mRNA_Ecto-sp13_S_contig10156.185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10156.185.1
Unique NamemRNA_Ecto-sp13_S_contig10156.185.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10156.185.1 vs. uniprot
Match: A0A6H5LDU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDU4_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.110e-60
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 1 
Query:    1 LGSPSGAGFAAPSPTGAPRTLPPAALAAAAVVREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDETGKGAMHPLMASKR 339
            LGSPSGAGFAAPSPTGAPRTLPPAALAAAAV+REGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQ XXX PASP+ETGKGAMHPLMASKR
Sbjct:  470 LGSPSGAGFAAPSPTGAPRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXPASPEETGKGAMHPLMASKR 582
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BLAST of mRNA_Ecto-sp13_S_contig10156.185.1 vs. uniprot
Match: D8LR84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR84_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.900e-41
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:  100 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDETGKGAMHPLMASKR 339
            EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPD TGKG MHPLMASKR
Sbjct:  351 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDATGKGGMHPLMASKR 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10156.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDU4_9PHAE1.110e-6096.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR84_ECTSI1.900e-4197.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10156contigEcto-sp13_S_contig10156:4472..5838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.4
Seed ortholog evalue2.6e-34
Seed eggNOG ortholog2880.D8LR84
Preferred nameDCAF7
Model size339
KEGG koko:K11805
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
Exons2
EggNOG free text desc.epidermal cell fate specification
EggNOG OGsKOG0290@1,KOG0290@2759
Cds size339
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.5223556-CDS-Ecto-sp13_S_contig10156:4471..45521681462511.5223556-CDS-Ecto-sp13_S_contig10156:4471..4552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10156 4472..4552 -
1681462511.5343075-CDS-Ecto-sp13_S_contig10156:5580..58381681462511.5343075-CDS-Ecto-sp13_S_contig10156:5580..5838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10156 5581..5838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10156.185.1prot_Ecto-sp13_S_contig10156.185.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10156 4472..5838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10156.185.1

>prot_Ecto-sp13_S_contig10156.185.1 ID=prot_Ecto-sp13_S_contig10156.185.1|Name=mRNA_Ecto-sp13_S_contig10156.185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
LGSPSGAGFAAPSPTGAPRTLPPAALAAAAVVREGSGSGARSPTWPLPRV
IPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQQQQQPASPDET
GKGAMHPLMASKR
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mRNA from alignment at Ecto-sp13_S_contig10156:4472..5838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10156.185.1 ID=mRNA_Ecto-sp13_S_contig10156.185.1|Name=mRNA_Ecto-sp13_S_contig10156.185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10156:4472..5838- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGGGAGTCCCTCCGGAGCGGGCTTCGCCGCGCCGTCGCCTACGGGGGC
CCCGCGGACTCTCCCCCCCGCGGCGTTGGCGGCCGCGGCCGTGGTTAGGG
AGGGGAGCGGCAGCGGCGCACGCTCCCCCACTTGGCCGCTTCCGCGAGTC
ATCCCCGAGGGGTCGGAGATCTCTGACCAGGACGCCGGCGGCTTGCTGAT
CGACTTCTTCAAGTCGGTGCACGATAAGGTCAAGACTGCTTCCGACGAGC
TCGGGGAGGTATGTATGTGTGTACGGAAGGGTGTAGGTCGTGTTTTGACC
GCTCACGGTCGCCCGCAGAGCAGCATGTTCAGTCGTCATGTTGTGCTGCT
AGTTTTCCCTTCCGCGCTGTGCTTGGGACATTTCTTGTTTCTGATGCTCT
CTGTTTGACCTTGGGCGGCCGCGCTCAAAATCCCTCTTGCTCAAACCTCT
AGTTGGTTGATTGCGTAGCGGCGCCACCGTCCCTCCGAAACGCTCGTTTT
TTCCAAACCGCAAAGACGAGAAGCACGCACACAGTATTAAGTTCTCAACA
GTGGCGCAAGAGTGCGAGAGTCAACCGCGCACACCCTAAAGACCGATTTT
CACAGCTCACGTACGACCATTGTAGGGTGCCAACGCCGACAGGATAGGGA
TTTTTGCAACGACAATAAATACGTGGTAGAGATTGATCGTTCCTTGCTTG
TGTCGGTGAGCTTTACTTGGGAGTACCGTATACGACACAAGATAACACAC
CCCCTGACCCGATTTTCAAGGCTCGGTTTTTCAAGAGCAGTAAAAGTGGG
GATGCCGAAAACGGCGGCGTTGGAGCTTTTCTGATCGAGAGCTCTCCGAA
CACGTATCGTTTGGTTAACTCATCGTCTTGGTCGTGAAGTAATCGAGCTT
CGAAAATCGGTCCAGGGGGTGTGTTACCTTATGTCGTGTACGGTACTCTC
TTCGGGTTGTGGAGTAATCGATGTTTGAGGAGTCAATCTAGGGGTTACGG
TACGCTACGTGATCGCTCGGTCGGAATATTACAGTATTCAGTACCGCGGC
ATGTCTACACCCCCCTTCTATGGCCATCTATGGCAGAGTCGTGTGGTATG
CGTGACCGTGGGTGTCCTCATTTCAGTGCTGATTTGTAGATAGTCTAATG
GTGTGCCTGTTACTACATGTAGCGTTCTCCCTGTGCTCTCAGCCCCGCAC
ATGAAACACGCCAATCCTACATTGTACAAAACGTTTCCTCTCGCTGCATG
CACCCCGCCCGTGTTCGGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCTGCGAGCCCTGACGAGACGGGCAAGGGAGCGATGCACCCGC
TCATGGCAAGCAAGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10156:4472..5838-

>mRNA_Ecto-sp13_S_contig10156.185.1 ID=mRNA_Ecto-sp13_S_contig10156.185.1|Name=mRNA_Ecto-sp13_S_contig10156.185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10156:4472..5838- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGGGAGTCCCTCCGGAGCGGGCTTCGCCGCGCCGTCGCCTACGGGGGC
CCCGCGGACTCTCCCCCCCGCGGCGTTGGCGGCCGCGGCCGTGGTTAGGG
AGGGGAGCGGCAGCGGCGCACGCTCCCCCACTTGGCCGCTTCCGCGAGTC
ATCCCCGAGGGGTCGGAGATCTCTGACCAGGACGCCGGCGGCTTGCTGAT
CGACTTCTTCAAGTCGGTGCACGATAAGGTCAAGACTGCTTCCGACGAGC
TCGGGGAGCAGCAGCAGCAGCAGCAGCAGCCTGCGAGCCCTGACGAGACG
GGCAAGGGAGCGATGCACCCGCTCATGGCAAGCAAGCGC
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