mRNA_Ecto-sp13_S_contig72872.18442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72872.18442.1
Unique NamemRNA_Ecto-sp13_S_contig72872.18442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: D7FPY0_ECTSI (Filamentous temperature sensitive Z n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.340e-27
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGRKV 165
            VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGRK 
Sbjct:  185 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGRKA 239
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A397B5V2_9STRA (Tubulin domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B5V2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.900e-22
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMIAR L GV+F+VCNTDAQHL TTLTDNR+Q+G  +T GLGCGANPDAGR
Sbjct:    6 VNNMIARGLHGVDFLVCNTDAQHLKTTLTDNRIQMGSELTGGLGCGANPDAGR 58
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A7S2G4Q4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4Q4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.610e-22
Identity = 39/55 (70.91%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGRKV 165
            V+NMIAR LKGV+F+V NTDAQHL+T LTDNR+Q+G++ T+GLGCGANPDAG++ 
Sbjct:    3 VNNMIARGLKGVDFVVANTDAQHLATCLTDNRIQMGKATTQGLGCGANPDAGKEA 57
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A3R7ZF59_9STRA (Tubulin domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ZF59_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.300e-21
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAG 156
            V+NMIAR L GV+F+VCNTDAQHL TTLTDNR+Q+G  +T GLGCGANPDAG
Sbjct:   73 VNNMIARGLHGVDFLVCNTDAQHLKTTLTDNRIQMGSELTGGLGCGANPDAG 124
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A7S2WEA8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WEA8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.720e-21
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMIAR L GVEF+  NTDAQHLST LTDNRLQ+G S T GLGCGANPDAGR
Sbjct:   43 VNNMIARQLSGVEFLALNTDAQHLSTCLTDNRLQIGSSFTSGLGCGANPDAGR 95
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: W7TYP0_9STRA (Cell division protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYP0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.000e-21
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMI R L GVEF+VCNTDAQHL+TTLTDNRLQ+GR +T+GLGCGANPD G+
Sbjct:  176 VNNMIMRGLSGVEFLVCNTDAQHLATTLTDNRLQIGRDITQGLGCGANPDVGK 228
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A7S4VU45_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VU45_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.070e-20
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMIARNL+GV+F+  NTDAQHLSTTLTDNRLQ+G S+T GLGCGANPDAGR
Sbjct:  233 VNNMIARNLQGVDFLALNTDAQHLSTTLTDNRLQIGTSLTSGLGCGANPDAGR 285
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A1V9YPE5_9STRA (Cell division protein ftsZ n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPE5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.520e-20
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMIAR LKGVEF+VCNTDAQHL TTLTDNR+Q+G  +T GLGCGANP+AGR
Sbjct:  312 VNNMIARGLKGVEFLVCNTDAQHLKTTLTDNRIQMGSELTGGLGCGANPEAGR 364
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BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A397E2C1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E2C1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.750e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMIAR L GV+F+VCNTDAQHL TTLTDNR+Q+G  +T GLGCGANPDAGR
Sbjct:    6 VNNMIARGLHGVDFLVCNTDAQHLKTTLTDNRIQMGSELTGGLGCGANPDAGR 58
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Match: A0A7S0C3T8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3T8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.060e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VSNMIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR 159
            V+NMIAR+L GV+F+  NTDAQHLSTTLTDNRLQ+G  +T GLGCGANPDAGR
Sbjct:   39 VNNMIARSLTGVDFLALNTDAQHLSTTLTDNRLQIGSEITNGLGCGANPDAGR 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72872.18442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY0_ECTSI1.340e-2798.18Filamentous temperature sensitive Z n=2 Tax=Ectoca... [more]
A0A397B5V2_9STRA3.900e-2277.36Tubulin domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S2G4Q4_9STRA7.610e-2270.91Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A3R7ZF59_9STRA2.300e-2176.92Tubulin domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S2WEA8_9STRA3.720e-2179.25Hypothetical protein (Fragment) n=2 Tax=Eucampia a... [more]
W7TYP0_9STRA7.000e-2177.36Cell division protein n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S4VU45_9STRA1.070e-2081.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1V9YPE5_9STRA1.520e-2079.25Cell division protein ftsZ n=1 Tax=Achlya hypogyna... [more]
A0A397E2C1_9STRA1.750e-2077.36Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S0C3T8_9STRA2.060e-2077.36Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72872contigEcto-sp13_S_contig72872:49..213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.7
Seed ortholog evalue3.4e-21
Seed eggNOG ortholog2880.D7FPY0
Model size165
KEGG koko:K03531
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.chloroplast fission
EggNOG OGs2QRFN@2759,COG0206@1
Cds size156
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02048,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.5849166-CDS-Ecto-sp13_S_contig72872:48..2041681463996.5849166-CDS-Ecto-sp13_S_contig72872:48..204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72872 49..204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.608438-UTR-Ecto-sp13_S_contig72872:204..2131681463996.608438-UTR-Ecto-sp13_S_contig72872:204..213Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72872 205..213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72872.18442.1prot_Ecto-sp13_S_contig72872.18442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72872 49..204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72872.18442.1

>prot_Ecto-sp13_S_contig72872.18442.1 ID=prot_Ecto-sp13_S_contig72872.18442.1|Name=mRNA_Ecto-sp13_S_contig72872.18442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MIARNLKGVEFMVCNTDAQHLSTTLTDNRLQLGRSVTEGLGCGANPDAGR
KV
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mRNA from alignment at Ecto-sp13_S_contig72872:49..213-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72872.18442.1 ID=mRNA_Ecto-sp13_S_contig72872.18442.1|Name=mRNA_Ecto-sp13_S_contig72872.18442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72872:49..213- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGCAATATGATTGCACGCAACCTTAAGGGCGTGGAGTTTATGGTCTG
CAACACAGACGCGCAGCACCTGTCCACGACGCTGACGGACAACCGACTAC
AGCTGGGGAGGAGCGTCACGGAGGGGCTGGGCTGCGGCGCGAACCCGGAC
GCCGGCCGAAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72872:49..213-

>mRNA_Ecto-sp13_S_contig72872.18442.1 ID=mRNA_Ecto-sp13_S_contig72872.18442.1|Name=mRNA_Ecto-sp13_S_contig72872.18442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72872:49..213- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGCACGCAACCTTAAGGGCGTGGAGTTTATGGTCTGCAACACAGA
CGCGCAGCACCTGTCCACGACGCTGACGGACAACCGACTACAGCTGGGGA
GGAGCGTCACGGAGGGGCTGGGCTGCGGCGCGAACCCGGACGCCGGCCGA
AAGGTG
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