prot_Ecto-sp13_S_contig7312.18475.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7312.18475.1
Unique Nameprot_Ecto-sp13_S_contig7312.18475.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length115
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7312.18475.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.260e-38
Identity = 86/102 (84.31%), Postives = 88/102 (86.27%), Query Frame = 0 
Query:   16 SASALTSPEYAPGDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT--GDXXXXXXXVPAGGGMVHGPHLPGGGALAIGQXXXXXGMGWLGGGTELSRIV 115
            SASAL SPE+A  DVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT  GD XXXXXXVP  GGMVHGPHLPGGGALA GQ     GMGWLGGGTELS+IV
Sbjct:  424 SASALISPEFASDDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLTWDGDDXXXXXXVPGSGGMVHGPHLPGGGALAGGQDGDGGGMGWLGGGTELSKIV 525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7312.18475.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.260e-3884.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 26..63
e-value: 6.9E-7
score: 38.9
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 30..61
e-value: 1.0E-11
score: 44.5
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 21..64
score: 13.728
NoneNo IPR availableGENE3D1.10.8.10coord: 7..69
e-value: 1.9E-15
score: 58.2
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 20..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7312contigEcto-sp13_S_contig7312:4918..5262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7312.18475.1mRNA_Ecto-sp13_S_contig7312.18475.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7312 4918..5264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7312.18475.1 ID=prot_Ecto-sp13_S_contig7312.18475.1|Name=mRNA_Ecto-sp13_S_contig7312.18475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
LSEQIAAAVAAAPTTSASALTSPEYAPGDVDMLAEMGFDRARVVLALKAC
SGSVERAAEWLLTGDDDDGGGGVPAGGGMVHGPHLPGGGALAIGQDGDGG
GMGWLGGGTELSRIV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR009060UBA-like_sf