mRNA_Ecto-sp13_S_contig7296.18450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7296.18450.1
Unique NamemRNA_Ecto-sp13_S_contig7296.18450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7296.18450.1 vs. uniprot
Match: D7G040_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G040_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.800e-12
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   88 LSTWVGRLPSAV------LLLFPTSVRTRLLQILPNDFTPHEKEASLWNGPPSMLRVQQV 249
            LSTWVG LPSAV      LLL+       LLQ LP DFTPHEKEASLW+GP SMLRVQQ 
Sbjct:   34 LSTWVGLLPSAVSCSCSCLLLYGQG----LLQTLPGDFTPHEKEASLWSGPSSMLRVQQA 89
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BLAST of mRNA_Ecto-sp13_S_contig7296.18450.1 vs. uniprot
Match: D7FRZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.630e-11
Identity = 39/60 (65.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   88 LSTWVGRLPSAV------LLLFPTSVRTRLLQILPNDFTPHEKEASLWNGPPSMLRVQQV 249
            L TWVG LPSAV      LLL+       LLQ LP DFTPHEKEASLW+GP SML VQQV
Sbjct:   34 LCTWVGLLPSAVSCSCSCLLLYGQG----LLQTLPGDFTPHEKEASLWSGPSSMLPVQQV 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7296.18450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G040_ECTSI2.800e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRZ8_ECTSI2.630e-1165.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7296contigEcto-sp13_S_contig7296:6622..7552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.1966438-UTR-Ecto-sp13_S_contig7296:6621..66701681463997.1966438-UTR-Ecto-sp13_S_contig7296:6621..6670Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7296 6622..6670 -
1681463997.2285533-UTR-Ecto-sp13_S_contig7296:7503..75521681463997.2285533-UTR-Ecto-sp13_S_contig7296:7503..7552Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7296 7504..7552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.2072031-CDS-Ecto-sp13_S_contig7296:6670..67041681463997.2072031-CDS-Ecto-sp13_S_contig7296:6670..6704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7296 6671..6704 -
1681463997.2181647-CDS-Ecto-sp13_S_contig7296:7306..75031681463997.2181647-CDS-Ecto-sp13_S_contig7296:7306..7503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7296 7307..7503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7296.18450.1prot_Ecto-sp13_S_contig7296.18450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7296 6671..7503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7296.18450.1

>prot_Ecto-sp13_S_contig7296.18450.1 ID=prot_Ecto-sp13_S_contig7296.18450.1|Name=mRNA_Ecto-sp13_S_contig7296.18450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MTPSLPQKLVHLTCPHGSAVCRLLCSCSSLLRYGRGCCKSYPTTSHPMKR
RQAYGMDHQACYVYSRSNHTRSDVRS*
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mRNA from alignment at Ecto-sp13_S_contig7296:6622..7552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7296.18450.1 ID=mRNA_Ecto-sp13_S_contig7296.18450.1|Name=mRNA_Ecto-sp13_S_contig7296.18450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7296:6622..7552- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTGGGCGATGTAATTTTCCTCTCTGCTCGTCGAGCTTTCCGTTCCGCA
TGACCCCATCTCTTCCGCAGAAACTTGTCCACTTAACTTGTCCACATGGG
TCGGCCGTCTGCCGTCTGCTGTGCTCCTGCTCTTCCCTACTTCGGTACGG
ACGAGGCTGCTGCAAATCCTACCCAACGACTTCACACCCCATGAAAAGGA
GGCAAGCCTATGGAATGGACCACCAAGCATGTTACGTGTACAGCAGGTGA
GGCACGCGGTGGTACTCTGGCCTGTTTTCGCTGTCTTGCTGTCTTTCTGT
GTTTACTGCTGTAGTTGACGGAGCATTTTCACCATAACCCTCTCGCCTCT
TGGTCTTCCCGCACCAGCCCACCTTGAGCCTTGAGTCTCTTGTACAGCAG
TATTGCATTGCCTAGTGCTGGTATGCGGCAGAGCTTCTCGCTCTTAAGTC
GTATGAACCAACCGTGGATACACCACAGAGGAACCCTCGGCAGTGTAGTC
TAGATTGTCTACAGTGGAGTGCCCTCATGCTTGTTTTAATGGTGAGCAGA
ATAGGGGTGTTGACGCTGGCACTATTTCTTATTCTTTAATCCAACATAAG
AAATAAAACAACCTTCCCGCCTGGAACCTGGTAATTAGTACTGATATCAG
TAGGGGACACCATCAAGAGGCGTCGTGCGTGCTGGCAAAGTACACGGTTG
GCGATGTTTACACCGGCTTTGCGTCGAGCATAACCTGGTATATTAGTACA
GTAGATGGCAAATATCGGCATCTGCTCGTTCGTCACTCGTTACCCTCTCC
GTTCACCACTTTTCTGTTTCTTCCGCTGTACACCCGCCCCCCGGTCAGGT
CAAACCACACACGTTCAGATGTGCGAAGTTGAAGGAGTTCAGGTAAATGA
GGTGGACTGCACATCCTTCGCCGCTTTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7296:6622..7552-

>mRNA_Ecto-sp13_S_contig7296.18450.1 ID=mRNA_Ecto-sp13_S_contig7296.18450.1|Name=mRNA_Ecto-sp13_S_contig7296.18450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7296:6622..7552- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCCATCTCTTCCGCAGAAACTTGTCCACTTAACTTGTCCACATGG
GTCGGCCGTCTGCCGTCTGCTGTGCTCCTGCTCTTCCCTACTTCGGTACG
GACGAGGCTGCTGCAAATCCTACCCAACGACTTCACACCCCATGAAAAGG
AGGCAAGCCTATGGAATGGACCACCAAGCATGTTACGTGTACAGCAGGTC
AAACCACACACGTTCAGATGTGCGAAGTTGA
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