mRNA_Ecto-sp13_S_contig72832.18438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72832.18438.1
Unique NamemRNA_Ecto-sp13_S_contig72832.18438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72832.18438.1 vs. uniprot
Match: D8LPT2_ECTSI (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPT2_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.360e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MINHENGHTGQLASVTTMLNFVGATIRILTTIQE 102
            MINH+NGHTGQLASVTTMLNFVGATIRILTTIQE
Sbjct:  163 MINHDNGHTGQLASVTTMLNFVGATIRILTTIQE 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72832.18438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPT2_ECTSI6.360e-1297.06Mannose-P-dolichol utilization defect 1 protein ho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72832contigEcto-sp13_S_contig72832:81..182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score67.8
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D8LPT2
Model size102
KEGG koko:K09660
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
Cds size102
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.4367442-CDS-Ecto-sp13_S_contig72832:80..1821681463996.4367442-CDS-Ecto-sp13_S_contig72832:80..182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72832 81..182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72832.18438.1prot_Ecto-sp13_S_contig72832.18438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72832 81..182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72832.18438.1

>prot_Ecto-sp13_S_contig72832.18438.1 ID=prot_Ecto-sp13_S_contig72832.18438.1|Name=mRNA_Ecto-sp13_S_contig72832.18438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MINHENGHTGQLASVTTMLNFVGATIRILTTIQE
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mRNA from alignment at Ecto-sp13_S_contig72832:81..182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72832.18438.1 ID=mRNA_Ecto-sp13_S_contig72832.18438.1|Name=mRNA_Ecto-sp13_S_contig72832.18438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72832:81..182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTAACCACGAGAACGGGCACACGGGGCAGCTGGCATCCGTGACGAC
AATGCTCAACTTCGTCGGCGCGACGATCAGAATCCTCACCACAATCCAAG
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72832:81..182-

>mRNA_Ecto-sp13_S_contig72832.18438.1 ID=mRNA_Ecto-sp13_S_contig72832.18438.1|Name=mRNA_Ecto-sp13_S_contig72832.18438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72832:81..182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTAACCACGAGAACGGGCACACGGGGCAGCTGGCATCCGTGACGAC
AATGCTCAACTTCGTCGGCGCGACGATCAGAATCCTCACCACAATCCAAG
AG
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