mRNA_Ecto-sp13_S_contig72989.18457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI) HSP 1 Score: 112 bits (281), Expect = 6.890e-29 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 1 ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 165
+LGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP
Sbjct: 42 QLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 96
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.860e-27 Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 1 ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 165
+LGECLHVLEGHT+RITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP
Sbjct: 265 QLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 319
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A835Z3T4_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.590e-9 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 4 LGECLHVLEGHTERITGVARLDGSRLATSSA-DGSLRVWDVSSGETLHDVLLPSP 165
LGECLH +GHTER+ GV R +G+R S+A D L WD+ +GE + ++ LP+P
Sbjct: 33 LGECLHTWKGHTERVIGVVRPEGTRQVVSAAPDAKLIFWDLDTGEKIRELELPAP 87
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A6V8MTA1_9DELT (Uncharacterized protein n=1 Tax=Geomonas paludis TaxID=2740185 RepID=A0A6V8MTA1_9DELT) HSP 1 Score: 55.8 bits (133), Expect = 1.170e-7 Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 4 LGECLHVLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLHDVLLPS 162
+G L LEGHT ++TGVA DG+ +A+S ADGSLR+WD +SG+ L P+
Sbjct: 630 MGNVLRYLEGHTAQVTGVAWSRDGAYIASSGADGSLRLWDANSGKLLTSTASPA 683
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A2T4BU18_TRILO (WD40 repeat-like protein n=1 Tax=Trichoderma longibrachiatum ATCC 18648 TaxID=983965 RepID=A0A2T4BU18_TRILO) HSP 1 Score: 53.9 bits (128), Expect = 5.590e-7 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 7 GECLHVLEGHTERITGVARLDGSR-LATSSADGSLRVWDVSSGETLH 144
G CL LEGHT +T A D SR LA+SS D ++RVWD+++G+T+H
Sbjct: 848 GSCLMTLEGHTNTVTSTAFSDDSRFLASSSNDKTIRVWDLTTGDTIH 894
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A2V3J4V3_9FLOR (Transcription initiation factor TFIID subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4V3_9FLOR) HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6 Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1
Query: 1 ELGECLHVLEGHTERITGVARLDGSRLATSS-ADGSLRVWDVSSGETLHDVLLPSP 165
E EC+HVL GH+ + V LD RL ++S DG+LR+W+V +GE L V + P
Sbjct: 64 ETRECVHVLRGHSAPVVNVVSLDHGRLVSASQGDGTLRLWNVDTGEELKQVSVTKP 119
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: G9P1M7_HYPAI (NACHT_N domain-containing protein n=1 Tax=Hypocrea atroviridis (strain ATCC 20476 / IMI 206040) TaxID=452589 RepID=G9P1M7_HYPAI) HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6 Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 19 HVLEGHTERITGVARLD-GSRLATSSADGSLRVWDVSSGETLHDV 150
H+L+GH++RI A D G RLA+ S DG++R+WD+SSG+T H +
Sbjct: 880 HILKGHSDRIWSCAYFDDGKRLASRSDDGTIRLWDISSGKTQHTI 924
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A8E2DWT1_9PEZI (Uncharacterized protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2DWT1_9PEZI) HSP 1 Score: 49.3 bits (116), Expect = 6.610e-6 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 7 GECLHVLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLH 144
G+CL LEGH +++ VA D +RLATSS D ++++WD SSG+ L
Sbjct: 2 GKCLQTLEGHIDKVWSVAFSHDSTRLATSSWDKTVKIWDASSGKCLQ 48
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A511KB64_RHOTO (Uncharacterized protein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KB64_RHOTO) HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5 Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1
Query: 13 CLHVLEGHTERITGVARLDGSRLATS-SADGSLRVWDVSSGETLH 144
C+H L GHT + + LDG +A S S DGS+RVWD+ GE++H
Sbjct: 272 CIHTLTGHTSTVRCLRVLDGRPIAVSGSRDGSVRVWDIDKGESVH 316
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A0N0RSG8_9BASI (Wd40 repeat-like protein n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0N0RSG8_9BASI) HSP 1 Score: 49.7 bits (117), Expect = 1.730e-5 Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 7 GECLHVLEGHTERITGVARLD-GSRLATSSADGSLRVWDVSSGETLH 144
G C VL GHT + G A L G +AT SADG++R+WDVS GET+
Sbjct: 190 GTCPRVLIGHTRAVLGSAILGRGREVATCSADGAIRLWDVSRGETVQ 236 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig72989.18457.1 >prot_Ecto-sp13_S_contig72989.18457.1 ID=prot_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVback to top mRNA from alignment at Ecto-sp13_S_contig72989:499..663- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig72989.18457.1 ID=mRNA_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72989:499..663- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72989:499..663- >mRNA_Ecto-sp13_S_contig72989.18457.1 ID=mRNA_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72989:499..663- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |