mRNA_Ecto-sp13_S_contig73126.18476.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73126.18476.1
Unique NamemRNA_Ecto-sp13_S_contig73126.18476.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73126.18476.1 vs. uniprot
Match: D7FLM2_ECTSI (Tetratricopeptide repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.030e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    4 NVNEAYRAEDLARWKPRQLKELLTDLGLDASGCVEKRDIVDKIM 135
            NVNEAYRAEDLARWKP QLKELLT+LGLDASGCVEKRDIVDKIM
Sbjct:  795 NVNEAYRAEDLARWKPGQLKELLTNLGLDASGCVEKRDIVDKIM 838
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BLAST of mRNA_Ecto-sp13_S_contig73126.18476.1 vs. uniprot
Match: A0A6H5JBP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.300e-17
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 NVNEAYRAEDLARWKPRQLKELLTDLGLDASGCVEKRDIVDKIM 135
            NVNEAYRAE LARWKP QLKELLTDL LDASG VEKRDIVDKIM
Sbjct:  316 NVNEAYRAESLARWKPAQLKELLTDLRLDASGSVEKRDIVDKIM 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73126.18476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLM2_ECTSI3.030e-1995.45Tetratricopeptide repeat domain protein n=1 Tax=Ec... [more]
A0A6H5JBP1_9PHAE8.300e-1790.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73126contigEcto-sp13_S_contig73126:500..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463999.2100694-CDS-Ecto-sp13_S_contig73126:499..6341681463999.2100694-CDS-Ecto-sp13_S_contig73126:499..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73126 500..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73126.18476.1prot_Ecto-sp13_S_contig73126.18476.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73126 500..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73126.18476.1

>prot_Ecto-sp13_S_contig73126.18476.1 ID=prot_Ecto-sp13_S_contig73126.18476.1|Name=mRNA_Ecto-sp13_S_contig73126.18476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
GNVNEAYRAEDLARWKPRQLKELLTDLGLDASGCVEKRDIVDKIM
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mRNA from alignment at Ecto-sp13_S_contig73126:500..634-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73126.18476.1 ID=mRNA_Ecto-sp13_S_contig73126.18476.1|Name=mRNA_Ecto-sp13_S_contig73126.18476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73126:500..634- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACGTGAACGAGGCGTACCGAGCGGAAGACTTGGCCCGTTGGAAGCC
CAGGCAGCTGAAGGAGCTCCTGACGGATTTAGGCTTGGACGCGTCCGGCT
GCGTGGAAAAGCGCGACATCGTCGACAAGATAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73126:500..634-

>mRNA_Ecto-sp13_S_contig73126.18476.1 ID=mRNA_Ecto-sp13_S_contig73126.18476.1|Name=mRNA_Ecto-sp13_S_contig73126.18476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73126:500..634- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACGTGAACGAGGCGTACCGAGCGGAAGACTTGGCCCGTTGGAAGCC
CAGGCAGCTGAAGGAGCTCCTGACGGATTTAGGCTTGGACGCGTCCGGCT
GCGTGGAAAAGCGCGACATCGTCGACAAGATAATG
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