mRNA_Ecto-sp13_S_contig7283.18436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7283.18436.1
Unique NamemRNA_Ecto-sp13_S_contig7283.18436.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7283.18436.1 vs. uniprot
Match: D7G2W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W8_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.210e-57
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:  121 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGMKKFINQ 405
            MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETG+ KFINQ
Sbjct:    1 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7283.18436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W8_ECTSI1.210e-5797.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7283contigEcto-sp13_S_contig7283:3922..5721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size441
Hectar predicted targeting categorymitochondrion
Exons3
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.3702712-CDS-Ecto-sp13_S_contig7283:3921..40731681463996.3702712-CDS-Ecto-sp13_S_contig7283:3921..4073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 3922..4073 +
1681463996.3831346-CDS-Ecto-sp13_S_contig7283:5046..51871681463996.3831346-CDS-Ecto-sp13_S_contig7283:5046..5187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 5047..5187 +
1681463996.3975947-CDS-Ecto-sp13_S_contig7283:5573..57211681463996.3975947-CDS-Ecto-sp13_S_contig7283:5573..5721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 5574..5721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7283.18436.1prot_Ecto-sp13_S_contig7283.18436.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7283 3922..5721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7283.18436.1

>prot_Ecto-sp13_S_contig7283.18436.1 ID=prot_Ecto-sp13_S_contig7283.18436.1|Name=mRNA_Ecto-sp13_S_contig7283.18436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MWFMGRQPTAASRNSATTTSSRSIRLLRHYGDSSRSVGGGMMGSQSRWGW
SRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLV
AYLVFFLLFFGILILESDVTFQHSVETGMKKFINQVRPASSMRRKS*
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mRNA from alignment at Ecto-sp13_S_contig7283:3922..5721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7283.18436.1 ID=mRNA_Ecto-sp13_S_contig7283.18436.1|Name=mRNA_Ecto-sp13_S_contig7283.18436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1800bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7283:3922..5721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTCATGGGCAGACAGCCGACGGCCGCCTCGCGCAACAGCGCTAC
TACTACGTCGTCGCGAAGCATTAGGCTACTCCGCCATTACGGCGACAGCA
GCAGGAGCGTTGGAGGGGGCATGATGGGCAGCCAATCCCGGTGGGGATGG
AGGTGCGTTGGCGGGGCGTAAGCTCTTCTATGTCGTCAAACAAGTAACCA
TTTGGAGGTTAGCGCTGGTGTGGGGTGACCTTGCGAGTTTTCGGAAAAAC
TCAAAACTTAATACCACGACCTTGCAGTGCATGTCGAAAGCATGGCAGGT
TGTATGCATACCGCAAGACGAACAGCACTGAGCAGTTCCATGTGTGTACA
CTGTAAATATGTAGACTATCTTGTAAATAGTGCATGTAGTACTAATCGAC
ATGTGGTAGTCTGACACTTGAGTTGCAGCCCGGTTTGAACCCTAGAACCC
TTGACACGTTAGAGTACCGAGTGCTAAGCACTTCTGCGCTACTCCTTAGA
GCCTGCTATGATCGTGGAGCACTCCGCTTGGTGGAATCGCGACATGCACT
TCTAAAGCTATGTTATTACATGTGGAATGAAAATATGCCACCTGACCACA
TGCTCTCCGGTAATCTATGCATAGAAGGGTCGTGCATCGCAAGCGCACAC
AGACAGACGGATAGGTAGCACAACGACCTCTCTGTGGCAGGTACTTGGGG
TGGCGCTGCAGCTCATGGACGATGAACTGCTGTGTTCTACAGCGGCTTGC
AACATCCCAATGCAGCGGTTCAGCAGTCCCACGACACCTCAGTGCACGGG
CTCTCCTGTCCTACCGCTCTCGGTTGTATCATCTGCGACCCCCCCCGCCC
CGTGGATGAAAGTAGTTAGCACAACTACAATTTGAGTGCCCACCCATTCA
TGGTTTCGCCTTCTGCACGTCCACATTCTCCTTTGTGTCAAATCCAGTTG
TGACCACGCAAAAGCTTGTTTGGTTGCGATCACAATTACTTACTCGGAAT
ACGTTTGGAACAAAGAGGAGGCCGGCCTACGGGCAAACAACAAAGATGCT
CGTGACCCCCCCCTGTCCATTTCCCGTGTGCGTGTGCCTGCTCCTCCTAA
CCGTAAAACATGGTGGTACTGCTAGCCGGTCAGAGACCGAGCGGCTGGTT
CGACTGCAAGCCGTCGTGAGGGGGTGGCTGTTGCGGCGAAAGGTTAATTG
GATCCCGGCGAGAGACCTGGAGGCTGTGCTGAAGGACCTGGACCAAAGAG
ACAAGGGCTTGAGGAGGTACTGCCGTAGAAGCCCCTCGCGTCTTGACGCT
TGTGCGTGTCCACGCCGTGGCCGGTGGCGTATCCTGTAATAGTCTACGGG
ACTGCTGTAGTTTGTTTGAGCCCTGCAAGGGTAGGGTTTGGAGGGGACAC
GGGGAACTTAAGTCGAGGTTTGCTGTCTGTCGGTCTGTCTGTCTGTCGGT
CTGTCTGTCTGCTTGTATCTCTTTCTCAGCCTGTCTCTCTCTGTGTATCT
CTCCCCCCCCCCCCCCCTCTCTCTGGCTGAGTTTCTTCCTTAGTGCGTTC
TCGTGGGTTCTACATGCTGCTGTCATGTTCTACCTGAACCTTGTTCCTCT
TGTGTACCTCTTGCGCCGCGTGTCGCGGTCATCGTCGTCGTCATCATCAT
AGGCTGGTGGCCTACCTTGTATTCTTTCTGCTTTTCTTCGGGATCCTCAT
TCTCGAGTCCGACGTCACCTTCCAGCACTCCGTCGAGACCGGCATGAAAA
AATTCATCAACCAGGTTAGGCCCGCAAGCAGCATGAGAAGGAAAAGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7283:3922..5721+

>mRNA_Ecto-sp13_S_contig7283.18436.1 ID=mRNA_Ecto-sp13_S_contig7283.18436.1|Name=mRNA_Ecto-sp13_S_contig7283.18436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7283:3922..5721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTCATGGGCAGACAGCCGACGGCCGCCTCGCGCAACAGCGCTAC
TACTACGTCGTCGCGAAGCATTAGGCTACTCCGCCATTACGGCGACAGCA
GCAGGAGCGTTGGAGGGGGCATGATGGGCAGCCAATCCCGGTGGGGATGG
AGCCGGTCAGAGACCGAGCGGCTGGTTCGACTGCAAGCCGTCGTGAGGGG
GTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCGGCGAGAGACCTGGAGG
CTGTGCTGAAGGACCTGGACCAAAGAGACAAGGGCTTGAGGAGGCTGGTG
GCCTACCTTGTATTCTTTCTGCTTTTCTTCGGGATCCTCATTCTCGAGTC
CGACGTCACCTTCCAGCACTCCGTCGAGACCGGCATGAAAAAATTCATCA
ACCAGGTTAGGCCCGCAAGCAGCATGAGAAGGAAAAGCTAG
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