prot_Ecto-sp13_S_contig7301.18464.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7301.18464.1
Unique Nameprot_Ecto-sp13_S_contig7301.18464.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length261
Homology
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: D7G2V1_ECTSI (SWIB/MDM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V1_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.190e-67
Identity = 146/184 (79.35%), Postives = 149/184 (80.98%), Query Frame = 0
Query:   80 VTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSDLVESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSEPTTKAGATPKGRPKAGXXXXXXXXXXXXXXXXXXXE--VASKKTRKPSTVMWRVSDELAAVVGSKDATVDTIRSGVHQYIKEHNLQ 261
            VTKAVWAYIRAESLQDPKD RKIRND+KMF VFKCKTMNMMHIAKKLSPHLKKLSDLVESG             XXXXXXXXX            KS+PT K GATPKGRPKAG  XXXXXXXXXXXXXXX  E  VA+KKTRKPSTVMWRVSDELAAVVGSKDATVDTIRSGVHQYIKEHNLQ
Sbjct:   56 VTKAVWAYIRAESLQDPKDRRKIRNDDKMFPVFKCKTMNMMHIAKKLSPHLKKLSDLVESGGGAPGEEVDTEASXXXXXXXXXTAGSKKRGASGSKSKPTAKGGATPKGRPKAGAGXXXXXXXXXXXXXXXKGESEVAAKKTRKPSTVMWRVSDELAAVVGSKDATVDTIRSGVHQYIKEHNLQ 239          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: A0A6H5L1F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F8_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.740e-60
Identity = 196/268 (73.13%), Postives = 202/268 (75.37%), Query Frame = 0
Query:    1 VDLSEKKSFLKETVTAIMSEGDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSASFQLSPALYEFMGSKETCMARGD----VTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSDLVESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSEPTTKAGATPKGRPKAGXXXXXXXXXXXXXXXXXXX---EVASKKTRKPSTVMWRVSDELAAVVGSKDATVDTIRSGVHQYIKEHNLQ 261
            VDLSEKK+FLKETVTAIMSEG DEXXXXXXXXXXXXXXXXXXXXXX      R SAS    PA    +    +  AR      VTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKK+SDLVESG                XXXXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXXXX   EVA+KKTRKPSTV+WRVSDELAAVVGSKDATVDTIRSGVHQYIKEHNLQ
Sbjct:   41 VDLSEKKAFLKETVTAIMSEG-DEXXXXXXXXXXXXXXXXXXXXXXSQRARLRPSAS---PPASSSPLPCTSSWAARTRAWPAVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKVSDLVESGAPNEEVDTEASSSGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESEVAAKKTRKPSTVLWRVSDELAAVVGSKDATVDTIRSGVHQYIKEHNLQ 304          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: A0A059LJA8_9CHLO (SWIB/MDM2 domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LJA8_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 5.780e-13
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   60 LSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSDLVE 138
            LSPAL  FMG +   M+RG+VTK +W YI+AE LQD KD R+I  DEK+  +F  K++NM  IA  L+ H   + DLV+
Sbjct:  113 LSPALAAFMGQEY--MSRGEVTKKLWEYIKAEKLQDEKDKRRILIDEKLGTIFPGKSINMFRIATLLTKHCHNVDDLVD 189          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: UPI00053C9E86 (golgin subfamily A member 6-like protein 22 isoform X1 n=5 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9E86)

HSP 1 Score: 74.7 bits (182), Expect = 1.620e-11
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 0
Query:   55 SASFQLSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSD 135
            S  +QLSP L  F+GS +  +AR +V K +WAYIR ++LQDPK+ R I  DE +  +FK K +NM  ++K LS H+  LSD
Sbjct:  120 SKLWQLSPQLENFIGSSQ--LARTEVVKKIWAYIREKNLQDPKNKRNIICDESLHSLFKVKAINMFQMSKALSKHIWPLSD 198          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: V4NNF9_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NNF9_EUTSA)

HSP 1 Score: 73.9 bits (180), Expect = 1.710e-11
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   59 QLSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSD 135
            QLSP L +F+G+ +  +AR +VTK +WAYI+ + LQDPKD RKI  DE +  +F+ K++NM  ++K L+ H+  L D
Sbjct:  125 QLSPQLEKFLGTSQ--LARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLFRVKSINMFQMSKALTKHIWPLGD 199          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: UPI000CED48BA (DNA ligase 1 isoform X1 n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED48BA)

HSP 1 Score: 73.9 bits (180), Expect = 2.210e-11
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   59 QLSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSD 135
            QLSP L +F+G+ +  +AR +VTK +WAYI+ + LQDPKD RKI  DE +  +F+ K++NM  ++K L+ H+  L D
Sbjct:  125 QLSPQLEKFLGTSQ--LARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLFRVKSINMFQMSKALTKHIWPLGD 199          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: A0A1J3I4W2_NOCCA (Protein TRI1 (Fragment) n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A1J3I4W2_NOCCA)

HSP 1 Score: 73.2 bits (178), Expect = 4.090e-11
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   59 QLSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSD 135
            QLSP L +F+G+ +  +AR +V K +W YI+  +LQDPKDGRKI  DE +  +F+ K++NM  + K LS H+  L D
Sbjct:  135 QLSPQLDKFLGTSQ--LARTEVVKMIWKYIKENNLQDPKDGRKILCDEPLHSLFRVKSINMFQMNKALSKHIWPLGD 209          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: A0A1D1Y696_9ARAE (Upstream activation factor subunit spp27 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y696_9ARAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.660e-11
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   56 ASFQLSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKK 132
            A   LS AL  F G+ E+ +ARGDV K +W YI+  +LQDP D R+I  DEK+  +F+  + N   ++K L+PH  K
Sbjct:  169 APLHLSDALVNFFGTGESALARGDVVKRMWEYIKQNNLQDPADKRQIICDEKLKELFEVDSFNGFTVSKLLAPHFSK 245          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: A0A251MWI8_PRUPE (Uncharacterized protein n=2 Tax=Prunus persica TaxID=3760 RepID=A0A251MWI8_PRUPE)

HSP 1 Score: 70.9 bits (172), Expect = 9.970e-11
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   60 LSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLS 134
            LSP L EF+G  E  MAR +V K +WAYIR + LQDPK+ R IR DE +  +F+  ++NM  + K LS H+  LS
Sbjct:   34 LSPQLQEFVGEPE--MARTEVVKRIWAYIREKDLQDPKNRRNIRCDESLHSLFRVNSINMFQMNKVLSKHIWPLS 106          
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Match: A0A7N2MYS9_QUELO (Uncharacterized protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MYS9_QUELO)

HSP 1 Score: 72.0 bits (175), Expect = 1.070e-10
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   60 LSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSD 135
            LSP L EF+G  E  +AR  V K VWAYIR  +LQDPK+ R IR DE +  +F+ KT+NM  + K LS H+  L +
Sbjct:  133 LSPKLQEFVGEPE--LARTQVVKKVWAYIRENNLQDPKNRRNIRCDESLHTLFRVKTINMFQMNKALSKHIWPLEN 206          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7301.18464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2V1_ECTSI1.190e-6779.35SWIB/MDM2 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1F8_9PHAE1.740e-6073.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A059LJA8_9CHLO5.780e-1350.63SWIB/MDM2 domain-containing protein n=1 Tax=Helico... [more]
UPI00053C9E861.620e-1148.15golgin subfamily A member 6-like protein 22 isofor... [more]
V4NNF9_EUTSA1.710e-1146.75Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
UPI000CED48BA2.210e-1146.75DNA ligase 1 isoform X1 n=2 Tax=Eutrema salsugineu... [more]
A0A1J3I4W2_NOCCA4.090e-1146.75Protein TRI1 (Fragment) n=4 Tax=Coluteocarpeae Tax... [more]
A0A1D1Y696_9ARAE9.660e-1144.16Upstream activation factor subunit spp27 (Fragment... [more]
A0A251MWI8_PRUPE9.970e-1149.33Uncharacterized protein n=2 Tax=Prunus persica Tax... [more]
A0A7N2MYS9_QUELO1.070e-1050.00Uncharacterized protein n=5 Tax=Fagaceae TaxID=350... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..44
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 166..261
coord: 1..139
IPR019835SWIB domainSMARTSM00151swib_2coord: 54..135
e-value: 8.0E-26
score: 101.8
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10coord: 48..139
e-value: 1.1E-23
score: 84.8
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 223..261
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 56..136
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 228..261
e-value: 7.8E-5
score: 22.5
coord: 58..130
e-value: 4.9E-21
score: 74.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7301contigEcto-sp13_S_contig7301:2869..5864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7301.18464.1mRNA_Ecto-sp13_S_contig7301.18464.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7301 2869..5864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7301.18464.1 ID=prot_Ecto-sp13_S_contig7301.18464.1|Name=mRNA_Ecto-sp13_S_contig7301.18464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
VDLSEKKSFLKETVTAIMSEGDDEEEEEEQEEEEVEEEEEEEEEPASKAK
AKRKSASFQLSPALYEFMGSKETCMARGDVTKAVWAYIRAESLQDPKDGR
KIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKLSDLVESGGGAPDEEVDN
EASSSDDEEPRRTAGSKKRGASGAKSEPTTKAGATPKGRPKAGAGGGSAK
GKKGGGGGKEESEVASKKTRKPSTVMWRVSDELAAVVGSKDATVDTIRSG
VHQYIKEHNLQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR036885SWIB_MDM2_dom_sf
IPR003121SWIB_MDM2_domain