prot_Ecto-sp13_S_contig730.18463.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig730.18463.1
Unique Nameprot_Ecto-sp13_S_contig730.18463.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length621
Homology
BLAST of mRNA_Ecto-sp13_S_contig730.18463.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 621 bits (1602), Expect = 4.540e-205
Identity = 452/530 (85.28%), Postives = 457/530 (86.23%), Query Frame = 0
Query:    1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKSVVFDAAEAAVSTAAAAALGPLSSPELTAXXXXXXXXXXXXXXXXXXXXSLRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRGESPLSSWHGRXXXXXXXXXXXXTGDVVDDFGSPGXXXXXXXXXXXXXXXXXLTAPSFSASTGAAAGVGAGGGVVDSVFVGGGHVLCRARSSSATGPVSDIFHLEAADTPAATGAAAAALEAPAAAPTLLRNNRRARFPSRERAVLLDFVPAAMPLARDPSAHAHASGTESSAPSTPMGGDGGRFRRASSSRSRRLDSFRPVRAASGFQHLLRHGDSGGLGGGG-TRRXXXXXXXXXXXXXXXXSPGEGLLGVPAQVGGESMPFSHLVGTGGSAPAEWDALGTGSG 529
            MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDS IEDILGVSTAMTNPGCVLKSVVFDAAEAA S A AAA GPLSSPELTA  XXXXXXXX          SLRGL      XXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GASRGESPLSSWHGRXXXXXXXXXXXX GDVV DFGSPGXXXXXXXXXXXXXXXXXLTAPSFS S GAA G GAGGGVVDSVFVGGGHVLCR RSSSA GPVSDIFHLEAADTPAATGAAAAA EAPAAAPTLLRN+RRARFPSRER+VLLDFVPAAMPLARDPS HAHASGTESSAPSTP+GGDGGRFRRASSSRSRRLDSFRPVRAASGFQHLLRHGDSGG+GGGG TRR                  G G      +VGGESM F HLVGTGGSAPAEWDAL TGSG
Sbjct:  435 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSTIEDILGVSTAMTNPGCVLKSVVFDAAEAAASAAEAAAPGPLSSPELTAGSXXXXXXXXTRKLTVAPSASLRGLFSFFESXXXXXXXXXXGDETSFGECTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GASRGESPLSSWHGRXXXXXXXXXXXXXGDVVVDFGSPGXXXXXXXXXXXXXXXXXLTAPSFSGSAGAATGAGAGGGVVDSVFVGGGHVLCRTRSSSAPGPVSDIFHLEAADTPAATGAAAAAPEAPAAAPTLLRNHRRARFPSRERSVLLDFVPAAMPLARDPSEHAHASGTESSAPSTPIGGDGGRFRRASSSRSRRLDSFRPVRAASGFQHLLRHGDSGGVGGGGGTRRF-----------------GSG------RVGGESMLFWHLVGTGGSAPAEWDALRTGSG 940          
BLAST of mRNA_Ecto-sp13_S_contig730.18463.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 1.610e-135
Identity = 380/521 (72.94%), Postives = 389/521 (74.66%), Query Frame = 0
Query:    1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKSVVFDAAEAAVSTAAAAALGPLSSPELTAXXXXXXXXXXXXXXXXXXXXSLRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRGESPLSSWHGRXXXXXXXXXXXXTGDVVDDFGSPGXXXXXXXXXXXXXXXXXLTAPSFSASTGAAAGVGAGGGVVDSVFVGGGHVLCRARSSSATGPVSDIFHLEAADTPAATGAAAAALEAPAAA-PTLLRNNRRARFPSRERAVLLDFVPAAMPLARDPSAHAHASGTESSAPSTPMGGDGGRFRRASSSRSRRLDSFRPVRAASGFQHLLRHGDSGGLGGGGTRRXXXXXXXXXXXXXXXXSPGEGLLGVPAQVGGESMPFSHLVGTGGSAPAE 520
            MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTA GRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKS               +A  P        XXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                XXXXXXXX TAPSF               VVDSVFVGGGHVLCRARSSSATGPVSDIFHLEAADTPAA GAA           PTLLR +RRARFPSRERAVLLDFVPAAMPLARDPSA AHASGTESSAPSTP+GGDGGRFRRASSS SRRLDSFRPVRAASGFQHLLRHGDSGG+GGGGTRR       XXXXXXXXX   EGLLGVPAQV   ++ ++   G   S P +
Sbjct:    1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTAYGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKS---------------SARSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------XXXXXXXXXTAPSFXXXXXXXXXXXXXXXVVDSVFVGGGHVLCRARSSSATGPVSDIFHLEAADTPAAAGAAXXXXXXXXXXXPTLLRKHRRARFPSRERAVLLDFVPAAMPLARDPSAQAHASGTESSAPSTPIGGDGGRFRRASSSSSRRLDSFRPVRAASGFQHLLRHGDSGGVGGGGTRRLGSGGIWXXXXXXXXXXXXEGLLGVPAQVP-RNLSYTAAKGASNSKPQQ 457          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig730.18463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE4.540e-20585.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB4_ECTSI1.610e-13572.94Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig730contigEcto-sp13_S_contig730:17140..21485 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig730.18463.1mRNA_Ecto-sp13_S_contig730.18463.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig730 15158..21587 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig730.18463.1 ID=prot_Ecto-sp13_S_contig730.18463.1|Name=mRNA_Ecto-sp13_S_contig730.18463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=621bp
MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTL
TASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHH
RLPDSAIEDILGVSTAMTNPGCVLKSVVFDAAEAAVSTAAAAALGPLSSP
ELTAGGGGGGGGGGTRKLTVAPSASLRGLLSFFESSARSPPPPPPGDETS
FGECTSAGGSGSRRRWGGGRRKKKQQDGGGGGGGRSRRRRGASRGESPLS
SWHGRGGGGPARRRSGSTGDVVDDFGSPGGGRRHSMVVVDGGGGGGLTAP
SFSASTGAAAGVGAGGGVVDSVFVGGGHVLCRARSSSATGPVSDIFHLEA
ADTPAATGAAAAALEAPAAAPTLLRNNRRARFPSRERAVLLDFVPAAMPL
ARDPSAHAHASGTESSAPSTPMGGDGGRFRRASSSRSRRLDSFRPVRAAS
GFQHLLRHGDSGGLGGGGTRRLGSGGIWAGGGGGAGGSPGEGLLGVPAQV
GGESMPFSHLVGTGGSAPAEWDALGTGSGGFERRLQQRQQLHPRHSVGGG
INPSLARRDGRRRARPRPRARTPLTPLLPGEGAAGGREMKTSRSAWKCLE
RAPRPLPSRTRPGSCGPTTG*
back to top