prot_Ecto-sp13_S_contig72779.18429.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72779.18429.1
Unique Nameprot_Ecto-sp13_S_contig72779.18429.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.400e-22
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:    1 QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGIVPVLIQCVADEDPD 64
            +V PDSDAWRRLRHLLSSS+T+VR  TC+VI R+T GNKEQ+RA+IEAGIVP LIQ ++D +PD
Sbjct:  556 EVDPDSDAWRRLRHLLSSSNTEVRENTCQVIRRITLGNKEQTRAMIEAGIVPALIQLLSDLNPD 619
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BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.240e-20
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    1 QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGIVPVLIQCVADEDPD 64
            +VVP SDAWRRLR LLSSSD  VR KTC +I +VT  NKEQSRA IEAGIVPVLIQ +AD +PD
Sbjct:  739 KVVPASDAWRRLRDLLSSSDPKVREKTCEIIHKVTRCNKEQSRAAIEAGIVPVLIQLLADGNPD 802
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BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Match: D7FJT8_ECTSI (Importin alpha-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.740e-19
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGIVPVLIQCVADEDP 63
            +VVPDS  W+RL+HLLSSSDT+V  K CRVI R+T+GNKEQ+RA IEAGI+PVLIQ + + +P
Sbjct:  657 KVVPDSHGWQRLQHLLSSSDTEVCEKACRVIHRITSGNKEQARAAIEAGIIPVLIQLLPNANP 719
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72779.18429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJT7_ECTSI5.400e-2271.88Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT9_ECTSI4.240e-2073.44Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT8_ECTSI2.740e-1966.67Importin alpha-like protein n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloPFAMPF00514Armcoord: 38..63
e-value: 1.5E-4
score: 21.7
NoneNo IPR availableGENE3D1.25.10.110coord: 1..64
e-value: 7.3E-13
score: 50.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 4..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72779contigEcto-sp13_S_contig72779:233..424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72779.18429.1mRNA_Ecto-sp13_S_contig72779.18429.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72779 233..424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72779.18429.1 ID=prot_Ecto-sp13_S_contig72779.18429.1|Name=mRNA_Ecto-sp13_S_contig72779.18429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
QVVPDSDAWRRLRHLLSSSDTDVRGKTCRVILRVTTGNKEQSRAVIEAGI
VPVLIQCVADEDPD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR016024ARM-type_fold