTCTTGTTGCCAACCAG
TGCACCCTTGGTGATAAATTGGTTTATGCGTACAGCGTGGATGACCTGTA
CACTCGTCTCTACTAGGTATGGGGGCGCAATGACCCGCGTGGTGCGACTC
AATATCTTGCAGTAGTCTTATCTGCGATGCTGATGATGGTGTACGAATCC
CGACACACACCAGCGTGAATCGTTTGTGGTGCAGCTACGCGTGCACCACA
CAGGGACAGCAGGCGTGCGACGGGAGCGACCATGATTTGATGTGCGTAGC
ACGTACATTTACGAGATATCGCGAAAGCGAATGCAACATGCAGCGGTGGC
ACCCGCATGCTCAATAGCCCTTGCTCCGAGAAAACGGAACGAAAATGGCA
TGGCCACCACTTTGCTCAATAGCAGTTGGTTGTCGTCGCGCAAAAGCAAC
AGCGACATGATGGGTATTGTCACCAGAGAACCTCAAGTCTAAAATCGATA
TCGAATTCGACTTATTTTCAATTTCGAGCTGACTCTTCTCGGACGCCCAT
CGTGATGTCGACATAGAAAATAGAAAACAACATGGATGACACGAAAAACG
CCTGAAAGCATCCGTTGCAAAGATTATTTCTTCTTGTGTATTTTTCCTTT
TGATTCACAGGATGACGATGACCCCCACGGGGCATCCCAGGCAGCGAGTA
ACGTGTGATTTAACACTCCGGTCTGATGAAGCACAGTCGAAAACGATGCC
GTTAGCAAAGATAACAACATCACGTCGATGACTCTCTTTCTCACTTTACA
GCAGATCTCGCTCAACGAAAGTATGGTGTGCCCTGCTGGATGCCTTTGTT
TTTGCACCTCAACGCTAGATGAACGGCGAAAGGCACCTCCAACTTTCAGA
GTCTGGCGAGCAACTGGCAAGCAACTTTCCCGTTCGCACTTTCGACTTTC
GATTTTCGATTTTGATCTATTGAGTGCATCATTTTGATTTTTCCACATTA
ATAAGCTTTCGGAACACAATCCTCTTACATCGAAAAACTGACGGCGGTAC
AAGGGTCAGTTGTCCAATCAGTGGCTCTGTCGATTTTCGGTTTTCGATTG
TCGATTCAGCACTGCGGTGACAAGACCCACCCTGTGAATGCAGAAGCTAC
AGCTACATGTAGATGTACTTTTATATGGACACCGAGTGGTTGAAAGCGCG
TGGTTGGAAGCGTCTGCCGCCGACAGCAAAGCAACATAGACCATGTAGCC
ACGGTTGTGATTTCGCCTATAATTTAAAGCTCATGGTTTCAGACTACTTT
GATAAATTTGTCCTGTTGGGGGTATCCCTTTATTTTTTTTGAGAACAAAC
GCAACAACACATGGCCGAGACATATTCGATCACCAAGTGTGGATGCAGAA
TGTAGGTCGCCGAGAGAGCGATCTAGATCAGCCTGTGAGATACCCACGCG
CATGCGAGTTTGGGGTTTACAGGGTAAGCTGTCTGCCTATTACCCATAAA
TACTGCAACGTCCAAGGCACAAGCGGCACGAGGCACAACTGGCCATCCGT
ATGCTCGTTTGTGACGTTGCGGCATATGGTAAATGTTGAACAGGATATAT
CTGGCCGAACAACTCGCGCTGACGGATTTTGATTGATGTTCATGCACTGC
GATGTGTAGCTCGTTCCCGTTGGAAACTACTTCTATCTTTGCTTTTCGAC
TCTCAAGAACTTTGGACAAATCACTCATGCACTAGGTGAAACCTCAGCCT
TTCACATCCATACGGAACTTTGAACGTGTTCCTGTGGAGGATGGTCTTAC
TGGCACAAGACAATGAAGTGTTCACGGAGTTTGTCGTTGACCTATCATAG
CAGAGCCTAGGAGGGTATCTCGTACGAATCGCGGTAGGTTCTCCGCTCCA
GCCGCCAGCCAGAGTCGTTACGTCATGAATTCCACTTTCAGCTGGCGAAG
AACCCTGAACCTTAACAATCATTTCTTCTGGACACCCCCTTGAGCCCCAT
CTCGGGTCGGCAGAATTTTGTTTTAATGGGAGGTTCCTTACGAAAATTAG
TGGTGCTAATATCCCGGCGACAGCTTTTATTCAGGCTTCCGCAACCCCCC
GAGTGCAGTCTGCCAGAACAAGCAATGTCCAAAGAACAAGTTTGGAATGG
TTCCTCCGTACGACAAGGGAGCACCCTGTCCGCAACTTTTTACTGAAACC
TACGCTCTGTCGTAAGCCAAGAGGGAACACACCGACCAACACAGGGCAGG
TATCTAAGCCCCCGGCAGGCAAGCAACTTTCTTTGGGCCGTTAGGTTCTA
CCAACTCGATTTGTTGGCACTCAAAACCGCTTTCCTTCTCGTGTTCCTCG
TGACCTTCCCTTGTTGTCGAAACCATGAAACCATGCAGCAGAAACAGCAC
GCCAACGAAGAGACCTCCAACAACCGCAGCTCCCCTCAGCTGGCGCCGGA
GCCCCGGGCTCCAACCTTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig122:3763..6784-

>mRNA_Ecto-sp13_S_contig122.1848.1 ID=mRNA_Ecto-sp13_S_contig122.1848.1|Name=mRNA_Ecto-sp13_S_contig122.1848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig122:3763..6784- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTGGAACATATTTCAACCTCTGGGCGAAAAGAGGAACAGGACATC
CGGGGGGCAGAAACAGCACGCCAACGAAGAGACCTCCAACAACCGCAGCT
CCCCTCAGCTGGCGCCGGAGCCCCGGGCTCCAACCTTCAAG
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