mRNA_Ecto-sp13_S_contig72987.18456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72987.18456.1
Unique NamemRNA_Ecto-sp13_S_contig72987.18456.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72987.18456.1 vs. uniprot
Match: D7G3L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L1_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.870e-42
Identity = 89/112 (79.46%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 MFGAAVRSGKAAMRLTRPDDTDYQAMLDGEAGVVEPHPQQASIIRRNDAXXXXXASCDGG-PAD-LAADGAGADKGRKSKLYSVAGYIIVTEFCERLAYYGFSGSPHLVLVF 330
            MFGAAVRSGKAAMRLTRPDDTDYQAMLDGEAGVVEPH Q          XXXXX       PAD  AADGAGADKGRKSKLYSVAGYIIVTEFCERLAYYGFSGS  LVL+F
Sbjct:    1 MFGAAVRSGKAAMRLTRPDDTDYQAMLDGEAGVVEPHQQXXXXXXXXXXXXXXXXXXXXXXPADPAAADGAGADKGRKSKLYSVAGYIIVTEFCERLAYYGFSGS--LVLLF 110
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BLAST of mRNA_Ecto-sp13_S_contig72987.18456.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 6.290e-41
Identity = 91/111 (81.98%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    1 MFGAAVRSGKAAMRLTRPDDTDYQAMLDGEAGVVEPHPQQASIIRRNDAXXXXXASCD-GGPADLAADGAGADKGRKSKLYSVAGYIIVTEFCERLAYYGFSGSPHLVLVF 330
            MFGA VRSGKAAMRLTRPDDTDYQAMLDGEAG VEPH QQAS       XXXXX     GGPAD AADGAGA KGRKSKLYSVAGYIIVTEFCERLAYYGFSGS  LVL+F
Sbjct:    1 MFGATVRSGKAAMRLTRPDDTDYQAMLDGEAGEVEPHQQQASXXXXXXXXXXXXXXXXXGGPADPAADGAGAGKGRKSKLYSVAGYIIVTEFCERLAYYGFSGS--LVLLF 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72987.18456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L1_ECTSI5.870e-4279.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H6_9PHAE6.290e-4181.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72987contigEcto-sp13_S_contig72987:328..657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score146.7
Seed ortholog evalue6.2e-33
Seed eggNOG ortholog2880.D7G3L1
Preferred nameSLC15A3
Model size330
KEGG koko:K14638
KEGG TC2.A.17.3
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.oligopeptide transport
EggNOG OGsCOG3104@1,KOG1237@2759
Ec32 ortholog descriptionProton-dependent oligopeptide transporter family
Ec32 orthologEc-19_005090.1
Cds size330
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.561622-CDS-Ecto-sp13_S_contig72987:327..6571681463997.561622-CDS-Ecto-sp13_S_contig72987:327..657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72987 328..657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72987.18456.1prot_Ecto-sp13_S_contig72987.18456.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72987 328..657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72987.18456.1

>prot_Ecto-sp13_S_contig72987.18456.1 ID=prot_Ecto-sp13_S_contig72987.18456.1|Name=mRNA_Ecto-sp13_S_contig72987.18456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MFGAAVRSGKAAMRLTRPDDTDYQAMLDGEAGVVEPHPQQASIIRRNDAA
AAAAASCDGGPADLAADGAGADKGRKSKLYSVAGYIIVTEFCERLAYYGF
SGSPHLVLVF
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mRNA from alignment at Ecto-sp13_S_contig72987:328..657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72987.18456.1 ID=mRNA_Ecto-sp13_S_contig72987.18456.1|Name=mRNA_Ecto-sp13_S_contig72987.18456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72987:328..657+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGCGCTGCTGTGCGCAGTGGGAAGGCTGCGATGCGGCTCACGAG
GCCGGACGACACAGACTACCAGGCCATGCTGGACGGAGAGGCAGGAGTAG
TAGAGCCTCACCCGCAGCAGGCATCGATAATCCGCCGCAATGATGCAGCA
GCAGCAGCAGCAGCCTCCTGTGATGGCGGACCGGCGGACCTAGCAGCAGA
CGGGGCGGGGGCCGATAAGGGGAGGAAGTCGAAGCTCTACAGTGTGGCCG
GATACATCATCGTGACGGAGTTCTGCGAGAGGCTCGCGTACTACGGCTTC
TCAGGTAGCCCGCATCTTGTGCTCGTGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72987:328..657+

>mRNA_Ecto-sp13_S_contig72987.18456.1 ID=mRNA_Ecto-sp13_S_contig72987.18456.1|Name=mRNA_Ecto-sp13_S_contig72987.18456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72987:328..657+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGCGCTGCTGTGCGCAGTGGGAAGGCTGCGATGCGGCTCACGAG
GCCGGACGACACAGACTACCAGGCCATGCTGGACGGAGAGGCAGGAGTAG
TAGAGCCTCACCCGCAGCAGGCATCGATAATCCGCCGCAATGATGCAGCA
GCAGCAGCAGCAGCCTCCTGTGATGGCGGACCGGCGGACCTAGCAGCAGA
CGGGGCGGGGGCCGATAAGGGGAGGAAGTCGAAGCTCTACAGTGTGGCCG
GATACATCATCGTGACGGAGTTCTGCGAGAGGCTCGCGTACTACGGCTTC
TCAGGTAGCCCGCATCTTGTGCTCGTGTTT
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